4EZYA

Crystal structure of the substrate binding domain of e.coli dnak in complex with the designer peptide nrliltg
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
219
structure length
219
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK.
pubmed doi rcsb
molecule tags Chaperone
source organism Escherichia coli
molecule keywords Chaperone protein DnaK
total genus 71
structure length 219
sequence length 219
ec nomenclature
pdb deposition date 2012-05-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4ezyA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4ezyA01
3DPPA 4JNFA 4R5JA 4EZRA 4R5IA 4E81A 4EZNA 2KHOA 4JWEA 1DKYA 3DPQA 5E84A 4EZOA 5TKYA 2BPRA 4F00A 3T47A 4HYBA 4EZZA 4R5KA 3C7NA 1U00A 4B9QA 4EZQA 4EZTA 4R5GA 4JN4A 1YUWA 3DQGA 1DG4A 3T49A 3T46A 4F01A 4JWIA 4EZVA 4EZPA 2V7YA 3C7NB 4JNEA 3D2FA 4JWCA 2WINM 4JWDA 4EZWA 3T4AG 1DKXA 4H6HA 1CKRA 7HSCA 3D2EA 3H0XA 4EZUA 4WV7A 4EZSA 2OP6A 3DOBA 3N8EA 1Q5LA 4PO2A 2QFFA 1BPRA 4WV5A 3OHXM 3QNJA 4HY9A 1DKZA 3L3OM 4H6IA 3T48A 2QXLA 4FL9A 4R5LA 4EZYA 3DPOA 4EZXA
chains in the Genus database with same CATH superfamily
2EFLA 3CV5A 3BVWA 2BPRA 2F7QA 3DX2A 3VEBA 4JN4A 4ILIA 4JWDA 1UPXA 3L3PA 4H6HA 4FM3A 2MI7A 2Q13A 1ZYLA 1HXKA 3DX4A 2RAIA 3DX1A 5KBPA 1YUWA 4BNEA 3BUBA 3BVVA 2OZNB 2WINM 1TQTA 4M0MA 2WYIA 3DDGA 4AZ7A 3A98A 3O3NB 2QFFA 2X5CA 2N3KA 3T48A 3ABHA 3D4YA 1BPRA 3DPPA 3GI7A 4AZ6A 3D52A 4EZNA 2KHOA 4IM2A 1WDZA 4F00A 2EX3B 2GF4A 1U00A 3KDRA 1TQSA 2F7PA 1SU8A 4JWCA 2EWFA 1E2UA 1CKRA 3EJUA 2Z0OA 1Q5LA 1E9VA 4H6IA 2Z0NA 4FL9A 4E81A 1DKYA 3Q0KA 3UITA 3ZEFA 4EZQA 1R33A 4AZCA 3T4AG 7HSCA 1O7DB 2GA9D 3DOBA 4KIKA 3LMFA 3I01A 2QXLA 4EZRA 3CZSA 2ND1A 1QWUA 2YL6A 1TQWA 3RV1A 3QNIA 4JLCA 3QA8A 1R34A 3T46A 3LLLA 3QE6A 1URUA 3RV0A 5C5BA 2OO2A 4WV5A 3QNJA 3T49A 4JNEA 3KAVA 4R5IA 2YLLA 2ALWA 2YIBA 4UDXX 3EJQA 4HYBA 2ND0A 4ATMA 3BUDA 1MJGA 3DQGA 4MQDA 3D2FA 3EJRA 1X03A 2X3WA 2O0I1 4IM3A 1HTYA 3OK8A 3BUPA 4UDYX 3EJSA 1QWNA 4EZXA 4R5JA 4KIKB 3RPMA 3DX0A 2OBMA 3D50A 2FICA 2YL5A 3BLBA 4WPEA 1SU6A 3PLTA 4G6QA 3BUQA 3B51X 4NPHA 3Q84A 3DPOA 1LQ7A 2F1BA 4JWEA 4IWQA 2D4CA 2YI9A 2Q12A 2D1LA 3G9GA 2V0OA 2F1AA 4DCNC 2QKWA 3HAHA 1W9MA 4I43A 4AZHA 1E1DA 3B53X 4HY9A 3BVTA 2OW6A 3ER9B 3I04A 4JNFA 3DDFA 4EZOA 1I4LA 4R5KA 3C7NA 3HAIA 2YI8A 3SBTB 3VKHA 2FYVA 4FZPA 1DKXA 2EFKA 1OA0A 3VEAA 3F7WA 4ILGA 3D4ZA 3DPQA 3T47A 4AVMA 4EZTA 4R5GA 4FZOA 4F01A 4JWIA 2LXYA 5FIGA 2F18A 1SUFA 3BVXA 3EJTA 3H0XA 3HAJA 2OP6A 1GNTA 1I49A 3ERCC 3L3OM 3OWGA 1DG4A 1YWMA 2YL9A 3C7NB 2LM0A 3KAWA 3BUIA 4IWOA 2F7OA 4AZCB 4EZUA 4IWPA 3I2WA 2NCZA 4HR1A 4I1QA 1HWWA 4EZZA 2X3VA 4EZSA 5TKYA 2JNKA 3CKDA 4AKVA 4JL9A 2C08A 3ACOA 1GNLA 4DYLA 1SU7A 4ILHB 2OBLA 2Z8YA 4NQIA 2WYHA 4AZBA 1I4DA 2ZXQA 1TQVA 3OHXM 5C5BB 4EZYA 2RAJA 4E3CA 1R5EA 3ER8C 3SOGA 2RAKA 1QX1A 3D2EA 3SYVA 4H8SA 2YKTA 1PS3A 2RT6A 3CZNA 4FZSA 4R5LA 4HR1B 3B52X 3O3OB 3D51A 1GN9A 4EZVA 4EZPA 2V7YA 4D8JA 1OAOA 2PY6A 4EZWA 2OW7A 3DX3A 1Y2OA 3QWEA 1TQUA 4AZIA 2F7RA 2PMRA 2ELBA 3LVTA 3N8EA 1DKZA 2Z0VA 1ZWWA 3ZEDA 3CAZA 3CVRA 5E84A 4IW0A 2YIAA 2JNSA 3I39X 3SBSA 1X04A 4AZGA 3M3WA 4WV7A 2GAFD 1OA1A 1O7DC 4AZ5A 3BVUA 1I4TA 3FD9A 2YL8A 5FLEX 1JQKA 2X3XA 4B9QA 3O3MB 4IM0A 4WPCA 4NSWA 3EJPA 3DYTA 2YIVX 4PO2A 2YLAA
chains in the Genus database with same CATH topology
3I04A 4JNFA 4EZRA 2ND1A 4EZOA 2BPRA 4R5KA 3C7NA 3RV1A 3VEBA 4JLCA 2YI8A 3SBTB 3QA8A 4JN4A 3T46A 3VKHA 4E3CA 4ILIA 3RV0A 3ER8C 4JWDA 1UPXA 1DKXA 4H6HA 4FM3A 3D2EA 1OA0A 3VEAA 3F7WA 4ILGA 4WV5A 3QNJA 1ZYLA 2RT6A 4R5LA 3T49A 4JNEA 3KAVA 4R5IA 2YIBA 3DPQA 4UDXX 4HR1B 3B52X 3T47A 4HYBA 2ND0A 1MJGA 3O3OB 4EZTA 4R5GA 1YUWA 3DQGA 1GN9A 4F01A 4JWIA 4EZVA 4EZPA 2V7YA 4MQDA 4D8JA 3D2FA 2WINM 1OAOA 2PY6A 4M0MA 5FIGA 4EZWA 4IM3A 1SUFA 3H0XA 2OP6A 1GNTA 3A98A 3N8EA 3O3NB 2QFFA 2X5CA 2N3KA 3ERCC 3T48A 1DKZA 3L3OM 4UDYX 1BPRA 3ZEDA 4EZXA 3DPPA 3GI7A 4R5JA 3OWGA 4KIKB 2KHOA 4IM2A 5E84A 4EZNA 4F00A 2EX3B 2OBMA 1U00A 4IW0A 2YIAA 3KDRA 2JNSA 1DG4A 3I39X 1SU8A 3C7NB 2LM0A 3KAWA 4JWCA 3SBSA 2EWFA 1E2UA 1SU6A 4IWOA 1CKRA 4G6QA 4WV7A 4EZUA 2GAFD 1OA1A 1Q5LA 4IWPA 1E9VA 3B51X 2NCZA 4H6IA 4HR1A 4NPHA 4FL9A 3DPOA 4EZZA 4EZSA 3FD9A 4E81A 4JWEA 1DKYA 5TKYA 4IWQA 2YI9A 3UITA 5FLEX 4JL9A 3ZEFA 1JQKA 1GNLA 4B9QA 4EZQA 3O3MB 4IM0A 1SU7A 4ILHB 2OBLA 2Z8YA 3T4AG 7HSCA 1W9MA 4I43A 2YIVX 2GA9D 3DOBA 1E1DA 3B53X 3LMFA 4KIKA 3I01A 4PO2A 3OHXM 4HY9A 2QXLA 3ER9B 4EZYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DPP A;  4JNF A;  4R5J A;  4EZR A;  4R5I A;  4E81 A;  4EZN A;  2KHO A;  4JWE A;  1DKY A;  3DPQ A;  5E84 A;  4EZO A;  5TKY A;  2BPR A;  4F00 A;  3T47 A;  4HYB A;  4EZZ A;  4R5K A;  3C7N A;  1U00 A;  4B9Q A;  4EZQ A;  4EZT A;  4R5G A;  4JN4 A;  1YUW A;  3DQG A;  1DG4 A;  3T49 A;  3T46 A;  4F01 A;  4JWI A;  4EZV A;  4EZP A;  2V7Y A;  3C7N B;  4JNE A;  3D2F A;  4JWC A;  2WIN M;  4JWD A;  4EZW A;  3T4A G;  1DKX A;  4H6H A;  1CKR A;  7HSC A;  3D2E A;  3H0X A;  4EZU A;  4WV7 A;  4EZS A;  2OP6 A;  3DOB A;  3N8E A;  1Q5L A;  4PO2 A;  2QFF A;  1BPR A;  4WV5 A;  3OHX M;  3QNJ A;  4HY9 A;  1DKZ A;  3L3O M;  4H6I A;  3T48 A;  2QXL A;  4FL9 A;  4R5L A;  4EZY A;  3DPO A;  4EZX A; 
#chains in the Genus database with same CATH topology
 2EFL A;  3CV5 A;  3BVW A;  2BPR A;  2F7Q A;  3DX2 A;  3VEB A;  4JN4 A;  4ILI A;  4JWD A;  1UPX A;  3L3P A;  4H6H A;  4FM3 A;  2MI7 A;  2Q13 A;  1ZYL A;  1HXK A;  3DX4 A;  2RAI A;  3DX1 A;  5KBP A;  1YUW A;  4BNE A;  3BUB A;  3BVV A;  2OZN B;  2WIN M;  1TQT A;  4M0M A;  2WYI A;  3DDG A;  4AZ7 A;  3A98 A;  3O3N B;  2QFF A;  2X5C A;  2N3K A;  3T48 A;  3ABH A;  3D4Y A;  1BPR A;  3DPP A;  3GI7 A;  4AZ6 A;  3D52 A;  4EZN A;  2KHO A;  4IM2 A;  1WDZ A;  4F00 A;  2EX3 B;  2GF4 A;  1U00 A;  3KDR A;  1TQS A;  2F7P A;  1SU8 A;  4JWC A;  2EWF A;  1E2U A;  1CKR A;  3EJU A;  2Z0O A;  1Q5L A;  1E9V A;  4H6I A;  2Z0N A;  4FL9 A;  4E81 A;  1DKY A;  3Q0K A;  3UIT A;  3ZEF A;  4EZQ A;  1R33 A;  4AZC A;  3T4A G;  7HSC A;  1O7D B;  2GA9 D;  3DOB A;  4KIK A;  3LMF A;  3I01 A;  2QXL A;  4EZR A;  3CZS A;  2ND1 A;  1QWU A;  2YL6 A;  1TQW A;  3RV1 A;  3QNI A;  4JLC A;  3QA8 A;  1R34 A;  3T46 A;  3LLL A;  3QE6 A;  1URU A;  3RV0 A;  5C5B A;  2OO2 A;  4WV5 A;  3QNJ A;  3T49 A;  4JNE A;  3KAV A;  4R5I A;  2YLL A;  2ALW A;  2YIB A;  4UDX X;  3EJQ A;  4HYB A;  2ND0 A;  4ATM A;  3BUD A;  1MJG A;  3DQG A;  4MQD A;  3D2F A;  3EJR A;  1X03 A;  2X3W A;  2O0I 1;  4IM3 A;  1HTY A;  3OK8 A;  3BUP A;  4UDY X;  3EJS A;  1QWN A;  4EZX A;  4R5J A;  4KIK B;  3RPM A;  3DX0 A;  2OBM A;  3D50 A;  2FIC A;  2YL5 A;  3BLB A;  4WPE A;  1SU6 A;  3PLT A;  4G6Q A;  3BUQ A;  3B51 X;  4NPH A;  3Q84 A;  3DPO A;  1LQ7 A;  2F1B A;  4JWE A;  4IWQ A;  2D4C A;  2YI9 A;  2Q12 A;  2D1L A;  3G9G A;  2V0O A;  2F1A A;  4DCN C;  2QKW A;  3HAH A;  1W9M A;  4I43 A;  4AZH A;  1E1D A;  3B53 X;  4HY9 A;  3BVT A;  2OW6 A;  3ER9 B;  3I04 A;  4JNF A;  3DDF A;  4EZO A;  1I4L A;  4R5K A;  3C7N A;  3HAI A;  2YI8 A;  3SBT B;  3VKH A;  2FYV A;  4FZP A;  1DKX A;  2EFK A;  1OA0 A;  3VEA A;  3F7W A;  4ILG A;  3D4Z A;  3DPQ A;  3T47 A;  4AVM A;  4EZT A;  4R5G A;  4FZO A;  4F01 A;  4JWI A;  2LXY A;  5FIG A;  2F18 A;  1SUF A;  3BVX A;  3EJT A;  3H0X A;  3HAJ A;  2OP6 A;  1GNT A;  1I49 A;  3ERC C;  3L3O M;  3OWG A;  1DG4 A;  1YWM A;  2YL9 A;  3C7N B;  2LM0 A;  3KAW A;  3BUI A;  4IWO A;  2F7O A;  4AZC B;  4EZU A;  4IWP A;  3I2W A;  2NCZ A;  4HR1 A;  4I1Q A;  1HWW A;  4EZZ A;  2X3V A;  4EZS A;  5TKY A;  2JNK A;  3CKD A;  4AKV A;  4JL9 A;  2C08 A;  3ACO A;  1GNL A;  4DYL A;  1SU7 A;  4ILH B;  2OBL A;  2Z8Y A;  4NQI A;  2WYH A;  4AZB A;  1I4D A;  2ZXQ A;  1TQV A;  3OHX M;  5C5B B;  4EZY A;  2RAJ A;  4E3C A;  1R5E A;  3ER8 C;  3SOG A;  2RAK A;  1QX1 A;  3D2E A;  3SYV A;  4H8S A;  2YKT A;  1PS3 A;  2RT6 A;  3CZN A;  4FZS A;  4R5L A;  4HR1 B;  3B52 X;  3O3O B;  3D51 A;  1GN9 A;  4EZV A;  4EZP A;  2V7Y A;  4D8J A;  1OAO A;  2PY6 A;  4EZW A;  2OW7 A;  3DX3 A;  1Y2O A;  3QWE A;  1TQU A;  4AZI A;  2F7R A;  2PMR A;  2ELB A;  3LVT A;  3N8E A;  1DKZ A;  2Z0V A;  1ZWW A;  3ZED A;  3CAZ A;  3CVR A;  5E84 A;  4IW0 A;  2YIA A;  2JNS A;  3I39 X;  3SBS A;  1X04 A;  4AZG A;  3M3W A;  4WV7 A;  2GAF D;  1OA1 A;  1O7D C;  4AZ5 A;  3BVU A;  1I4T A;  3FD9 A;  2YL8 A;  5FLE X;  1JQK A;  2X3X A;  4B9Q A;  3O3M B;  4IM0 A;  4WPC A;  4NSW A;  3EJP A;  3DYT A;  2YIV X;  4PO2 A;  2YLA A; 
#chains in the Genus database with same CATH homology
 3I04 A;  4JNF A;  4EZR A;  2ND1 A;  4EZO A;  2BPR A;  4R5K A;  3C7N A;  3RV1 A;  3VEB A;  4JLC A;  2YI8 A;  3SBT B;  3QA8 A;  4JN4 A;  3T46 A;  3VKH A;  4E3C A;  4ILI A;  3RV0 A;  3ER8 C;  4JWD A;  1UPX A;  1DKX A;  4H6H A;  4FM3 A;  3D2E A;  1OA0 A;  3VEA A;  3F7W A;  4ILG A;  4WV5 A;  3QNJ A;  1ZYL A;  2RT6 A;  4R5L A;  3T49 A;  4JNE A;  3KAV A;  4R5I A;  2YIB A;  3DPQ A;  4UDX X;  4HR1 B;  3B52 X;  3T47 A;  4HYB A;  2ND0 A;  1MJG A;  3O3O B;  4EZT A;  4R5G A;  1YUW A;  3DQG A;  1GN9 A;  4F01 A;  4JWI A;  4EZV A;  4EZP A;  2V7Y A;  4MQD A;  4D8J A;  3D2F A;  2WIN M;  1OAO A;  2PY6 A;  4M0M A;  5FIG A;  4EZW A;  4IM3 A;  1SUF A;  3H0X A;  2OP6 A;  1GNT A;  3A98 A;  3N8E A;  3O3N B;  2QFF A;  2X5C A;  2N3K A;  3ERC C;  3T48 A;  1DKZ A;  3L3O M;  4UDY X;  1BPR A;  3ZED A;  4EZX A;  3DPP A;  3GI7 A;  4R5J A;  3OWG A;  4KIK B;  2KHO A;  4IM2 A;  5E84 A;  4EZN A;  4F00 A;  2EX3 B;  2OBM A;  1U00 A;  4IW0 A;  2YIA A;  3KDR A;  2JNS A;  1DG4 A;  3I39 X;  1SU8 A;  3C7N B;  2LM0 A;  3KAW A;  4JWC A;  3SBS A;  2EWF A;  1E2U A;  1SU6 A;  4IWO A;  1CKR A;  4G6Q A;  4WV7 A;  4EZU A;  2GAF D;  1OA1 A;  1Q5L A;  4IWP A;  1E9V A;  3B51 X;  2NCZ A;  4H6I A;  4HR1 A;  4NPH A;  4FL9 A;  3DPO A;  4EZZ A;  4EZS A;  3FD9 A;  4E81 A;  4JWE A;  1DKY A;  5TKY A;  4IWQ A;  2YI9 A;  3UIT A;  5FLE X;  4JL9 A;  3ZEF A;  1JQK A;  1GNL A;  4B9Q A;  4EZQ A;  3O3M B;  4IM0 A;  1SU7 A;  4ILH B;  2OBL A;  2Z8Y A;  3T4A G;  7HSC A;  1W9M A;  4I43 A;  2YIV X;  2GA9 D;  3DOB A;  1E1D A;  3B53 X;  3LMF A;  4KIK A;  3I01 A;  4PO2 A;  3OHX M;  4HY9 A;  2QXL A;  3ER9 B;  4EZY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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