4R5JA

Crystal structure of the dnak c-terminus (dnak-sbd-a)
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
222
structure length
218
Chain Sequence
HHHIEVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKANEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone
molecule keywords Chaperone protein DnaK
publication title Structural Basis for the Inhibition of HSP70 and DnaK Chaperones by Small-Molecule Targeting of a C-Terminal Allosteric Pocket.
pubmed doi rcsb
source organism Escherichia coli
total genus 62
structure length 218
sequence length 222
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-08-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4r5jA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4r5jA01
2QFFA 3DPOA 4R5LA 4H6HA 3D2FA 4EZNA 4EZRA 7HSCA 1DG4A 3T48A 4H6IA 4JNEA 3D2EA 5TKYA 3L3OM 4EZOA 4JWCA 4PO2A 4JWDA 4EZWA 4HYBA 4EZUA 2V7YA 3H0XA 4E81A 5E84A 3DOBA 1DKZA 4R5IA 4WV5A 4JWEA 4R5JA 4EZVA 2QXLA 4B9QA 4EZTA 4EZZA 4EZSA 3DQGA 4JNFA 1YUWA 3T46A 4R5KA 3OHXM 4F01A 3C7NA 4EZXA 1Q5LA 3N8EA 2OP6A 1U00A 3T47A 2KHOA 4WV7A 4EZQA 3DPPA 3T4AG 4EZPA 4F00A 4EZYA 4HY9A 1BPRA 3QNJA 4R5GA 2BPRA 4JN4A 4FL9A 1CKRA 2WINM 3C7NB 3DPQA 1DKXA 1DKYA 3T49A 4JWIA
chains in the Genus database with same CATH superfamily
3DX2A 7HSCA 4AVMA 2GF4A 3T48A 5C5BB 2YL8A 4HR1A 4M0MA 4AZ7A 2YL6A 3BLBA 4BNEA 4IM3A 2OBLA 2OW7A 4WPEA 1QWNA 4FL9A 1TQWA 1ZWWA 3CZSA 4R5LA 1OAOA 2D1LA 2PMRA 4PO2A 4EZOA 3I39X 4JLCA 4HYBA 3A98A 2F1BA 1DKZA 3ABHA 4FZOA 1SU8A 3EJSA 2Z8YA 1DG4A 3KDRA 5C5BA 1URUA 4EZNA 3I04A 3M3WA 1OA1A 3DX1A 2OZNB 3BVWA 4NSWA 4F00A 1BPRA 3LLLA 2YL5A 3BUDA 1GN9A 1HTYA 3UITA 3B52X 3D2FA 2D4CA 3O3NB 3L3OM 4JWDA 3SYVA 1O7DB 1R34A 3PLTA 2YI9A 3CAZA 3DQGA 3F7WA 3CV5A 1Q5LA 1I4DA 3T4AG 2V0OA 2RT6A 4FM3A 4IWQA 3EJTA 3FD9A 2YIBA 4EZWA 1GNLA 4E81A 4IWPA 4EZTA 4EZSA 3DDFA 3OHXM 4IW0A 2OP6A 3B51X 4EZQA 3G9GA 4AZBA 3DPQA 2YKTA 1WDZA 1X03A 2YL9A 3LVTA 3SBTB 3D51A 2FYVA 1X04A 2QKWA 2QXLA 1R5EA 2F1AA 3D4YA 1E2UA 4FZPA 1HXKA 3QNJA 1I4LA 1DKXA 2WYHA 3HAIA 3ER9B 3CKDA 5TKYA 3SBSA 1Y2OA 5E84A 3BUPA 4EZZA 3T46A 4EZXA 2F7OA 4H8SA 4AZHA 3CVRA 4EZPA 2EFLA 2YLLA 3D4ZA 3QWEA 2C08A 2N3KA 1I49A 3I2WA 1O7DC 3I01A 2X3VA 3LMFA 3BVUA 3DOBA 2F18A 1YUWA 3Q84A 1ZYLA 4IWOA 1TQUA 1MJGA 3T47A 3DX3A 5KBPA 4WV7A 3KAWA 4KIKB 4ATMA 1CKRA 3ERCC 3CZNA 1DKYA 2ND0A 2F7PA 2X3XA 1E1DA 4H6HA 3RV0A 1SUFA 1YWMA 3ER8C 1UPXA 1JQKA 1R33A 2Q13A 4ILHB 2RAKA 4AZCB 1PS3A 1HWWA 4JWEA 3C7NA 2NCZA 1TQSA 2KHOA 2OW6A 4AZGA 2LM0A 3D50A 4NQIA 2QFFA 1E9VA 4JNEA 4AZIA 3BVVA 2OO2A 3ACOA 4KIKA 4IM2A 2EX3B 1U00A 2Q12A 3HAHA 3L3PA 4JN4A 3D52A 2JNSA 3T49A 3DDGA 4AZCA 2FICA 4ILGA 4MQDA 2ELBA 2F7QA 3H0XA 5FLEX 3QE6A 4UDYX 1QX1A 2ND1A 3DX0A 2RAIA 2ZXQA 2YIAA 3N8EA 4HY9A 2WINM 1LQ7A 1I4TA 3VEAA 4DYLA 2GA9D 3D2EA 2YIVX 2Z0VA 3QNIA 4R5IA 3GI7A 2OBMA 2F7RA 1SU6A 2MI7A 4F01A 3ZEFA 1W9MA 3BUBA 4JL9A 3O3OB 3EJRA 3DPPA 3KAVA 3C7NB 4AZ5A 3EJPA 4IM0A 3DPOA 2YLAA 4H6IA 2EFKA 3EJQA 2V7YA 3BVTA 4ILIA 3B53X 4R5JA 2PY6A 4JNFA 3ZEDA 1SU7A 3RV1A 4UDXX 4R5GA 4FZSA 3HAJA 4EZRA 3OK8A 2ALWA 4D8JA 2YI8A 5FIGA 3Q0KA 3BUQA 4EZUA 4E3CA 4EZVA 2LXYA 4WPCA 2GAFD 2WYIA 4EZYA 4AKVA 1GNTA 3BUIA 4JWIA 2JNKA 3BVXA 4JWCA 3DX4A 2RAJA 4B9QA 2EWFA 2X5CA 3RPMA 4HR1B 4G6QA 2BPRA 3VKHA 3VEBA 3SOGA 2Z0OA 2X3WA 4AZ6A 2O0I1 3EJUA 4I1QA 1TQVA 4DCNC 4NPHA 3QA8A 3DYTA 4WV5A 1TQTA 1QWUA 4R5KA 1OA0A 2Z0NA 4I43A 3O3MB 3OWGA
chains in the Genus database with same CATH topology
1E1DA 3DPOA 4H6HA 3RV0A 7HSCA 1SUFA 3T48A 3ER8C 3FD9A 1UPXA 4H6IA 1JQKA 2YIBA 4ILHB 4EZWA 1GNLA 2V7YA 4E81A 4ILIA 4HR1A 4JWEA 3B53X 4R5JA 4IWPA 2PY6A 4EZTA 4EZSA 4JNFA 4M0MA 3ZEDA 3OHXM 1SU7A 4IM3A 3C7NA 4IW0A 2OBLA 2OP6A 2NCZA 3B51X 3RV1A 2KHOA 4UDXX 4EZQA 2LM0A 4R5GA 4FL9A 3DPQA 2QFFA 1E9VA 4EZRA 4R5LA 1OAOA 3SBTB 4D8JA 2YI8A 5FIGA 4PO2A 4JNEA 4EZOA 3I39X 4JLCA 4HYBA 4EZUA 4E3CA 3A98A 1DKZA 4EZVA 2QXLA 4IWQA 4KIKA 4IM2A 1SU8A 2EX3B 1U00A 1E2UA 2GAFD 2Z8YA 1DG4A 4EZYA 3QNJA 4JN4A 3KDRA 1GNTA 1DKXA 2JNSA 3T49A 4JWIA 4EZNA 3I04A 3ER9B 4ILGA 4MQDA 5TKYA 3SBSA 4JWCA 1OA1A 3H0XA 5E84A 5FLEX 4UDYX 2ND1A 2EWFA 4B9QA 4EZZA 2X5CA 3T46A 2YIAA 4HR1B 4EZXA 3N8EA 4G6QA 4EZPA 4F00A 1BPRA 2BPRA 4HY9A 3VKHA 2WINM 3VEBA 1GN9A 2N3KA 3UITA 3B52X 3D2FA 3VEAA 2GA9D 3D2EA 3I01A 2YIVX 3L3OM 3O3NB 4JWDA 3LMFA 4NPHA 3DOBA 2YI9A 4R5IA 3QA8A 3GI7A 4WV5A 2OBMA 3DQGA 3F7WA 1YUWA 4R5KA 1ZYLA 1SU6A 4IWOA 4F01A 3ZEFA 1OA0A 1MJGA 1Q5LA 1W9MA 3T47A 4JL9A 3O3OB 4I43A 4WV7A 3KAWA 3DPPA 4KIKB 3T4AG 3KAVA 2RT6A 1CKRA 3O3MB 3ERCC 3C7NB 4FM3A 1DKYA 2ND0A 3OWGA 4IM0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QFF A;  3DPO A;  4R5L A;  4H6H A;  3D2F A;  4EZN A;  4EZR A;  7HSC A;  1DG4 A;  3T48 A;  4H6I A;  4JNE A;  3D2E A;  5TKY A;  3L3O M;  4EZO A;  4JWC A;  4PO2 A;  4JWD A;  4EZW A;  4HYB A;  4EZU A;  2V7Y A;  3H0X A;  4E81 A;  5E84 A;  3DOB A;  1DKZ A;  4R5I A;  4WV5 A;  4JWE A;  4R5J A;  4EZV A;  2QXL A;  4B9Q A;  4EZT A;  4EZZ A;  4EZS A;  3DQG A;  4JNF A;  1YUW A;  3T46 A;  4R5K A;  3OHX M;  4F01 A;  3C7N A;  4EZX A;  1Q5L A;  3N8E A;  2OP6 A;  1U00 A;  3T47 A;  2KHO A;  4WV7 A;  4EZQ A;  3DPP A;  3T4A G;  4EZP A;  4F00 A;  4EZY A;  4HY9 A;  1BPR A;  3QNJ A;  4R5G A;  2BPR A;  4JN4 A;  4FL9 A;  1CKR A;  2WIN M;  3C7N B;  3DPQ A;  1DKX A;  1DKY A;  3T49 A;  4JWI A; 
#chains in the Genus database with same CATH topology
 3DX2 A;  7HSC A;  4AVM A;  2GF4 A;  3T48 A;  5C5B B;  2YL8 A;  4HR1 A;  4M0M A;  4AZ7 A;  2YL6 A;  3BLB A;  4BNE A;  4IM3 A;  2OBL A;  2OW7 A;  4WPE A;  1QWN A;  4FL9 A;  1TQW A;  1ZWW A;  3CZS A;  4R5L A;  1OAO A;  2D1L A;  2PMR A;  4PO2 A;  4EZO A;  3I39 X;  4JLC A;  4HYB A;  3A98 A;  2F1B A;  1DKZ A;  3ABH A;  4FZO A;  1SU8 A;  3EJS A;  2Z8Y A;  1DG4 A;  3KDR A;  5C5B A;  1URU A;  4EZN A;  3I04 A;  3M3W A;  1OA1 A;  3DX1 A;  2OZN B;  3BVW A;  4NSW A;  4F00 A;  1BPR A;  3LLL A;  2YL5 A;  3BUD A;  1GN9 A;  1HTY A;  3UIT A;  3B52 X;  3D2F A;  2D4C A;  3O3N B;  3L3O M;  4JWD A;  3SYV A;  1O7D B;  1R34 A;  3PLT A;  2YI9 A;  3CAZ A;  3DQG A;  3F7W A;  3CV5 A;  1Q5L A;  1I4D A;  3T4A G;  2V0O A;  2RT6 A;  4FM3 A;  4IWQ A;  3EJT A;  3FD9 A;  2YIB A;  4EZW A;  1GNL A;  4E81 A;  4IWP A;  4EZT A;  4EZS A;  3DDF A;  3OHX M;  4IW0 A;  2OP6 A;  3B51 X;  4EZQ A;  3G9G A;  4AZB A;  3DPQ A;  2YKT A;  1WDZ A;  1X03 A;  2YL9 A;  3LVT A;  3SBT B;  3D51 A;  2FYV A;  1X04 A;  2QKW A;  2QXL A;  1R5E A;  2F1A A;  3D4Y A;  1E2U A;  4FZP A;  1HXK A;  3QNJ A;  1I4L A;  1DKX A;  2WYH A;  3HAI A;  3ER9 B;  3CKD A;  5TKY A;  3SBS A;  1Y2O A;  5E84 A;  3BUP A;  4EZZ A;  3T46 A;  4EZX A;  2F7O A;  4H8S A;  4AZH A;  3CVR A;  4EZP A;  2EFL A;  2YLL A;  3D4Z A;  3QWE A;  2C08 A;  2N3K A;  1I49 A;  3I2W A;  1O7D C;  3I01 A;  2X3V A;  3LMF A;  3BVU A;  3DOB A;  2F18 A;  1YUW A;  3Q84 A;  1ZYL A;  4IWO A;  1TQU A;  1MJG A;  3T47 A;  3DX3 A;  5KBP A;  4WV7 A;  3KAW A;  4KIK B;  4ATM A;  1CKR A;  3ERC C;  3CZN A;  1DKY A;  2ND0 A;  2F7P A;  2X3X A;  1E1D A;  4H6H A;  3RV0 A;  1SUF A;  1YWM A;  3ER8 C;  1UPX A;  1JQK A;  1R33 A;  2Q13 A;  4ILH B;  2RAK A;  4AZC B;  1PS3 A;  1HWW A;  4JWE A;  3C7N A;  2NCZ A;  1TQS A;  2KHO A;  2OW6 A;  4AZG A;  2LM0 A;  3D50 A;  4NQI A;  2QFF A;  1E9V A;  4JNE A;  4AZI A;  3BVV A;  2OO2 A;  3ACO A;  4KIK A;  4IM2 A;  2EX3 B;  1U00 A;  2Q12 A;  3HAH A;  3L3P A;  4JN4 A;  3D52 A;  2JNS A;  3T49 A;  3DDG A;  4AZC A;  2FIC A;  4ILG A;  4MQD A;  2ELB A;  2F7Q A;  3H0X A;  5FLE X;  3QE6 A;  4UDY X;  1QX1 A;  2ND1 A;  3DX0 A;  2RAI A;  2ZXQ A;  2YIA A;  3N8E A;  4HY9 A;  2WIN M;  1LQ7 A;  1I4T A;  3VEA A;  4DYL A;  2GA9 D;  3D2E A;  2YIV X;  2Z0V A;  3QNI A;  4R5I A;  3GI7 A;  2OBM A;  2F7R A;  1SU6 A;  2MI7 A;  4F01 A;  3ZEF A;  1W9M A;  3BUB A;  4JL9 A;  3O3O B;  3EJR A;  3DPP A;  3KAV A;  3C7N B;  4AZ5 A;  3EJP A;  4IM0 A;  3DPO A;  2YLA A;  4H6I A;  2EFK A;  3EJQ A;  2V7Y A;  3BVT A;  4ILI A;  3B53 X;  4R5J A;  2PY6 A;  4JNF A;  3ZED A;  1SU7 A;  3RV1 A;  4UDX X;  4R5G A;  4FZS A;  3HAJ A;  4EZR A;  3OK8 A;  2ALW A;  4D8J A;  2YI8 A;  5FIG A;  3Q0K A;  3BUQ A;  4EZU A;  4E3C A;  4EZV A;  2LXY A;  4WPC A;  2GAF D;  2WYI A;  4EZY A;  4AKV A;  1GNT A;  3BUI A;  4JWI A;  2JNK A;  3BVX A;  4JWC A;  3DX4 A;  2RAJ A;  4B9Q A;  2EWF A;  2X5C A;  3RPM A;  4HR1 B;  4G6Q A;  2BPR A;  3VKH A;  3VEB A;  3SOG A;  2Z0O A;  2X3W A;  4AZ6 A;  2O0I 1;  3EJU A;  4I1Q A;  1TQV A;  4DCN C;  4NPH A;  3QA8 A;  3DYT A;  4WV5 A;  1TQT A;  1QWU A;  4R5K A;  1OA0 A;  2Z0N A;  4I43 A;  3O3M B;  3OWG A; 
#chains in the Genus database with same CATH homology
 1E1D A;  3DPO A;  4H6H A;  3RV0 A;  7HSC A;  1SUF A;  3T48 A;  3ER8 C;  3FD9 A;  1UPX A;  4H6I A;  1JQK A;  2YIB A;  4ILH B;  4EZW A;  1GNL A;  2V7Y A;  4E81 A;  4ILI A;  4HR1 A;  4JWE A;  3B53 X;  4R5J A;  4IWP A;  2PY6 A;  4EZT A;  4EZS A;  4JNF A;  4M0M A;  3ZED A;  3OHX M;  1SU7 A;  4IM3 A;  3C7N A;  4IW0 A;  2OBL A;  2OP6 A;  2NCZ A;  3B51 X;  3RV1 A;  2KHO A;  4UDX X;  4EZQ A;  2LM0 A;  4R5G A;  4FL9 A;  3DPQ A;  2QFF A;  1E9V A;  4EZR A;  4R5L A;  1OAO A;  3SBT B;  4D8J A;  2YI8 A;  5FIG A;  4PO2 A;  4JNE A;  4EZO A;  3I39 X;  4JLC A;  4HYB A;  4EZU A;  4E3C A;  3A98 A;  1DKZ A;  4EZV A;  2QXL A;  4IWQ A;  4KIK A;  4IM2 A;  1SU8 A;  2EX3 B;  1U00 A;  1E2U A;  2GAF D;  2Z8Y A;  1DG4 A;  4EZY A;  3QNJ A;  4JN4 A;  3KDR A;  1GNT A;  1DKX A;  2JNS A;  3T49 A;  4JWI A;  4EZN A;  3I04 A;  3ER9 B;  4ILG A;  4MQD A;  5TKY A;  3SBS A;  4JWC A;  1OA1 A;  3H0X A;  5E84 A;  5FLE X;  4UDY X;  2ND1 A;  2EWF A;  4B9Q A;  4EZZ A;  2X5C A;  3T46 A;  2YIA A;  4HR1 B;  4EZX A;  3N8E A;  4G6Q A;  4EZP A;  4F00 A;  1BPR A;  2BPR A;  4HY9 A;  3VKH A;  2WIN M;  3VEB A;  1GN9 A;  2N3K A;  3UIT A;  3B52 X;  3D2F A;  3VEA A;  2GA9 D;  3D2E A;  3I01 A;  2YIV X;  3L3O M;  3O3N B;  4JWD A;  3LMF A;  4NPH A;  3DOB A;  2YI9 A;  4R5I A;  3QA8 A;  3GI7 A;  4WV5 A;  2OBM A;  3DQG A;  3F7W A;  1YUW A;  4R5K A;  1ZYL A;  1SU6 A;  4IWO A;  4F01 A;  3ZEF A;  1OA0 A;  1MJG A;  1Q5L A;  1W9M A;  3T47 A;  4JL9 A;  3O3O B;  4I43 A;  4WV7 A;  3KAW A;  3DPP A;  4KIK B;  3T4A G;  3KAV A;  2RT6 A;  1CKR A;  3O3M B;  3ERC C;  3C7N B;  4FM3 A;  1DKY A;  2ND0 A;  3OWG A;  4IM0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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