The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
20
|
sequence length |
107
|
structure length |
107
|
Chain Sequence |
SWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure and interactions of the cytoplasmic domain of the Yersinia type III secretion protein YscD.
pubmed doi rcsb |
| molecule keywords |
YscD; putative type III secretion protein
|
| molecule tags |
Unknown function
|
| source organism |
Yersinia pseudotuberculosis
|
| total genus |
20
|
| structure length |
107
|
| sequence length |
107
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2012-01-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF16697 | Yop-YscD_cpl | Inner membrane component of T3SS, cytoplasmic domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Tumour Suppressor Smad4 | Tumour Suppressor Smad4 |
#chains in the Genus database with same CATH superfamily 2BRF A; 5A8I A; 2EH0 A; 3FM8 A; 5E50 A; 3MDB A; 3KT9 A; 5DJO A; 2KB4 A; 3UOT A; 2XT9 B; 3UN0 A; 1MZK A; 3I6W A; 4EGX A; 3I0N A; 1DMZ A; 3I0M A; 3I6U A; 1K2M A; 2CSW A; 3VA1 A; 2A0T A; 2G1L A; 2JKD A; 2KFU A; 3VPY A; 3UMZ A; 1FHR A; 1GXC A; 2KB3 A; 1J4P A; 2LC1 A; 4A0E A; 4D9V A; 2W3O A; 1R21 A; 2JQJ A; 1YJM A; 2AFF A; 2JQI A; 1UHT A; 1LGQ A; 1J4Q A; 2PIE A; 1G6G A; 1FHQ A; 3UV0 A; 1G3G A; 4H87 A; 3PO8 A; 1K3Q A; 1K3J A; 1J4O A; 1WV3 A; 3GQS A; 1WLN A; 1YJ5 C; 1LGP A; 2JQL A; 4JON A; 2KKL A; 2JPE A; 4QCJ A; 1J4K A; 1K2N A; 3ELV A; 3VA4 A; 4G2S A; 3OUN A; 2FEZ A; 2FF4 A; 1J4L A; 3HUF A; 3UNM A; 3UNN A; 1UJX A; 3POA A; 3HUE A; 3ELS A; 1QU5 A; 4EJQ A; 1K3N A; 3HX1 A; #chains in the Genus database with same CATH topology 5EJF A; 2BRF A; 1J2F A; 2QV7 A; 3PFN A; 3GMJ A; 1KHX A; 4WER A; 5A8I A; 2EH0 A; 4WRR A; 3FM8 A; 2I2C A; 5DHR A; 5JEO A; 2Q5F A; 1Z0S A; 4R9P A; 5E50 A; 1U7F A; 3MDB A; 3VZD A; 1MK2 A; 1U7F B; 3KT9 A; 5DJO A; 2KB4 A; 3UOT A; 5JEM A; 3T5P A; 2XT9 B; 5JEJ A; 3UN0 A; 3AFO A; 1U7V B; 2I2B A; 3V8N A; 1Y3H A; 2I2F A; 1G88 A; 1MZK A; 3A77 A; 3I6W A; 4EGX A; 3I0N A; 1DMZ A; 2I2D A; 3I0M A; 5JEK A; 3I6U A; 1K2M A; 1YT5 A; 3V7W A; 2JGR A; 5DHP A; 5EJH A; 2I29 A; 1MR1 A; 2CSW A; 3VZB A; 3V7Y A; 3VA1 A; 4V24 A; 3V8Q A; 2A0T A; 2G1L A; 2AN1 A; 2JKD A; 2KFU A; 3V80 A; 3VPY A; 4DY6 A; 2QVL A; 1DEV A; 3UMZ A; 1FHR A; 1Y3I A; 1GXC A; 2KB3 A; 3VZC A; 4KU0 D; 4A4Y A; 1J4P A; 2LC1 A; 4A0E A; 4D9V A; 2W3O A; 1R21 A; 1KHU A; 1YGS A; 1ZOQ A; 2JQJ A; 1YJM A; 2AFF A; 2I1W A; 5DHT A; 2JQI A; 3V8R A; 1UHT A; 1LGQ A; 5BVI A; 5DHQ A; 1J4Q A; 2PIE A; 1G6G A; 1FHQ A; 3UV0 A; 1G3G A; 2P1R A; 4H87 A; 2BON A; 3DSH A; 3PO8 A; 1K3Q A; 5EJI A; 1K3J A; 1J4O A; 5C4V A; 1U0T A; 4HAO A; 1WV3 A; 3GQS A; 3V8P A; 1WLN A; 1YJ5 C; 2I2A A; 1LGP A; 1DD1 A; 2JQL A; 5JEL A; 4JON A; 2KKL A; 2JPE A; 4JIV D; 4QCJ A; 1J4K A; 1K2N A; 3ELV A; 4L02 A; 1SUW A; 2XXS A; 3V8M A; 3DIT A; 1U0R A; 3VA4 A; 4G2S A; 5DHU A; 3OUN A; 2FEZ A; 3V7U A; 1Z0U A; 2FF4 A; 1J4L A; 1QWT A; 5EJG A; 3HUF A; 5JER A; 3UNM A; 3UNN A; 1UJX A; 1MJS A; 1U7V A; 3POA A; 3HUE A; 3ELS A; 1Z0Z A; 4JIW D; 1QU5 A; 5DHS A; 4EJQ A; 1K3N A; 3HX1 A; 3S40 A; #chains in the Genus database with same CATH homology 2BRF A; 1J2F A; 2QV7 A; 3GMJ A; 1KHX A; 4WER A; 5A8I A; 2EH0 A; 4WRR A; 3FM8 A; 5JEO A; 4R9P A; 5E50 A; 1U7F A; 3MDB A; 3VZD A; 1MK2 A; 1U7F B; 3KT9 A; 5DJO A; 2KB4 A; 3UOT A; 5JEM A; 3T5P A; 2XT9 B; 5JEJ A; 3UN0 A; 1U7V B; 1G88 A; 1MZK A; 3A77 A; 3I6W A; 4EGX A; 3I0N A; 1DMZ A; 3I0M A; 5JEK A; 3I6U A; 1K2M A; 2JGR A; 1MR1 A; 2CSW A; 3VZB A; 3VA1 A; 4V24 A; 2A0T A; 2G1L A; 2JKD A; 2KFU A; 3VPY A; 2QVL A; 1DEV A; 3UMZ A; 1FHR A; 1GXC A; 2KB3 A; 3VZC A; 4KU0 D; 4A4Y A; 1J4P A; 2LC1 A; 4A0E A; 4D9V A; 2W3O A; 1R21 A; 1KHU A; 1YGS A; 1ZOQ A; 2JQJ A; 1YJM A; 2AFF A; 2JQI A; 1UHT A; 1LGQ A; 5BVI A; 1J4Q A; 2PIE A; 1G6G A; 1FHQ A; 3UV0 A; 1G3G A; 2P1R A; 4H87 A; 2BON A; 3DSH A; 3PO8 A; 1K3Q A; 1K3J A; 1J4O A; 5C4V A; 1WV3 A; 3GQS A; 1WLN A; 1YJ5 C; 1LGP A; 1DD1 A; 2JQL A; 5JEL A; 4JON A; 2KKL A; 2JPE A; 4JIV D; 4QCJ A; 1J4K A; 1K2N A; 3ELV A; 4L02 A; 2XXS A; 3DIT A; 3VA4 A; 4G2S A; 3OUN A; 2FEZ A; 2FF4 A; 1J4L A; 1QWT A; 3HUF A; 5JER A; 3UNM A; 3UNN A; 1UJX A; 1MJS A; 1U7V A; 3POA A; 3HUE A; 3ELS A; 4JIW D; 1QU5 A; 4EJQ A; 1K3N A; 3HX1 A; 3S40 A;
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