The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
21
|
sequence length |
108
|
structure length |
108
|
Chain Sequence |
GSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the Cytoplasmic Domain of Yersinia Pestis Yscd, an Essential Component of the Type III Secretion System
pubmed doi rcsb |
| molecule keywords |
TYPE III SECRETION PROTEIN
|
| molecule tags |
Transport protein
|
| source organism |
Yersinia pestis
|
| total genus |
21
|
| structure length |
108
|
| sequence length |
108
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2011-09-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF16697 | Yop-YscD_cpl | Inner membrane component of T3SS, cytoplasmic domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Tumour Suppressor Smad4 | Tumour Suppressor Smad4 |
#chains in the Genus database with same CATH superfamily 3VA4 A; 3I6U A; 1J4L A; 1K3N A; 3I0M A; 2AFF A; 4QCJ A; 3UV0 A; 2BRF A; 1J4O A; 3ELV A; 1FHQ A; 5DJO A; 2PIE A; 3ELS A; 1K3J A; 1J4P A; 3I0N A; 1K2M A; 1FHR A; 1K2N A; 3UMZ A; 4H87 A; 1MZK A; 2KFU A; 3VPY A; 4EGX A; 2JKD A; 2KKL A; 1WLN A; 3KT9 A; 3HUF A; 3UNM A; 1LGP A; 4EJQ A; 5E50 A; 2G1L A; 1R21 A; 2JPE A; 1UJX A; 1DMZ A; 2CSW A; 1LGQ A; 3UOT A; 1QU5 A; 1G6G A; 1G3G A; 4G2S A; 1WV3 A; 4D9V A; 1J4Q A; 2FF4 A; 3MDB A; 2LC1 A; 3POA A; 2JQI A; 1K3Q A; 5A8I A; 3HUE A; 3OUN A; 1UHT A; 3I6W A; 1YJM A; 3UN0 A; 1GXC A; 1YJ5 C; 2W3O A; 2KB3 A; 3UNN A; 3PO8 A; 4JON A; 2JQJ A; 3VA1 A; 4A0E A; 2XT9 B; 2A0T A; 3HX1 A; 2KB4 A; 3GQS A; 2JQL A; 2EH0 A; 2FEZ A; 3FM8 A; 1J4K A; #chains in the Genus database with same CATH topology 1Z0Z A; 1DEV A; 2I2C A; 3VA4 A; 3I6U A; 1J4L A; 2QV7 A; 4JIW D; 1K3N A; 5EJG A; 1U7V B; 3I0M A; 4L02 A; 2AFF A; 4QCJ A; 4KU0 D; 1U7F A; 2BRF A; 1J4O A; 3UV0 A; 3ELV A; 5JEL A; 3V7U A; 5DHT A; 4WRR A; 1MK2 A; 5DHR A; 5DHQ A; 5JEO A; 4JIV D; 1FHQ A; 5DJO A; 3VZB A; 1YGS A; 2PIE A; 3ELS A; 1K3J A; 1J4P A; 3I0N A; 1K2M A; 1FHR A; 1K2N A; 1U0T A; 3V8P A; 3UMZ A; 1U7F B; 3T5P A; 4H87 A; 1ZOQ A; 1MZK A; 5JEK A; 2KFU A; 3VPY A; 4EGX A; 2JKD A; 3VZC A; 2KKL A; 1WLN A; 2I29 A; 3KT9 A; 5DHU A; 3HUF A; 1KHU A; 3UNM A; 4WER A; 1LGP A; 3PFN A; 4EJQ A; 5E50 A; 2G1L A; 2I2D A; 3V8R A; 4V24 A; 1R21 A; 1SUW A; 2JPE A; 1DD1 A; 3V7W A; 1UJX A; 3S40 A; 2I2B A; 1DMZ A; 2CSW A; 5EJI A; 1LGQ A; 4DY6 A; 3UOT A; 4R9P A; 1QU5 A; 2P1R A; 5BVI A; 1G6G A; 5DHP A; 1G3G A; 1QWT A; 3VZD A; 4G2S A; 1G88 A; 1WV3 A; 1Y3H A; 3V8Q A; 4D9V A; 1J4Q A; 2JGR A; 5EJF A; 2FF4 A; 1Z0U A; 3MDB A; 2Q5F A; 2I2A A; 4HAO A; 2LC1 A; 3POA A; 1MJS A; 2JQI A; 1J2F A; 1K3Q A; 5A8I A; 3HUE A; 1U0R A; 1Z0S A; 2I1W A; 2BON A; 3OUN A; 2QVL A; 1Y3I A; 1UHT A; 1YT5 A; 3I6W A; 1MR1 A; 3V7Y A; 1YJM A; 3GMJ A; 2I2F A; 3UN0 A; 1GXC A; 3A77 A; 1YJ5 C; 5DHS A; 2W3O A; 2KB3 A; 5JEM A; 3UNN A; 3PO8 A; 2XXS A; 3V8M A; 2AN1 A; 5EJH A; 5C4V A; 5JEJ A; 4JON A; 5JER A; 2JQJ A; 3AFO A; 3DIT A; 3VA1 A; 4A0E A; 1KHX A; 3V80 A; 2XT9 B; 2A0T A; 3HX1 A; 2KB4 A; 1U7V A; 3GQS A; 2JQL A; 4A4Y A; 2EH0 A; 2FEZ A; 3FM8 A; 1J4K A; 3V8N A; 3DSH A; #chains in the Genus database with same CATH homology 1DEV A; 3VA4 A; 3I6U A; 1J4L A; 2QV7 A; 4JIW D; 1K3N A; 1U7V B; 3I0M A; 4L02 A; 2AFF A; 4QCJ A; 4KU0 D; 1U7F A; 2BRF A; 1J4O A; 3UV0 A; 3ELV A; 5JEL A; 4WRR A; 1MK2 A; 5JEO A; 4JIV D; 1FHQ A; 5DJO A; 3VZB A; 1YGS A; 2PIE A; 3ELS A; 1K3J A; 1J4P A; 3I0N A; 1K2M A; 1FHR A; 1K2N A; 3UMZ A; 1U7F B; 3T5P A; 4H87 A; 1ZOQ A; 1MZK A; 5JEK A; 2KFU A; 3VPY A; 4EGX A; 2JKD A; 3VZC A; 2KKL A; 1WLN A; 3KT9 A; 3HUF A; 1KHU A; 3UNM A; 4WER A; 1LGP A; 4EJQ A; 5E50 A; 2G1L A; 4V24 A; 1R21 A; 2JPE A; 1DD1 A; 1UJX A; 3S40 A; 1DMZ A; 2CSW A; 1LGQ A; 3UOT A; 4R9P A; 1QU5 A; 2P1R A; 5BVI A; 1G6G A; 1G3G A; 1QWT A; 3VZD A; 4G2S A; 1G88 A; 1WV3 A; 4D9V A; 1J4Q A; 2JGR A; 2FF4 A; 3MDB A; 2LC1 A; 3POA A; 1MJS A; 2JQI A; 1J2F A; 1K3Q A; 5A8I A; 3HUE A; 2BON A; 3OUN A; 2QVL A; 1UHT A; 3I6W A; 1MR1 A; 3GMJ A; 1YJM A; 3UN0 A; 1GXC A; 3A77 A; 1YJ5 C; 2W3O A; 2KB3 A; 5JEM A; 3UNN A; 3PO8 A; 2XXS A; 5C4V A; 5JEJ A; 4JON A; 5JER A; 2JQJ A; 3DIT A; 3VA1 A; 4A0E A; 1KHX A; 2XT9 B; 2A0T A; 3HX1 A; 2KB4 A; 1U7V A; 3GQS A; 2JQL A; 4A4Y A; 2EH0 A; 2FEZ A; 3FM8 A; 1J4K A; 3DSH A;
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