1BPRA

Nmr structure of the substrate binding domain of dnak, minimized average structure
Total Genus 17
204060801001201401600246810121416
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
173
structure length
173
Chain Sequence
SIEGRVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Molecular chaperone
source organism Escherichia coli
publication title NMR solution structure of the 21 kDa chaperone protein DnaK substrate binding domain: a preview of chaperone-protein interaction.
pubmed doi rcsb
molecule keywords DNAK
total genus 17
structure length 173
sequence length 173
ec nomenclature
pdb deposition date 1998-08-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 1bprA00
1DG4A 4R5KA 3DPQA 7HSCA 1Q5LA 4EZYA 2BPRA 4PO2A 1CKRA 4E81A 3N8EA 3DPPA 3QNJA 5TKYA 4B9QA 4EZNA 4EZTA 4WV7A 4HY9A 4JN4A 5E84A 3H0XA 3D2EA 4JWEA 4R5JA 4EZSA 2QXLA 1DKYA 3DQGA 2OP6A 3C7NA 4JWIA 4FL9A 4WV5A 4R5GA 2V7YA 2KHOA 4R5LA 4EZUA 3DOBA 3DPOA 4F01A 1YUWA 4EZRA 4EZOA 4JNEA 1BPRA 4EZXA 4JWCA 4JNFA 4EZPA 4EZWA 4HYBA 4EZVA 1DKXA 4F00A 4JWDA 4R5IA 3D2FA 4EZQA 4EZZA 1U00A 3C7NB 1DKZA
chains in the Genus database with same CATH superfamily
1DG4A 4R5KA 3DPQA 7HSCA 1Q5LA 4EZYA 2BPRA 4PO2A 1CKRA 4E81A 3N8EA 3DPPA 3QNJA 5TKYA 4B9QA 4EZNA 4EZTA 4WV7A 4HY9A 4JN4A 5E84A 3SBSA 4MQDA 3H0XA 3D2EA 4JWEA 4R5JA 4EZSA 2QXLA 1DKYA 3DQGA 4ILHB 2OP6A 4ILIA 3C7NA 4JWIA 4FL9A 4WV5A 4R5GA 2V7YA 2KHOA 4R5LA 4ILGA 3DOBA 3DPOA 4EZUA 3ZEFA 4F01A 1YUWA 4EZRA 4EZOA 4JNEA 1BPRA 4EZXA 4JWCA 4JNFA 4EZPA 4EZWA 4HYBA 4EZVA 1DKXA 4F00A 4JWDA 4R5IA 3D2FA 4EZQA 4EZZA 4I43A 1U00A 3C7NB 1DKZA 3SBTB
chains in the Genus database with same CATH topology
1DG4A 4R5KA 3DPQA 7HSCA 1Q5LA 4EZYA 2BPRA 4PO2A 1CKRA 4E81A 3N8EA 3DPPA 3QNJA 5TKYA 4B9QA 4EZNA 4EZTA 4WV7A 4HY9A 4JN4A 5E84A 3SBSA 4MQDA 3H0XA 3D2EA 4JWEA 4R5JA 4EZSA 2QXLA 1DKYA 3DQGA 4ILHB 2OP6A 4ILIA 3C7NA 4JWIA 4FL9A 4WV5A 4R5GA 2V7YA 2KHOA 4R5LA 4ILGA 3DOBA 3DPOA 4EZUA 3ZEFA 4F01A 1YUWA 4EZRA 4EZOA 4JNEA 1BPRA 4EZXA 4JWCA 4JNFA 4EZPA 4EZWA 4HYBA 4EZVA 1DKXA 4F00A 4JWDA 4R5IA 3D2FA 4EZQA 4EZZA 4I43A 1U00A 3C7NB 1DKZA 3SBTB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DG4 A;  4R5K A;  3DPQ A;  7HSC A;  1Q5L A;  4EZY A;  2BPR A;  4PO2 A;  1CKR A;  4E81 A;  3N8E A;  3DPP A;  3QNJ A;  5TKY A;  4B9Q A;  4EZN A;  4EZT A;  4WV7 A;  4HY9 A;  4JN4 A;  5E84 A;  3H0X A;  3D2E A;  4JWE A;  4R5J A;  4EZS A;  2QXL A;  1DKY A;  3DQG A;  2OP6 A;  3C7N A;  4JWI A;  4FL9 A;  4WV5 A;  4R5G A;  2V7Y A;  2KHO A;  4R5L A;  4EZU A;  3DOB A;  3DPO A;  4F01 A;  1YUW A;  4EZR A;  4EZO A;  4JNE A;  1BPR A;  4EZX A;  4JWC A;  4JNF A;  4EZP A;  4EZW A;  4HYB A;  4EZV A;  1DKX A;  4F00 A;  4JWD A;  4R5I A;  3D2F A;  4EZQ A;  4EZZ A;  1U00 A;  3C7N B;  1DKZ A; 
#chains in the Genus database with same CATH topology
 1DG4 A;  4R5K A;  3DPQ A;  7HSC A;  1Q5L A;  4EZY A;  2BPR A;  4PO2 A;  1CKR A;  4E81 A;  3N8E A;  3DPP A;  3QNJ A;  5TKY A;  4B9Q A;  4EZN A;  4EZT A;  4WV7 A;  4HY9 A;  4JN4 A;  5E84 A;  3SBS A;  4MQD A;  3H0X A;  3D2E A;  4JWE A;  4R5J A;  4EZS A;  2QXL A;  1DKY A;  3DQG A;  4ILH B;  2OP6 A;  4ILI A;  3C7N A;  4JWI A;  4FL9 A;  4WV5 A;  4R5G A;  2V7Y A;  2KHO A;  4R5L A;  4ILG A;  3DOB A;  3DPO A;  4EZU A;  3ZEF A;  4F01 A;  1YUW A;  4EZR A;  4EZO A;  4JNE A;  1BPR A;  4EZX A;  4JWC A;  4JNF A;  4EZP A;  4EZW A;  4HYB A;  4EZV A;  1DKX A;  4F00 A;  4JWD A;  4R5I A;  3D2F A;  4EZQ A;  4EZZ A;  4I43 A;  1U00 A;  3C7N B;  1DKZ A;  3SBT B; 
#chains in the Genus database with same CATH homology
 1DG4 A;  4R5K A;  3DPQ A;  7HSC A;  1Q5L A;  4EZY A;  2BPR A;  4PO2 A;  1CKR A;  4E81 A;  3N8E A;  3DPP A;  3QNJ A;  5TKY A;  4B9Q A;  4EZN A;  4EZT A;  4WV7 A;  4HY9 A;  4JN4 A;  5E84 A;  3SBS A;  4MQD A;  3H0X A;  3D2E A;  4JWE A;  4R5J A;  4EZS A;  2QXL A;  1DKY A;  3DQG A;  4ILH B;  2OP6 A;  4ILI A;  3C7N A;  4JWI A;  4FL9 A;  4WV5 A;  4R5G A;  2V7Y A;  2KHO A;  4R5L A;  4ILG A;  3DOB A;  3DPO A;  4EZU A;  3ZEF A;  4F01 A;  1YUW A;  4EZR A;  4EZO A;  4JNE A;  1BPR A;  4EZX A;  4JWC A;  4JNF A;  4EZP A;  4EZW A;  4HYB A;  4EZV A;  1DKX A;  4F00 A;  4JWD A;  4R5I A;  3D2F A;  4EZQ A;  4EZZ A;  4I43 A;  1U00 A;  3C7N B;  1DKZ A;  3SBT B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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