1DKZA

The substrate binding domain of dnak in complex with a substrate peptide, determined from type 1 native crystals
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
215
structure length
215
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Complex (molecular chaperone/peptide)
molecule keywords SUBSTRATE BINDING DOMAIN OF DNAK
publication title Structural analysis of substrate binding by the molecular chaperone DnaK.
pubmed rcsb
total genus 62
structure length 215
sequence length 215
ec nomenclature
pdb deposition date 1996-06-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 1dkzA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 1dkzA01
2KHOA 7HSCA 4JNEA 4JNFA 5E84A 4EZPA 4WV7A 1YUWA 4PO2A 4B9QA 2BPRA 1DKZA 4R5LA 4R5IA 4HYBA 4EZTA 3QNJA 4H6IA 3DPQA 4JWEA 4EZOA 4H6HA 4EZUA 3DOBA 4JWDA 3D2FA 4EZXA 3DQGA 2OP6A 4EZZA 2V7YA 1DG4A 3OHXM 3DPPA 3T48A 4F01A 4EZRA 4EZYA 4R5KA 4EZWA 1DKXA 4R5GA 5TKYA 4F00A 4EZSA 1BPRA 3T47A 4EZVA 4JWCA 2QXLA 3T4AG 3DPOA 3D2EA 1DKYA 2WINM 2QFFA 4EZQA 3H0XA 3N8EA 3C7NA 4WV5A 3L3OM 1CKRA 4HY9A 4JN4A 4JWIA 4EZNA 1Q5LA 4E81A 4R5JA 1U00A 3T46A 3T49A 3C7NB 4FL9A
chains in the Genus database with same CATH superfamily
4AZBA 3SOGA 2GA9D 2BPRA 2F7RA 4R5IA 2ALWA 4AZCA 3D50A 3DX1A 2WINM 4AZIA 3ACOA 2LXYA 4H8SA 2EX3B 3C7NB 4FL9A 4PO2A 3SBTB 4H6IA 1LQ7A 3BLBA 1HXKA 3QA8A 4WPEA 1JQKA 4R5GA 4AZCB 4IWPA 4NSWA 3EJRA 3ABHA 4HY9A 4JN4A 4AZHA 4DYLA 4E81A 2F7OA 1E1DA 2MI7A 2Q12A 4FZPA 4FM3A 2ND1A 4MQDA 3DQGA 1SU6A 3O3MB 2Z8YA 4ILHB 2V0OA 2YLAA 3KDRA 3BUIA 3PLTA 5FIGA 1TQWA 1QWNA 4UDYX 3O3NB 3I04A 3SBSA 2EFLA 1OA1A 4G6QA 2ELBA 2F7QA 4EZOA 3DDFA 1O7DB 1DKYA 5FLEX 2QFFA 2C08A 3DX2A 1SUFA 1WDZA 4FZOA 4R5JA 4I43A 2OBMA 2JNSA 3CVRA 2LM0A 3QNJA 3DX3A 3LVTA 3D2FA 3CKDA 3Q84A 3GI7A 2YL5A 3HAJA 4D8JA 1SU8A 3D4YA 3LLLA 1UPXA 3B51X 3ZEFA 3BUDA 2OZNB 4IM3A 2YIVX 3OK8A 4JNFA 3DDGA 4KIKA 1Y2OA 4E3CA 4EZTA 2Z0OA 4H6HA 3BUPA 3B53X 4F01A 4EZRA 1YWMA 2FICA 4R5KA 1DKXA 2Z0VA 3FD9A 3O3OB 2RAIA 2X3VA 2OO2A 4IWQA 3ZEDA 1Q5LA 3F7WA 2YLLA 1X03A 1OA0A 3EJSA 3EJPA 4ATMA 1URUA 1TQUA 1SU7A 2YI8A 3I2WA 2X3WA 3VEBA 3QNIA 3ER9B 4EZXA 2Q13A 2FYVA 2QKWA 3T48A 3Q0KA 4DCNC 2GAFD 3QWEA 4EZVA 4EZSA 3N8EA 3SYVA 2EWFA 4JWIA 4EZNA 3RPMA 3T49A 7HSCA 1GNTA 1ZWWA 4UDXX 4AZGA 1DKZA 2F1BA 4IW0A 4JWDA 1DG4A 4FZSA 2OW6A 2EFKA 3I39X 3HAHA 4BNEA 3QE6A 4WPCA 1W9MA 4WV7A 1TQVA 4NQIA 1I4TA 4EZZA 4EZWA 3LMFA 3BVXA 1I4DA 2OBLA 4ILGA 4IWOA 2OW7A 2F1AA 1GN9A 5E84A 1TQSA 5C5BA 2GF4A 3DPQA 1I49A 2F7PA 4NPHA 1O7DC 2QXLA 3DPOA 3VKHA 2X5CA 3B52X 1I4LA 4JLCA 1U00A 2YIAA 3RV0A 4EZPA 1R34A 2WYIA 4HYBA 2D1LA 4JWEA 3DYTA 3CZSA 5C5BB 3OWGA 2F18A 3VEAA 1MJGA 2YL6A 4AZ6A 3KAWA 3D2EA 3BVTA 1R5EA 3A98A 2N3KA 3T46A 2PY6A 1E9VA 4IM0A 4R5LA 2X3XA 1QWUA 2NCZA 1X04A 4KIKB 1E2UA 4AZ7A 1BPRA 4JWCA 2RAKA 3L3OM 2RT6A 1QX1A 4JNEA 3EJUA 4B9QA 4HR1A 3EJQA 2D4CA 4EZUA 3DOBA 3UITA 2Z0NA 3BVVA 2OP6A 3D52A 3ER8C 2RAJA 2O0I1 5KBPA 3D51A 2YL9A 4WV5A 3CAZA 4IM2A 1R33A 4M0MA 4AZ5A 1YUWA 4AKVA 3G9GA 4HR1B 2V7YA 4I1QA 4EZYA 3BVWA 3HAIA 2YI9A 3I01A 2YIBA 2WYHA 5TKYA 3L3PA 3RV1A 1GNLA 2YKTA 2JNKA 1PS3A 2PMRA 3BUBA 1OAOA 3DX4A 3OHXM 4F00A 3KAVA 3T4AG 3H0XA 3CV5A 3ERCC 3BVUA 3DX0A 4ILIA 1HTYA 2KHOA 3BUQA 1ZYLA 2ZXQA 2YL8A 4JL9A 4AVMA 1HWWA 2ND0A 3DPPA 3M3WA 3D4ZA 3CZNA 3T47A 3EJTA 4EZQA 3C7NA 1CKRA 1TQTA
chains in the Genus database with same CATH topology
4I43A 4JNEA 1W9MA 4WV7A 2OBMA 2GA9D 4B9QA 2BPRA 2JNSA 2LM0A 4HR1A 4R5IA 3QNJA 4EZUA 3DOBA 3UITA 3D2FA 2OP6A 4EZZA 3ER8C 3GI7A 4EZWA 3LMFA 1SU8A 4D8JA 2WINM 1UPXA 3B51X 4WV5A 3ZEFA 2OBLA 4ILGA 4IM2A 4IM3A 2YIVX 2EX3B 3C7NB 4IWOA 4FL9A 1GN9A 4M0MA 4JNFA 5E84A 1YUWA 4PO2A 3SBTB 4KIKA 4E3CA 4EZTA 4H6IA 3DPQA 4H6HA 3B53X 4HR1B 3QA8A 2V7YA 4F01A 4EZRA 1JQKA 4EZYA 4NPHA 4R5KA 1DKXA 4R5GA 3FD9A 4IWPA 3O3OB 2QXLA 3DPOA 3VKHA 2X5CA 4IWQA 3B52X 4HY9A 4JN4A 3ZEDA 2YI9A 1Q5LA 3I01A 2YIBA 4E81A 1E1DA 3F7WA 4JLCA 1OA0A 1U00A 2YIAA 5TKYA 3RV0A 4EZPA 3RV1A 1SU7A 2YI8A 1GNLA 4HYBA 3VEBA 4JWEA 4FM3A 2ND1A 4MQDA 3ER9B 4EZXA 1SU6A 3O3MB 1OAOA 3OWGA 3DQGA 2Z8YA 3OHXM 3T48A 4ILHB 3KDRA 3VEAA 4F00A 1MJGA 3KAVA 2GAFD 3T4AG 4EZVA 3KAWA 3D2EA 4EZSA 3H0XA 5FIGA 3N8EA 4UDYX 2EWFA 4JWIA 3A98A 4EZNA 3ERCC 3O3NB 4ILIA 2N3KA 3T46A 3I04A 3T49A 7HSCA 1GNTA 3SBSA 2KHOA 1ZYLA 2PY6A 4UDXX 1E9VA 1OA1A 4IM0A 4G6QA 1DKZA 4R5LA 4IW0A 2NCZA 4EZOA 4JL9A 4JWDA 1DG4A 4KIKB 2ND0A 1E2UA 3DPPA 1BPRA 3T47A 4JWCA 4EZQA 3I39X 1DKYA 5FLEX 2QFFA 3C7NA 1SUFA 3L3OM 1CKRA 2RT6A 4R5JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KHO A;  7HSC A;  4JNE A;  4JNF A;  5E84 A;  4EZP A;  4WV7 A;  1YUW A;  4PO2 A;  4B9Q A;  2BPR A;  1DKZ A;  4R5L A;  4R5I A;  4HYB A;  4EZT A;  3QNJ A;  4H6I A;  3DPQ A;  4JWE A;  4EZO A;  4H6H A;  4EZU A;  3DOB A;  4JWD A;  3D2F A;  4EZX A;  3DQG A;  2OP6 A;  4EZZ A;  2V7Y A;  1DG4 A;  3OHX M;  3DPP A;  3T48 A;  4F01 A;  4EZR A;  4EZY A;  4R5K A;  4EZW A;  1DKX A;  4R5G A;  5TKY A;  4F00 A;  4EZS A;  1BPR A;  3T47 A;  4EZV A;  4JWC A;  2QXL A;  3T4A G;  3DPO A;  3D2E A;  1DKY A;  2WIN M;  2QFF A;  4EZQ A;  3H0X A;  3N8E A;  3C7N A;  4WV5 A;  3L3O M;  1CKR A;  4HY9 A;  4JN4 A;  4JWI A;  4EZN A;  1Q5L A;  4E81 A;  4R5J A;  1U00 A;  3T46 A;  3T49 A;  3C7N B;  4FL9 A; 
#chains in the Genus database with same CATH topology
 4AZB A;  3SOG A;  2GA9 D;  2BPR A;  2F7R A;  4R5I A;  2ALW A;  4AZC A;  3D50 A;  3DX1 A;  2WIN M;  4AZI A;  3ACO A;  2LXY A;  4H8S A;  2EX3 B;  3C7N B;  4FL9 A;  4PO2 A;  3SBT B;  4H6I A;  1LQ7 A;  3BLB A;  1HXK A;  3QA8 A;  4WPE A;  1JQK A;  4R5G A;  4AZC B;  4IWP A;  4NSW A;  3EJR A;  3ABH A;  4HY9 A;  4JN4 A;  4AZH A;  4DYL A;  4E81 A;  2F7O A;  1E1D A;  2MI7 A;  2Q12 A;  4FZP A;  4FM3 A;  2ND1 A;  4MQD A;  3DQG A;  1SU6 A;  3O3M B;  2Z8Y A;  4ILH B;  2V0O A;  2YLA A;  3KDR A;  3BUI A;  3PLT A;  5FIG A;  1TQW A;  1QWN A;  4UDY X;  3O3N B;  3I04 A;  3SBS A;  2EFL A;  1OA1 A;  4G6Q A;  2ELB A;  2F7Q A;  4EZO A;  3DDF A;  1O7D B;  1DKY A;  5FLE X;  2QFF A;  2C08 A;  3DX2 A;  1SUF A;  1WDZ A;  4FZO A;  4R5J A;  4I43 A;  2OBM A;  2JNS A;  3CVR A;  2LM0 A;  3QNJ A;  3DX3 A;  3LVT A;  3D2F A;  3CKD A;  3Q84 A;  3GI7 A;  2YL5 A;  3HAJ A;  4D8J A;  1SU8 A;  3D4Y A;  3LLL A;  1UPX A;  3B51 X;  3ZEF A;  3BUD A;  2OZN B;  4IM3 A;  2YIV X;  3OK8 A;  4JNF A;  3DDG A;  4KIK A;  1Y2O A;  4E3C A;  4EZT A;  2Z0O A;  4H6H A;  3BUP A;  3B53 X;  4F01 A;  4EZR A;  1YWM A;  2FIC A;  4R5K A;  1DKX A;  2Z0V A;  3FD9 A;  3O3O B;  2RAI A;  2X3V A;  2OO2 A;  4IWQ A;  3ZED A;  1Q5L A;  3F7W A;  2YLL A;  1X03 A;  1OA0 A;  3EJS A;  3EJP A;  4ATM A;  1URU A;  1TQU A;  1SU7 A;  2YI8 A;  3I2W A;  2X3W A;  3VEB A;  3QNI A;  3ER9 B;  4EZX A;  2Q13 A;  2FYV A;  2QKW A;  3T48 A;  3Q0K A;  4DCN C;  2GAF D;  3QWE A;  4EZV A;  4EZS A;  3N8E A;  3SYV A;  2EWF A;  4JWI A;  4EZN A;  3RPM A;  3T49 A;  7HSC A;  1GNT A;  1ZWW A;  4UDX X;  4AZG A;  1DKZ A;  2F1B A;  4IW0 A;  4JWD A;  1DG4 A;  4FZS A;  2OW6 A;  2EFK A;  3I39 X;  3HAH A;  4BNE A;  3QE6 A;  4WPC A;  1W9M A;  4WV7 A;  1TQV A;  4NQI A;  1I4T A;  4EZZ A;  4EZW A;  3LMF A;  3BVX A;  1I4D A;  2OBL A;  4ILG A;  4IWO A;  2OW7 A;  2F1A A;  1GN9 A;  5E84 A;  1TQS A;  5C5B A;  2GF4 A;  3DPQ A;  1I49 A;  2F7P A;  4NPH A;  1O7D C;  2QXL A;  3DPO A;  3VKH A;  2X5C A;  3B52 X;  1I4L A;  4JLC A;  1U00 A;  2YIA A;  3RV0 A;  4EZP A;  1R34 A;  2WYI A;  4HYB A;  2D1L A;  4JWE A;  3DYT A;  3CZS A;  5C5B B;  3OWG A;  2F18 A;  3VEA A;  1MJG A;  2YL6 A;  4AZ6 A;  3KAW A;  3D2E A;  3BVT A;  1R5E A;  3A98 A;  2N3K A;  3T46 A;  2PY6 A;  1E9V A;  4IM0 A;  4R5L A;  2X3X A;  1QWU A;  2NCZ A;  1X04 A;  4KIK B;  1E2U A;  4AZ7 A;  1BPR A;  4JWC A;  2RAK A;  3L3O M;  2RT6 A;  1QX1 A;  4JNE A;  3EJU A;  4B9Q A;  4HR1 A;  3EJQ A;  2D4C A;  4EZU A;  3DOB A;  3UIT A;  2Z0N A;  3BVV A;  2OP6 A;  3D52 A;  3ER8 C;  2RAJ A;  2O0I 1;  5KBP A;  3D51 A;  2YL9 A;  4WV5 A;  3CAZ A;  4IM2 A;  1R33 A;  4M0M A;  4AZ5 A;  1YUW A;  4AKV A;  3G9G A;  4HR1 B;  2V7Y A;  4I1Q A;  4EZY A;  3BVW A;  3HAI A;  2YI9 A;  3I01 A;  2YIB A;  2WYH A;  5TKY A;  3L3P A;  3RV1 A;  1GNL A;  2YKT A;  2JNK A;  1PS3 A;  2PMR A;  3BUB A;  1OAO A;  3DX4 A;  3OHX M;  4F00 A;  3KAV A;  3T4A G;  3H0X A;  3CV5 A;  3ERC C;  3BVU A;  3DX0 A;  4ILI A;  1HTY A;  2KHO A;  3BUQ A;  1ZYL A;  2ZXQ A;  2YL8 A;  4JL9 A;  4AVM A;  1HWW A;  2ND0 A;  3DPP A;  3M3W A;  3D4Z A;  3CZN A;  3T47 A;  3EJT A;  4EZQ A;  3C7N A;  1CKR A;  1TQT A; 
#chains in the Genus database with same CATH homology
 4I43 A;  4JNE A;  1W9M A;  4WV7 A;  2OBM A;  2GA9 D;  4B9Q A;  2BPR A;  2JNS A;  2LM0 A;  4HR1 A;  4R5I A;  3QNJ A;  4EZU A;  3DOB A;  3UIT A;  3D2F A;  2OP6 A;  4EZZ A;  3ER8 C;  3GI7 A;  4EZW A;  3LMF A;  1SU8 A;  4D8J A;  2WIN M;  1UPX A;  3B51 X;  4WV5 A;  3ZEF A;  2OBL A;  4ILG A;  4IM2 A;  4IM3 A;  2YIV X;  2EX3 B;  3C7N B;  4IWO A;  4FL9 A;  1GN9 A;  4M0M A;  4JNF A;  5E84 A;  1YUW A;  4PO2 A;  3SBT B;  4KIK A;  4E3C A;  4EZT A;  4H6I A;  3DPQ A;  4H6H A;  3B53 X;  4HR1 B;  3QA8 A;  2V7Y A;  4F01 A;  4EZR A;  1JQK A;  4EZY A;  4NPH A;  4R5K A;  1DKX A;  4R5G A;  3FD9 A;  4IWP A;  3O3O B;  2QXL A;  3DPO A;  3VKH A;  2X5C A;  4IWQ A;  3B52 X;  4HY9 A;  4JN4 A;  3ZED A;  2YI9 A;  1Q5L A;  3I01 A;  2YIB A;  4E81 A;  1E1D A;  3F7W A;  4JLC A;  1OA0 A;  1U00 A;  2YIA A;  5TKY A;  3RV0 A;  4EZP A;  3RV1 A;  1SU7 A;  2YI8 A;  1GNL A;  4HYB A;  3VEB A;  4JWE A;  4FM3 A;  2ND1 A;  4MQD A;  3ER9 B;  4EZX A;  1SU6 A;  3O3M B;  1OAO A;  3OWG A;  3DQG A;  2Z8Y A;  3OHX M;  3T48 A;  4ILH B;  3KDR A;  3VEA A;  4F00 A;  1MJG A;  3KAV A;  2GAF D;  3T4A G;  4EZV A;  3KAW A;  3D2E A;  4EZS A;  3H0X A;  5FIG A;  3N8E A;  4UDY X;  2EWF A;  4JWI A;  3A98 A;  4EZN A;  3ERC C;  3O3N B;  4ILI A;  2N3K A;  3T46 A;  3I04 A;  3T49 A;  7HSC A;  1GNT A;  3SBS A;  2KHO A;  1ZYL A;  2PY6 A;  4UDX X;  1E9V A;  1OA1 A;  4IM0 A;  4G6Q A;  1DKZ A;  4R5L A;  4IW0 A;  2NCZ A;  4EZO A;  4JL9 A;  4JWD A;  1DG4 A;  4KIK B;  2ND0 A;  1E2U A;  3DPP A;  1BPR A;  3T47 A;  4JWC A;  4EZQ A;  3I39 X;  1DKY A;  5FLE X;  2QFF A;  3C7N A;  1SUF A;  3L3O M;  1CKR A;  2RT6 A;  4R5J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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