4R19 | Genus

Total Genus 93

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	93
sequence length	335
structure length	321
Chain Sequence	NYMGNPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSNTTFLTPVATGQYLKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVYDDKDKKCHILYIAAQENNGPRYCMFCFRPAKDISFQNYTYLSKNVVDNWEKVCPRKNLQNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPKQYEQHLTDYEKIKEGFKNKNASMIKSAFLPTADRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIEVE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell invasion
source organism	Plasmodium falciparum 3d7
publication title	Structure and Dynamics of Apical Membrane Antigen 1 from Plasmodium falciparum FVO. pubmed doi rcsb
molecule keywords	Apical membrane antigen 1, AMA1
total genus	93
structure length	321
sequence length	335
chains with identical sequence	B
ec nomenclature
pdb deposition date	2014-08-04

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.50.4.10	Alpha Beta	3-Layer(bba) Sandwich	Hepatocyte Growth Factor	Hepatocyte Growth Factor	4r19A01

2YILA 4UAOA 4DURA 1HKYA 1Z40A 2LL4M 5CS9A 2QJ2A 2X2ZA 2Q8AA 2K13X 4Z0FA 5CSQA 1GMNA 2J8JA 3ZWZA 1YXEA 3SRIA 4Z0DA 1BHTA 5I25A 2Q8BA 1I8NA 4APLA 2HGFA 1NK1A 5CT1A 3HN4A 2J8LA 4R1CA 5CT3A 2YIOA 2YIPA 5CS3A 2Y8RA 3HMTA 2F83A 4Z0EA 1W8KA 3ZLEA 1GP9A 4R1AA 5COEA 5EODA 1W81A 3SP8A 3SRJA 5EOKA 4A5TS 4R19A 4IUAA 2QJ4A 2Z8WA 4R1BA 2LL3A 2Z8VA 4Z09A 3HMRA 4APMA 3HMSA 1GMOA 5CP9A 5CS5A 5CT2A 5CS1A 3MKPA 4UV6A
chains in the Genus database with same CATH superfamily

2YILA 4UAOA 4DURA 1HKYA 1Z40A 2LL4M 5CS9A 2QJ2A 2KL5A 2X2ZA 2Q8AA 2K13X 4Z0FA 5CSQA 1GMNA 2J8JA 4YIVA 3ZWZA 1YXEA 3SRIA 4Z0DA 1BHTA 5I25A 2Q8BA 1I8NA 4APLA 2HGFA 1NK1A 5CT1A 3HN4A 2J8LA 4R1CA 5CT3A 2YIOA 2YIPA 5CS3A 2Y8RA 3HMTA 2F83A 4Z0EA 1W8KA 3ZLEA 1GP9A 4R1AA 5COEA 5EODA 1W81A 3SP8A 3SRJA 5EOKA 4A5TS 4R19A 4IUAA 2QJ4A 2Z8WA 4R1BA 2LL3A 2Z8VA 4Z09A 3HMRA 4APMA 3HMSA 1GMOA 5CP9A 5CS5A 5CT2A 5CS1A 3MKPA 4YIZA 4UV6A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2YIL A;  4UAO A;  4DUR A;  1HKY A;  1Z40 A;  2LL4 M;  5CS9 A;  2QJ2 A;  2X2Z A;  2Q8A A;  2K13 X;  4Z0F A;  5CSQ A;  1GMN A;  2J8J A;  3ZWZ A;  1YXE A;  3SRI A;  4Z0D A;  1BHT A;  5I25 A;  2Q8B A;  1I8N A;  4APL A;  2HGF A;  1NK1 A;  5CT1 A;  3HN4 A;  2J8L A;  4R1C A;  5CT3 A;  2YIO A;  2YIP A;  5CS3 A;  2Y8R A;  3HMT A;  2F83 A;  4Z0E A;  1W8K A;  3ZLE A;  1GP9 A;  4R1A A;  5COE A;  5EOD A;  1W81 A;  3SP8 A;  3SRJ A;  5EOK A;  4A5T S;  4R19 A;  4IUA A;  2QJ4 A;  2Z8W A;  4R1B A;  2LL3 A;  2Z8V A;  4Z09 A;  3HMR A;  4APM A;  3HMS A;  1GMO A;  5CP9 A;  5CS5 A;  5CT2 A;  5CS1 A;  3MKP A;  4UV6 A; 
#chains in the Genus database with same CATH topology
 2YIL A;  4UAO A;  4DUR A;  1HKY A;  1Z40 A;  2LL4 M;  5CS9 A;  2QJ2 A;  2KL5 A;  2X2Z A;  2Q8A A;  2K13 X;  4Z0F A;  5CSQ A;  1GMN A;  2J8J A;  4YIV A;  3ZWZ A;  1YXE A;  3SRI A;  4Z0D A;  1BHT A;  5I25 A;  2Q8B A;  1I8N A;  4APL A;  2HGF A;  1NK1 A;  5CT1 A;  3HN4 A;  2J8L A;  4R1C A;  5CT3 A;  2YIO A;  2YIP A;  5CS3 A;  2Y8R A;  3HMT A;  2F83 A;  4Z0E A;  1W8K A;  3ZLE A;  1GP9 A;  4R1A A;  5COE A;  5EOD A;  1W81 A;  3SP8 A;  3SRJ A;  5EOK A;  4A5T S;  4R19 A;  4IUA A;  2QJ4 A;  2Z8W A;  4R1B A;  2LL3 A;  2Z8V A;  4Z09 A;  3HMR A;  4APM A;  3HMS A;  1GMO A;  5CP9 A;  5CS5 A;  5CT2 A;  5CS1 A;  3MKP A;  4YIZ A;  4UV6 A; 
#chains in the Genus database with same CATH homology
 2YIL A;  4UAO A;  4DUR A;  1HKY A;  1Z40 A;  2LL4 M;  5CS9 A;  2QJ2 A;  2KL5 A;  2X2Z A;  2Q8A A;  2K13 X;  4Z0F A;  5CSQ A;  1GMN A;  2J8J A;  4YIV A;  3ZWZ A;  1YXE A;  3SRI A;  4Z0D A;  1BHT A;  5I25 A;  2Q8B A;  1I8N A;  4APL A;  2HGF A;  1NK1 A;  5CT1 A;  3HN4 A;  2J8L A;  4R1C A;  5CT3 A;  2YIO A;  2YIP A;  5CS3 A;  2Y8R A;  3HMT A;  2F83 A;  4Z0E A;  1W8K A;  3ZLE A;  1GP9 A;  4R1A A;  5COE A;  5EOD A;  1W81 A;  3SP8 A;  3SRJ A;  5EOK A;  4A5T S;  4R19 A;  4IUA A;  2QJ4 A;  2Z8W A;  4R1B A;  2LL3 A;  2Z8V A;  4Z09 A;  3HMR A;  4APM A;  3HMS A;  1GMO A;  5CP9 A;  5CS5 A;  5CT2 A;  5CS1 A;  3MKP A;  4YIZ A;  4UV6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4R19A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN