4UAO | Genus

Total Genus 91

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	91
sequence length	336
structure length	332
Chain Sequence	MSNPWKAFMEKYDLERAHNSGIRIDLGEDAEVGNSKYRIPAGKCPVFGKGIVIENSKVSFLTPVATGAQRLKEGGFAFPNADDHISPITIANLKERYKENADLMKLNDIALCKTHAASFVIAEDQNTNYRHPAVYDEKEKTCYMLYLSAQENMGPRYCSPDSQNKDAMFCFKPDKNEKFDNLVYLSKNVRNDWENKCPRKNLGNAKFGLWVDGNCEEIPYVNEVEARSLRECNRIVFEASASDQPRQYEETDYEKIQEGFRQNNRDMIKSAFLPVGASDNFKSKGRGYNWANFDSVNNKCYIFNTKPTCLINDKNFFATTALSHPQEVDNEF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 332 atoms

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332 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell invasion
source organism	Plasmodium knowlesi
publication title	Crystal Structure of Plasmodium knowlesi Apical Membrane Antigen 1 and Its Complex with an Invasion-Inhibitory Monoclonal Antibody. pubmed doi rcsb
molecule keywords	Apical merozoite antigen 1
total genus	91
structure length	332
sequence length	336
ec nomenclature
pdb deposition date	2014-08-11

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.50.4.10	Alpha Beta	3-Layer(bba) Sandwich	Hepatocyte Growth Factor	Hepatocyte Growth Factor	4uaoA01

5CSQA 1BHTA 5CS3A 3SRIA 1I8NA 3ZWZA 5COEA 4Z0EA 1GMOA 1Z40A 5I25A 3MKPA 4R1AA 4APMA 3HMRA 3ZLEA 5CT3A 2J8JA 1W8KA 1W81A 2Y8RA 5EOKA 4Z09A 2QJ4A 2LL3A 2Z8WA 2X2ZA 4IUAA 2Q8AA 4UV6A 4R19A 5CS9A 2K13X 3HN4A 2YILA 5CS1A 5CS5A 5CT1A 4Z0DA 2YIOA 3SRJA 4APLA 2HGFA 2QJ2A 1GP9A 5EODA 5CT2A 2Q8BA 3SP8A 4DURA 1HKYA 2LL4M 4Z0FA 5CP9A 4A5TS 2F83A 2Z8VA 4R1BA 1GMNA 4UAOA 2YIPA 4R1CA 3HMTA 1NK1A 2J8LA 3HMSA 1YXEA
chains in the Genus database with same CATH superfamily

5CSQA 1BHTA 5CS3A 3SRIA 1I8NA 3ZWZA 5COEA 4Z0EA 1GMOA 4YIZA 1Z40A 5I25A 3MKPA 4R1AA 4APMA 3HMRA 3ZLEA 2KL5A 2J8JA 1W8KA 1W81A 2Y8RA 5CT3A 4Z09A 5EOKA 2QJ4A 2LL3A 2Z8WA 2X2ZA 4IUAA 2Q8AA 4UV6A 4R19A 5CS9A 2K13X 3HN4A 2YILA 5CS1A 5CS5A 4YIVA 5CT1A 4Z0DA 2YIOA 3SRJA 4APLA 2HGFA 2QJ2A 1GP9A 5EODA 5CT2A 2Q8BA 3SP8A 4DURA 1HKYA 2LL4M 4Z0FA 5CP9A 4A5TS 2F83A 2Z8VA 4R1BA 1GMNA 4UAOA 2YIPA 4R1CA 3HMTA 1NK1A 2J8LA 3HMSA 1YXEA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5CSQ A;  1BHT A;  5CS3 A;  3SRI A;  1I8N A;  3ZWZ A;  5COE A;  4Z0E A;  1GMO A;  1Z40 A;  5I25 A;  3MKP A;  4R1A A;  4APM A;  3HMR A;  3ZLE A;  5CT3 A;  2J8J A;  1W8K A;  1W81 A;  2Y8R A;  5EOK A;  4Z09 A;  2QJ4 A;  2LL3 A;  2Z8W A;  2X2Z A;  4IUA A;  2Q8A A;  4UV6 A;  4R19 A;  5CS9 A;  2K13 X;  3HN4 A;  2YIL A;  5CS1 A;  5CS5 A;  5CT1 A;  4Z0D A;  2YIO A;  3SRJ A;  4APL A;  2HGF A;  2QJ2 A;  1GP9 A;  5EOD A;  5CT2 A;  2Q8B A;  3SP8 A;  4DUR A;  1HKY A;  2LL4 M;  4Z0F A;  5CP9 A;  4A5T S;  2F83 A;  2Z8V A;  4R1B A;  1GMN A;  4UAO A;  2YIP A;  4R1C A;  3HMT A;  1NK1 A;  2J8L A;  3HMS A;  1YXE A; 
#chains in the Genus database with same CATH topology
 5CSQ A;  1BHT A;  5CS3 A;  3SRI A;  1I8N A;  3ZWZ A;  5COE A;  4Z0E A;  1GMO A;  4YIZ A;  1Z40 A;  5I25 A;  3MKP A;  4R1A A;  4APM A;  3HMR A;  3ZLE A;  2KL5 A;  2J8J A;  1W8K A;  1W81 A;  2Y8R A;  5CT3 A;  4Z09 A;  5EOK A;  2QJ4 A;  2LL3 A;  2Z8W A;  2X2Z A;  4IUA A;  2Q8A A;  4UV6 A;  4R19 A;  5CS9 A;  2K13 X;  3HN4 A;  2YIL A;  5CS1 A;  5CS5 A;  4YIV A;  5CT1 A;  4Z0D A;  2YIO A;  3SRJ A;  4APL A;  2HGF A;  2QJ2 A;  1GP9 A;  5EOD A;  5CT2 A;  2Q8B A;  3SP8 A;  4DUR A;  1HKY A;  2LL4 M;  4Z0F A;  5CP9 A;  4A5T S;  2F83 A;  2Z8V A;  4R1B A;  1GMN A;  4UAO A;  2YIP A;  4R1C A;  3HMT A;  1NK1 A;  2J8L A;  3HMS A;  1YXE A; 
#chains in the Genus database with same CATH homology
 5CSQ A;  1BHT A;  5CS3 A;  3SRI A;  1I8N A;  3ZWZ A;  5COE A;  4Z0E A;  1GMO A;  4YIZ A;  1Z40 A;  5I25 A;  3MKP A;  4R1A A;  4APM A;  3HMR A;  3ZLE A;  2KL5 A;  2J8J A;  1W8K A;  1W81 A;  2Y8R A;  5CT3 A;  4Z09 A;  5EOK A;  2QJ4 A;  2LL3 A;  2Z8W A;  2X2Z A;  4IUA A;  2Q8A A;  4UV6 A;  4R19 A;  5CS9 A;  2K13 X;  3HN4 A;  2YIL A;  5CS1 A;  5CS5 A;  4YIV A;  5CT1 A;  4Z0D A;  2YIO A;  3SRJ A;  4APL A;  2HGF A;  2QJ2 A;  1GP9 A;  5EOD A;  5CT2 A;  2Q8B A;  3SP8 A;  4DUR A;  1HKY A;  2LL4 M;  4Z0F A;  5CP9 A;  4A5T S;  2F83 A;  2Z8V A;  4R1B A;  1GMN A;  4UAO A;  2YIP A;  4R1C A;  3HMT A;  1NK1 A;  2J8L A;  3HMS A;  1YXE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4UAOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN