3DOBA

Peptide-binding domain of heat shock 70 kda protein f44e5.5 from c.elegans.
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
149
structure length
145
Chain Sequence
DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNETQSDIDRMVHEAKQFEKEDGEQRERVQARNQLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding
molecule keywords Heat shock 70 kDa protein F44E5.5
publication title X-ray crystal structure of Peptide-binding domain of Heat shock 70 kDa protein F44E5.5 from C.elegans.
rcsb
source organism Caenorhabditis elegans
total genus 37
structure length 145
sequence length 149
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-07-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 3dobA00
4JWEA 3C7NB 4JWIA 4R5GA 4EZWA 3D2EA 4EZTA 4HYBA 4F00A 4PO2A 7HSCA 2OP6A 4WV7A 4EZQA 4EZZA 5E84A 4EZYA 1Q5LA 4JNFA 4WV5A 4EZOA 3D2FA 3DPOA 5TKYA 4EZRA 4JN4A 4EZNA 4F01A 1DKZA 3C7NA 2BPRA 2QXLA 1DKYA 1BPRA 3DQGA 4JNEA 4EZPA 3QNJA 4R5LA 1DG4A 4B9QA 3DPPA 4EZXA 1CKRA 4R5IA 3DOBA 4R5KA 4EZSA 3DPQA 1U00A 2V7YA 3H0XA 4JWDA 2KHOA 4HY9A 4JWCA 4EZUA 3N8EA 4EZVA 1YUWA 1DKXA 4E81A 4R5JA 4FL9A
chains in the Genus database with same CATH superfamily
4I43A 4JWEA 3C7NB 4JWIA 4R5GA 4EZWA 3D2EA 4ILIA 4HYBA 4EZTA 4F00A 4PO2A 2OP6A 7HSCA 4WV7A 4EZQA 3ZEFA 4MQDA 4EZZA 5E84A 4ILGA 4EZYA 1Q5LA 4JNFA 4WV5A 3SBSA 4EZOA 3D2FA 3DPOA 5TKYA 4EZRA 4JN4A 4EZNA 4F01A 1DKZA 3C7NA 2BPRA 2QXLA 1DKYA 1BPRA 3DQGA 4JNEA 4EZPA 3QNJA 4R5LA 1DG4A 4B9QA 3DPPA 4EZXA 1CKRA 4R5IA 3DOBA 4R5KA 3SBTB 4EZSA 3DPQA 1U00A 2V7YA 3H0XA 4JWDA 2KHOA 4HY9A 4JWCA 4EZUA 3N8EA 4EZVA 1YUWA 1DKXA 4E81A 4R5JA 4FL9A 4ILHB
chains in the Genus database with same CATH topology
4I43A 4JWEA 3C7NB 4JWIA 4R5GA 4EZWA 3D2EA 4ILIA 4HYBA 4EZTA 4F00A 4PO2A 2OP6A 7HSCA 4WV7A 4EZQA 3ZEFA 4MQDA 4EZZA 5E84A 4ILGA 4EZYA 1Q5LA 4JNFA 4WV5A 3SBSA 4EZOA 3D2FA 3DPOA 5TKYA 4EZRA 4JN4A 4EZNA 4F01A 1DKZA 3C7NA 2BPRA 2QXLA 1DKYA 1BPRA 3DQGA 4JNEA 4EZPA 3QNJA 4R5LA 1DG4A 4B9QA 3DPPA 4EZXA 1CKRA 4R5IA 3DOBA 4R5KA 3SBTB 4EZSA 3DPQA 1U00A 2V7YA 3H0XA 4JWDA 2KHOA 4HY9A 4JWCA 4EZUA 3N8EA 4EZVA 1YUWA 1DKXA 4E81A 4R5JA 4FL9A 4ILHB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JWE A;  3C7N B;  4JWI A;  4R5G A;  4EZW A;  3D2E A;  4EZT A;  4HYB A;  4F00 A;  4PO2 A;  7HSC A;  2OP6 A;  4WV7 A;  4EZQ A;  4EZZ A;  5E84 A;  4EZY A;  1Q5L A;  4JNF A;  4WV5 A;  4EZO A;  3D2F A;  3DPO A;  5TKY A;  4EZR A;  4JN4 A;  4EZN A;  4F01 A;  1DKZ A;  3C7N A;  2BPR A;  2QXL A;  1DKY A;  1BPR A;  3DQG A;  4JNE A;  4EZP A;  3QNJ A;  4R5L A;  1DG4 A;  4B9Q A;  3DPP A;  4EZX A;  1CKR A;  4R5I A;  3DOB A;  4R5K A;  4EZS A;  3DPQ A;  1U00 A;  2V7Y A;  3H0X A;  4JWD A;  2KHO A;  4HY9 A;  4JWC A;  4EZU A;  3N8E A;  4EZV A;  1YUW A;  1DKX A;  4E81 A;  4R5J A;  4FL9 A; 
#chains in the Genus database with same CATH topology
 4I43 A;  4JWE A;  3C7N B;  4JWI A;  4R5G A;  4EZW A;  3D2E A;  4ILI A;  4HYB A;  4EZT A;  4F00 A;  4PO2 A;  2OP6 A;  7HSC A;  4WV7 A;  4EZQ A;  3ZEF A;  4MQD A;  4EZZ A;  5E84 A;  4ILG A;  4EZY A;  1Q5L A;  4JNF A;  4WV5 A;  3SBS A;  4EZO A;  3D2F A;  3DPO A;  5TKY A;  4EZR A;  4JN4 A;  4EZN A;  4F01 A;  1DKZ A;  3C7N A;  2BPR A;  2QXL A;  1DKY A;  1BPR A;  3DQG A;  4JNE A;  4EZP A;  3QNJ A;  4R5L A;  1DG4 A;  4B9Q A;  3DPP A;  4EZX A;  1CKR A;  4R5I A;  3DOB A;  4R5K A;  3SBT B;  4EZS A;  3DPQ A;  1U00 A;  2V7Y A;  3H0X A;  4JWD A;  2KHO A;  4HY9 A;  4JWC A;  4EZU A;  3N8E A;  4EZV A;  1YUW A;  1DKX A;  4E81 A;  4R5J A;  4FL9 A;  4ILH B; 
#chains in the Genus database with same CATH homology
 4I43 A;  4JWE A;  3C7N B;  4JWI A;  4R5G A;  4EZW A;  3D2E A;  4ILI A;  4HYB A;  4EZT A;  4F00 A;  4PO2 A;  2OP6 A;  7HSC A;  4WV7 A;  4EZQ A;  3ZEF A;  4MQD A;  4EZZ A;  5E84 A;  4ILG A;  4EZY A;  1Q5L A;  4JNF A;  4WV5 A;  3SBS A;  4EZO A;  3D2F A;  3DPO A;  5TKY A;  4EZR A;  4JN4 A;  4EZN A;  4F01 A;  1DKZ A;  3C7N A;  2BPR A;  2QXL A;  1DKY A;  1BPR A;  3DQG A;  4JNE A;  4EZP A;  3QNJ A;  4R5L A;  1DG4 A;  4B9Q A;  3DPP A;  4EZX A;  1CKR A;  4R5I A;  3DOB A;  4R5K A;  3SBT B;  4EZS A;  3DPQ A;  1U00 A;  2V7Y A;  3H0X A;  4JWD A;  2KHO A;  4HY9 A;  4JWC A;  4EZU A;  3N8E A;  4EZV A;  1YUW A;  1DKX A;  4E81 A;  4R5J A;  4FL9 A;  4ILH B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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