4EZNA

Crystal structure of the substrate binding domain of e.coli dnak in complex with pyrrhocoricin
Total Genus 60
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
211
structure length
211
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLM
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/peptide binding protein
molecule keywords Chaperone protein DnaK
publication title Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK.
pubmed doi rcsb
source organism Escherichia coli
total genus 60
structure length 211
sequence length 211
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4eznA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4eznA01
4R5KA 3T4AG 3D2FA 3T49A 4EZQA 4EZNA 2QFFA 4EZPA 4JWEA 4H6IA 3N8EA 4JWDA 3QNJA 4EZSA 4R5JA 3DPOA 4WV7A 3C7NA 4E81A 1BPRA 1DKXA 4EZXA 2BPRA 1DKZA 4WV5A 4B9QA 1Q5LA 2WINM 4EZYA 4EZTA 4JNEA 4EZUA 4R5LA 7HSCA 5E84A 3DOBA 3T46A 4JNFA 3D2EA 1YUWA 4EZOA 2V7YA 4R5IA 3H0XA 3DPPA 4F00A 1DG4A 1CKRA 4F01A 3T48A 1U00A 4JWCA 4PO2A 3C7NB 4EZRA 2KHOA 1DKYA 2OP6A 4EZWA 4JWIA 4FL9A 2QXLA 3DPQA 4R5GA 4EZVA 3OHXM 4EZZA 5TKYA 4JN4A 3T47A 4H6HA 3L3OM 4HY9A 3DQGA 4HYBA
chains in the Genus database with same CATH superfamily
4JWEA 2F1AA 1TQTA 3BVXA 2F7OA 1OA0A 1I4TA 4EZWA 2OBLA 3EJTA 2YIBA 3DQGA 2YLLA 3DDGA 2YI9A 2YKTA 5KBPA 3UITA 4EZSA 3BVVA 1R33A 3ER9B 4WPEA 2WYHA 3RPMA 3DOBA 2RAIA 3L3PA 3D2EA 4JWCA 2OP6A 3DDFA 4EZVA 3CV5A 1HWWA 4R5KA 4G6QA 3QNIA 2LXYA 3ZEFA 4HR1A 4E3CA 2MI7A 2D1LA 3O3NB 3G9GA 4F01A 2ZXQA 3DYTA 3KDRA 4H6HA 3GI7A 4UDXX 4EZNA 1R34A 3CZSA 3QNJA 3DX1A 2F7RA 2RAJA 4WV5A 4JLCA 2GF4A 3DX4A 3SBTB 4EZTA 3DPPA 4IWQA 2O0I1 1CKRA 4FL9A 2KHOA 4JL9A 3DPQA 3HAIA 1E9VA 1OA1A 1TQWA 3O3OB 1TQUA 3OWGA 3Q0KA 3BVTA 4FZOA 2WINM 3B52X 2YLAA 4AZ5A 3EJRA 2OZNB 4AZ7A 2D4CA 3I39X 2N3KA 3QWEA 4AKVA 3D50A 4JWIA 2QXLA 4IM3A 1ZWWA 3L3OM 4UDYX 4IM0A 3CKDA 2OO2A 4EZUA 3QE6A 4AZCB 4AZIA 1I4DA 3H0XA 2F7PA 2YIAA 3DX3A 4KIKA 1I49A 4FZSA 4H6IA 2YL8A 4JWDA 4I1QA 4BNEA 4KIKB 4DCNC 1JQKA 2RT6A 4JNEA 2GAFD 1YWMA 7HSCA 1GNTA 4I43A 1HTYA 3KAWA 4ILGA 1DG4A 4PO2A 1OAOA 1WDZA 3ZEDA 3EJPA 3OHXM 3LMFA 1GNLA 1URUA 4NSWA 3T49A 4EZQA 2Z0VA 3D52A 2Q13A 3VEAA 1BPRA 1DKXA 2BPRA 3HAJA 3ACOA 2JNKA 1Q5LA 4MQDA 3PLTA 4IM2A 1UPXA 3T46A 1X03A 3RV1A 1QWNA 2GA9D 4HR1B 3A98A 2FICA 3B51X 4DYLA 2F7QA 1MJGA 3OK8A 4WV7A 2X5CA 3LLLA 3C7NA 4AVMA 4EZXA 2EWFA 2X3VA 3BUPA 1TQSA 3BUBA 4FZPA 4EZOA 3VKHA 2EX3B 3BUIA 3QA8A 2QKWA 1U00A 2OW6A 3C7NB 2RAKA 1PS3A 3VEBA 4AZHA 2C08A 3B53X 3I04A 4ILIA 1DKZA 2X3WA 4FM3A 3Q84A 3T48A 3RV0A 2OW7A 4EZRA 1SU7A 1X04A 2FYVA 2OBMA 2PY6A 2EFLA 4IWPA 4ILHB 2Q12A 3SYVA 1SU6A 2Z8YA 4ATMA 4WPCA 3DPOA 2JNSA 1QX1A 2ND1A 1HXKA 1E2UA 1SU8A 4F00A 3CZNA 2F1BA 2YL5A 3CVRA 4IW0A 5TKYA 5C5BA 2X3XA 2ELBA 3D2FA 3SBSA 2NCZA 1QWUA 1LQ7A 4E81A 3EJUA 1SUFA 5C5BB 2PMRA 5E84A 3ER8C 4IWOA 1R5EA 4EZZA 3BVUA 3HAHA 2QFFA 4AZ6A 4AZBA 2YI8A 2ND0A 3SOGA 3BUQA 3BLBA 3I2WA 3ERCC 2EFKA 1YUWA 2V7YA 3LVTA 1E1DA 3D4YA 3M3WA 3BUDA 4R5GA 3BVWA 3T47A 3D4ZA 1TQVA 3F7WA 3O3MB 3N8EA 1W9MA 4H8SA 4B9QA 2V0OA 1O7DC 1I4LA 2F18A 1ZYLA 2Z0OA 4NPHA 3EJQA 3DX0A 4R5JA 5FLEX 4EZYA 4R5LA 2YIVX 2Z0NA 4D8JA 2WYIA 4NQIA 4AZGA 3DX2A 1DKYA 3D51A 1GN9A 3T4AG 1O7DB 2ALWA 4EZPA 3EJSA 3CAZA 2YL6A 3KAVA 4M0MA 5FIGA 3FD9A 4JNFA 2LM0A 4R5IA 3ABHA 2YL9A 1Y2OA 4JN4A 4HY9A 3I01A 4HYBA 4AZCA
chains in the Genus database with same CATH topology
1OA1A 3O3OB 3B51X 2QFFA 4JWEA 1MJGA 2YI8A 2ND0A 4WV7A 2X5CA 3C7NA 3OWGA 4EZXA 2EWFA 1OA0A 2WINM 3A98A 3B52X 3ERCC 1YUWA 4EZOA 3VKHA 2EX3B 2V7YA 3QA8A 1U00A 3C7NB 3I39X 2N3KA 1E1DA 4EZWA 4JWIA 2OBLA 2QXLA 4R5GA 2YIBA 4IM3A 3T47A 3L3OM 3DQGA 4UDYX 3F7WA 2YI9A 4IM0A 3O3MB 3VEBA 3N8EA 1W9MA 3UITA 4EZSA 3I04A 3B53X 4ILIA 1DKZA 4B9QA 3ER9B 4EZUA 3DOBA 4FM3A 3D2EA 3H0XA 2YIAA 3T48A 1ZYLA 4JWCA 3RV0A 4EZRA 2OP6A 1SU7A 2PY6A 2OBMA 4KIKA 4EZVA 4IWPA 4ILHB 4R5KA 1SU6A 2Z8YA 4NPHA 4G6QA 4H6IA 4JWDA 3ZEFA 4R5JA 3DPOA 4HR1A 4KIKB 5FLEX 1JQKA 4E3CA 4EZYA 2JNSA 2RT6A 4JNEA 2GAFD 2ND1A 4R5LA 7HSCA 1E2UA 1SU8A 1GNTA 4I43A 2YIVX 4D8JA 3KAWA 3O3NB 4F00A 4ILGA 1DG4A 4F01A 4PO2A 1OAOA 3ZEDA 1DKYA 4IW0A 3OHXM 5TKYA 3KDRA 4H6HA 3LMFA 3GI7A 1GNLA 1GN9A 3T4AG 3D2FA 4UDXX 3T49A 4EZNA 4EZQA 3SBSA 4EZPA 2NCZA 3QNJA 3VEAA 4E81A 1BPRA 1DKXA 1SUFA 4JLCA 2BPRA 4WV5A 3KAVA 1Q5LA 4MQDA 4M0MA 3SBTB 4EZTA 5E84A 5FIGA 4IM2A 1UPXA 3FD9A 3T46A 3ER8C 4IWOA 4JNFA 2LM0A 3RV1A 4R5IA 3DPPA 2GA9D 4IWQA 1CKRA 4HR1B 4FL9A 2KHOA 4JL9A 3DPQA 4EZZA 4JN4A 4HY9A 1E9VA 3I01A 4HYBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4R5K A;  3T4A G;  3D2F A;  3T49 A;  4EZQ A;  4EZN A;  2QFF A;  4EZP A;  4JWE A;  4H6I A;  3N8E A;  4JWD A;  3QNJ A;  4EZS A;  4R5J A;  3DPO A;  4WV7 A;  3C7N A;  4E81 A;  1BPR A;  1DKX A;  4EZX A;  2BPR A;  1DKZ A;  4WV5 A;  4B9Q A;  1Q5L A;  2WIN M;  4EZY A;  4EZT A;  4JNE A;  4EZU A;  4R5L A;  7HSC A;  5E84 A;  3DOB A;  3T46 A;  4JNF A;  3D2E A;  1YUW A;  4EZO A;  2V7Y A;  4R5I A;  3H0X A;  3DPP A;  4F00 A;  1DG4 A;  1CKR A;  4F01 A;  3T48 A;  1U00 A;  4JWC A;  4PO2 A;  3C7N B;  4EZR A;  2KHO A;  1DKY A;  2OP6 A;  4EZW A;  4JWI A;  4FL9 A;  2QXL A;  3DPQ A;  4R5G A;  4EZV A;  3OHX M;  4EZZ A;  5TKY A;  4JN4 A;  3T47 A;  4H6H A;  3L3O M;  4HY9 A;  3DQG A;  4HYB A; 
#chains in the Genus database with same CATH topology
 4JWE A;  2F1A A;  1TQT A;  3BVX A;  2F7O A;  1OA0 A;  1I4T A;  4EZW A;  2OBL A;  3EJT A;  2YIB A;  3DQG A;  2YLL A;  3DDG A;  2YI9 A;  2YKT A;  5KBP A;  3UIT A;  4EZS A;  3BVV A;  1R33 A;  3ER9 B;  4WPE A;  2WYH A;  3RPM A;  3DOB A;  2RAI A;  3L3P A;  3D2E A;  4JWC A;  2OP6 A;  3DDF A;  4EZV A;  3CV5 A;  1HWW A;  4R5K A;  4G6Q A;  3QNI A;  2LXY A;  3ZEF A;  4HR1 A;  4E3C A;  2MI7 A;  2D1L A;  3O3N B;  3G9G A;  4F01 A;  2ZXQ A;  3DYT A;  3KDR A;  4H6H A;  3GI7 A;  4UDX X;  4EZN A;  1R34 A;  3CZS A;  3QNJ A;  3DX1 A;  2F7R A;  2RAJ A;  4WV5 A;  4JLC A;  2GF4 A;  3DX4 A;  3SBT B;  4EZT A;  3DPP A;  4IWQ A;  2O0I 1;  1CKR A;  4FL9 A;  2KHO A;  4JL9 A;  3DPQ A;  3HAI A;  1E9V A;  1OA1 A;  1TQW A;  3O3O B;  1TQU A;  3OWG A;  3Q0K A;  3BVT A;  4FZO A;  2WIN M;  3B52 X;  2YLA A;  4AZ5 A;  3EJR A;  2OZN B;  4AZ7 A;  2D4C A;  3I39 X;  2N3K A;  3QWE A;  4AKV A;  3D50 A;  4JWI A;  2QXL A;  4IM3 A;  1ZWW A;  3L3O M;  4UDY X;  4IM0 A;  3CKD A;  2OO2 A;  4EZU A;  3QE6 A;  4AZC B;  4AZI A;  1I4D A;  3H0X A;  2F7P A;  2YIA A;  3DX3 A;  4KIK A;  1I49 A;  4FZS A;  4H6I A;  2YL8 A;  4JWD A;  4I1Q A;  4BNE A;  4KIK B;  4DCN C;  1JQK A;  2RT6 A;  4JNE A;  2GAF D;  1YWM A;  7HSC A;  1GNT A;  4I43 A;  1HTY A;  3KAW A;  4ILG A;  1DG4 A;  4PO2 A;  1OAO A;  1WDZ A;  3ZED A;  3EJP A;  3OHX M;  3LMF A;  1GNL A;  1URU A;  4NSW A;  3T49 A;  4EZQ A;  2Z0V A;  3D52 A;  2Q13 A;  3VEA A;  1BPR A;  1DKX A;  2BPR A;  3HAJ A;  3ACO A;  2JNK A;  1Q5L A;  4MQD A;  3PLT A;  4IM2 A;  1UPX A;  3T46 A;  1X03 A;  3RV1 A;  1QWN A;  2GA9 D;  4HR1 B;  3A98 A;  2FIC A;  3B51 X;  4DYL A;  2F7Q A;  1MJG A;  3OK8 A;  4WV7 A;  2X5C A;  3LLL A;  3C7N A;  4AVM A;  4EZX A;  2EWF A;  2X3V A;  3BUP A;  1TQS A;  3BUB A;  4FZP A;  4EZO A;  3VKH A;  2EX3 B;  3BUI A;  3QA8 A;  2QKW A;  1U00 A;  2OW6 A;  3C7N B;  2RAK A;  1PS3 A;  3VEB A;  4AZH A;  2C08 A;  3B53 X;  3I04 A;  4ILI A;  1DKZ A;  2X3W A;  4FM3 A;  3Q84 A;  3T48 A;  3RV0 A;  2OW7 A;  4EZR A;  1SU7 A;  1X04 A;  2FYV A;  2OBM A;  2PY6 A;  2EFL A;  4IWP A;  4ILH B;  2Q12 A;  3SYV A;  1SU6 A;  2Z8Y A;  4ATM A;  4WPC A;  3DPO A;  2JNS A;  1QX1 A;  2ND1 A;  1HXK A;  1E2U A;  1SU8 A;  4F00 A;  3CZN A;  2F1B A;  2YL5 A;  3CVR A;  4IW0 A;  5TKY A;  5C5B A;  2X3X A;  2ELB A;  3D2F A;  3SBS A;  2NCZ A;  1QWU A;  1LQ7 A;  4E81 A;  3EJU A;  1SUF A;  5C5B B;  2PMR A;  5E84 A;  3ER8 C;  4IWO A;  1R5E A;  4EZZ A;  3BVU A;  3HAH A;  2QFF A;  4AZ6 A;  4AZB A;  2YI8 A;  2ND0 A;  3SOG A;  3BUQ A;  3BLB A;  3I2W A;  3ERC C;  2EFK A;  1YUW A;  2V7Y A;  3LVT A;  1E1D A;  3D4Y A;  3M3W A;  3BUD A;  4R5G A;  3BVW A;  3T47 A;  3D4Z A;  1TQV A;  3F7W A;  3O3M B;  3N8E A;  1W9M A;  4H8S A;  4B9Q A;  2V0O A;  1O7D C;  1I4L A;  2F18 A;  1ZYL A;  2Z0O A;  4NPH A;  3EJQ A;  3DX0 A;  4R5J A;  5FLE X;  4EZY A;  4R5L A;  2YIV X;  2Z0N A;  4D8J A;  2WYI A;  4NQI A;  4AZG A;  3DX2 A;  1DKY A;  3D51 A;  1GN9 A;  3T4A G;  1O7D B;  2ALW A;  4EZP A;  3EJS A;  3CAZ A;  2YL6 A;  3KAV A;  4M0M A;  5FIG A;  3FD9 A;  4JNF A;  2LM0 A;  4R5I A;  3ABH A;  2YL9 A;  1Y2O A;  4JN4 A;  4HY9 A;  3I01 A;  4HYB A;  4AZC A; 
#chains in the Genus database with same CATH homology
 1OA1 A;  3O3O B;  3B51 X;  2QFF A;  4JWE A;  1MJG A;  2YI8 A;  2ND0 A;  4WV7 A;  2X5C A;  3C7N A;  3OWG A;  4EZX A;  2EWF A;  1OA0 A;  2WIN M;  3A98 A;  3B52 X;  3ERC C;  1YUW A;  4EZO A;  3VKH A;  2EX3 B;  2V7Y A;  3QA8 A;  1U00 A;  3C7N B;  3I39 X;  2N3K A;  1E1D A;  4EZW A;  4JWI A;  2OBL A;  2QXL A;  4R5G A;  2YIB A;  4IM3 A;  3T47 A;  3L3O M;  3DQG A;  4UDY X;  3F7W A;  2YI9 A;  4IM0 A;  3O3M B;  3VEB A;  3N8E A;  1W9M A;  3UIT A;  4EZS A;  3I04 A;  3B53 X;  4ILI A;  1DKZ A;  4B9Q A;  3ER9 B;  4EZU A;  3DOB A;  4FM3 A;  3D2E A;  3H0X A;  2YIA A;  3T48 A;  1ZYL A;  4JWC A;  3RV0 A;  4EZR A;  2OP6 A;  1SU7 A;  2PY6 A;  2OBM A;  4KIK A;  4EZV A;  4IWP A;  4ILH B;  4R5K A;  1SU6 A;  2Z8Y A;  4NPH A;  4G6Q A;  4H6I A;  4JWD A;  3ZEF A;  4R5J A;  3DPO A;  4HR1 A;  4KIK B;  5FLE X;  1JQK A;  4E3C A;  4EZY A;  2JNS A;  2RT6 A;  4JNE A;  2GAF D;  2ND1 A;  4R5L A;  7HSC A;  1E2U A;  1SU8 A;  1GNT A;  4I43 A;  2YIV X;  4D8J A;  3KAW A;  3O3N B;  4F00 A;  4ILG A;  1DG4 A;  4F01 A;  4PO2 A;  1OAO A;  3ZED A;  1DKY A;  4IW0 A;  3OHX M;  5TKY A;  3KDR A;  4H6H A;  3LMF A;  3GI7 A;  1GNL A;  1GN9 A;  3T4A G;  3D2F A;  4UDX X;  3T49 A;  4EZN A;  4EZQ A;  3SBS A;  4EZP A;  2NCZ A;  3QNJ A;  3VEA A;  4E81 A;  1BPR A;  1DKX A;  1SUF A;  4JLC A;  2BPR A;  4WV5 A;  3KAV A;  1Q5L A;  4MQD A;  4M0M A;  3SBT B;  4EZT A;  5E84 A;  5FIG A;  4IM2 A;  1UPX A;  3FD9 A;  3T46 A;  3ER8 C;  4IWO A;  4JNF A;  2LM0 A;  3RV1 A;  4R5I A;  3DPP A;  2GA9 D;  4IWQ A;  1CKR A;  4HR1 B;  4FL9 A;  2KHO A;  4JL9 A;  3DPQ A;  4EZZ A;  4JN4 A;  4HY9 A;  1E9V A;  3I01 A;  4HYB A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...