4EZQA

Crystal structure of the substrate binding domain of e.coli dnak in complex with the c-terminal part of pyrrhocoricin (residues 12 to 20)
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
216
structure length
216
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/peptide binding protein
molecule keywords Chaperone protein DnaK
publication title Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK.
pubmed doi rcsb
source organism Escherichia coli
total genus 63
structure length 216
sequence length 216
ec nomenclature
pdb deposition date 2012-05-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4ezqA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4ezqA01
1DKXA 1U00A 2KHOA 3DPPA 4JNFA 4EZZA 4EZSA 3L3OM 3DQGA 1BPRA 4E81A 3DOBA 7HSCA 3N8EA 3T48A 1DKYA 1DKZA 3D2FA 1YUWA 3OHXM 4EZYA 3C7NB 2QXLA 2QFFA 4WV7A 2V7YA 3T46A 3T47A 4R5GA 4EZRA 4EZXA 4FL9A 4R5JA 4JWCA 4EZQA 1Q5LA 3H0XA 4JNEA 4R5KA 4EZVA 4EZTA 4EZOA 4WV5A 1CKRA 4PO2A 4EZPA 4F01A 4R5LA 4R5IA 4EZNA 2BPRA 1DG4A 4EZWA 4H6HA 3QNJA 4JWDA 4JN4A 5E84A 2OP6A 3DPOA 4JWIA 4JWEA 3T49A 2WINM 4B9QA 3C7NA 3DPQA 4HY9A 4F00A 4EZUA 5TKYA 4H6IA 3T4AG 4HYBA 3D2EA
chains in the Genus database with same CATH superfamily
3SOGA 2Z8YA 3L3PA 1YUWA 2Z0OA 4IM2A 2Q12A 3ER8C 2BPRA 4R5LA 1DG4A 1MJGA 3DX0A 3DDGA 4H6IA 3D2EA 3ACOA 2FYVA 5C5BA 3BVWA 4DYLA 1R33A 2X3XA 1SUFA 2N3KA 4EZVA 3I39X 3D4ZA 4B9QA 3EJUA 2OW7A 4HYBA 4WV5A 2V0OA 2PMRA 3BUDA 1LQ7A 3CV5A 3OHXM 4EZYA 2YIVX 1ZYLA 4JNEA 4AKVA 3VEBA 4EZNA 2ALWA 4EZWA 3QA8A 3F7WA 4HR1B 4JN4A 1GN9A 4WPEA 4I43A 3T4AG 5FLEX 1DKXA 4M0MA 3CZSA 7HSCA 1R5EA 1WDZA 4WPCA 1E1DA 4FM3A 2OBLA 2V7YA 1I4DA 3T46A 3SYVA 1I4TA 2RAKA 2C08A 1QWNA 2LM0A 4AVMA 1GNLA 2Z0VA 3O3NB 3BUQA 4JNFA 3RV1A 4JLCA 3O3OB 3EJRA 2F7OA 3Q0KA 3ZEFA 2GAFD 1Y2OA 1Q5LA 4EZQA 4EZTA 3DX1A 2EFLA 3DX3A 3DX2A 3M3WA 4EZZA 3BUBA 3B53X 1PS3A 3DX4A 3EJQA 4D8JA 3EJTA 1O7DB 3I04A 2YL8A 2NCZA 3SBSA 3H0XA 2X3VA 3HAIA 3QNIA 2EX3B 3DDFA 3HAHA 1YWMA 4JWDA 2ELBA 2YIBA 4JWEA 2WINM 2KHOA 4NSWA 4ILHB 2YL6A 3T48A 1OA1A 3C7NB 1ZWWA 3D50A 3BVVA 2JNSA 2OZNB 2F1BA 4R5JA 2RT6A 1JQKA 4EZOA 3D4YA 2OW6A 2EFKA 3PLTA 1HWWA 2OBMA 4BNEA 2YI8A 2QKWA 3ABHA 4R5GA 2ND1A 2GF4A 1GNTA 1W9MA 1E2UA 3D52A 1QWUA 2EWFA 4AZ7A 3CAZA 3LVTA 4ILIA 3I2WA 3C7NA 1I4LA 3B52X 4NQIA 1DKZA 3QE6A 2Z0NA 2FICA 4JWCA 4R5KA 2Q13A 4F01A 4R5IA 4IM0A 5E84A 3UITA 4HY9A 4AZ6A 3BLBA 1OAOA 4AZBA 4AZHA 2GA9D 4ILGA 1BPRA 3CZNA 3ZEDA 1TQTA 3OK8A 3KAWA 2QXLA 4WV7A 3ERCC 4H8SA 3BUPA 4FL9A 1CKRA 1TQVA 4KIKB 4H6HA 3OWGA 3DPOA 3DPQA 3B51X 1U00A 3DPPA 2X5CA 4EZSA 3BUIA 4AZCB 2WYHA 3LLLA 1DKYA 1E9VA 2YIAA 2YL5A 1OA0A 4JL9A 1TQUA 1X04A 4UDYX 1SU6A 4F00A 3RV0A 4AZIA 2RAIA 3EJSA 2D4CA 2YI9A 2X3WA 3BVTA 4KIKA 4DCNC 3ER9B 3Q84A 1HTYA 3T47A 4EZXA 4PO2A 3I01A 4I1QA 4IWOA 3BVXA 4AZCA 3QNJA 3GI7A 3DYTA 4JWIA 3DQGA 3KAVA 3DOBA 3N8EA 2OO2A 3LMFA 4AZGA 4IWQA 2O0I1 1SU8A 4EZPA 4G6QA 2YLAA 4E3CA 3T49A 4EZUA 2YL9A 5KBPA 1QX1A 3CVRA 3CKDA 2LXYA 2ZXQA 3D2FA 1SU7A 5FIGA 2ND0A 3D51A 2JNKA 4EZRA 2F1AA 3HAJA 2F7QA 3O3MB 4NPHA 4FZPA 2D1LA 4AZ5A 1HXKA 5TKYA 2OP6A 3RPMA 1R34A 2F18A 4E81A 4IW0A 3G9GA 2WYIA 2YKTA 1URUA 1X03A 3EJPA 4FZSA 2F7RA 3KDRA 3A98A 1I49A 1TQSA 1TQWA 1UPXA 2RAJA 3QWEA 4ATMA 3L3OM 3BVUA 4MQDA 3VEAA 4HR1A 1O7DC 3FD9A 2QFFA 4IWPA 3SBTB 2MI7A 5C5BB 3VKHA 4FZOA 4UDXX 2PY6A 4IM3A 2YLLA 2F7PA
chains in the Genus database with same CATH topology
4JNFA 3RV1A 3DQGA 4JLCA 3KAVA 3O3OB 2Z8YA 3DOBA 3B52X 3N8EA 3LMFA 1DKZA 1YUWA 4IM2A 3ZEFA 4IWQA 1SU8A 2GAFD 1Q5LA 4JWCA 4EZQA 4R5KA 4EZTA 3ER8C 4EZPA 4F01A 4G6QA 4R5LA 4R5IA 2BPRA 1DG4A 1MJGA 4IM0A 5E84A 4E3CA 3T49A 3UITA 4HY9A 4EZUA 4H6IA 1OAOA 3D2EA 2GA9D 4EZZA 4ILGA 1BPRA 3B53X 3ZEDA 4D8JA 3D2FA 1SU7A 3I04A 3KAWA 2QXLA 4WV7A 2NCZA 3ERCC 3SBSA 5FIGA 2ND0A 4EZRA 4FL9A 1SUFA 2N3KA 3H0XA 1CKRA 4EZVA 2EX3B 3I39X 4KIKB 4H6HA 3O3MB 4JWDA 4NPHA 2YIBA 3OWGA 3DPOA 4B9QA 4JWEA 2WINM 3DPQA 5TKYA 3B51X 4HYBA 2OP6A 4WV5A 1U00A 2KHOA 3DPPA 2X5CA 4EZSA 4ILHB 4E81A 4IW0A 3T48A 1DKYA 1OA1A 3OHXM 4EZYA 1E9VA 2YIAA 3C7NB 2JNSA 2YIVX 1OA0A 1ZYLA 4JL9A 4R5JA 2RT6A 4JNEA 1JQKA 4EZOA 3VEBA 4UDYX 1SU6A 4EZNA 3KDRA 3A98A 4EZWA 3QA8A 3F7WA 4HR1B 4JN4A 1GN9A 4F00A 3RV0A 4I43A 3T4AG 1UPXA 5FLEX 1DKXA 2OBMA 2YI8A 3L3OM 4M0MA 4MQDA 7HSCA 2YI9A 3VEAA 4HR1A 4KIKA 3FD9A 3ER9B 1E1DA 2QFFA 4FM3A 2OBLA 2V7YA 4IWPA 3SBTB 3T46A 3T47A 4R5GA 2ND1A 4EZXA 1GNTA 1W9MA 1E2UA 3VKHA 4PO2A 3I01A 4IWOA 2EWFA 3QNJA 4UDXX 2PY6A 3GI7A 4IM3A 4ILIA 4JWIA 2LM0A 3C7NA 1GNLA 3O3NB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DKX A;  1U00 A;  2KHO A;  3DPP A;  4JNF A;  4EZZ A;  4EZS A;  3L3O M;  3DQG A;  1BPR A;  4E81 A;  3DOB A;  7HSC A;  3N8E A;  3T48 A;  1DKY A;  1DKZ A;  3D2F A;  1YUW A;  3OHX M;  4EZY A;  3C7N B;  2QXL A;  2QFF A;  4WV7 A;  2V7Y A;  3T46 A;  3T47 A;  4R5G A;  4EZR A;  4EZX A;  4FL9 A;  4R5J A;  4JWC A;  4EZQ A;  1Q5L A;  3H0X A;  4JNE A;  4R5K A;  4EZV A;  4EZT A;  4EZO A;  4WV5 A;  1CKR A;  4PO2 A;  4EZP A;  4F01 A;  4R5L A;  4R5I A;  4EZN A;  2BPR A;  1DG4 A;  4EZW A;  4H6H A;  3QNJ A;  4JWD A;  4JN4 A;  5E84 A;  2OP6 A;  3DPO A;  4JWI A;  4JWE A;  3T49 A;  2WIN M;  4B9Q A;  3C7N A;  3DPQ A;  4HY9 A;  4F00 A;  4EZU A;  5TKY A;  4H6I A;  3T4A G;  4HYB A;  3D2E A; 
#chains in the Genus database with same CATH topology
 3SOG A;  2Z8Y A;  3L3P A;  1YUW A;  2Z0O A;  4IM2 A;  2Q12 A;  3ER8 C;  2BPR A;  4R5L A;  1DG4 A;  1MJG A;  3DX0 A;  3DDG A;  4H6I A;  3D2E A;  3ACO A;  2FYV A;  5C5B A;  3BVW A;  4DYL A;  1R33 A;  2X3X A;  1SUF A;  2N3K A;  4EZV A;  3I39 X;  3D4Z A;  4B9Q A;  3EJU A;  2OW7 A;  4HYB A;  4WV5 A;  2V0O A;  2PMR A;  3BUD A;  1LQ7 A;  3CV5 A;  3OHX M;  4EZY A;  2YIV X;  1ZYL A;  4JNE A;  4AKV A;  3VEB A;  4EZN A;  2ALW A;  4EZW A;  3QA8 A;  3F7W A;  4HR1 B;  4JN4 A;  1GN9 A;  4WPE A;  4I43 A;  3T4A G;  5FLE X;  1DKX A;  4M0M A;  3CZS A;  7HSC A;  1R5E A;  1WDZ A;  4WPC A;  1E1D A;  4FM3 A;  2OBL A;  2V7Y A;  1I4D A;  3T46 A;  3SYV A;  1I4T A;  2RAK A;  2C08 A;  1QWN A;  2LM0 A;  4AVM A;  1GNL A;  2Z0V A;  3O3N B;  3BUQ A;  4JNF A;  3RV1 A;  4JLC A;  3O3O B;  3EJR A;  2F7O A;  3Q0K A;  3ZEF A;  2GAF D;  1Y2O A;  1Q5L A;  4EZQ A;  4EZT A;  3DX1 A;  2EFL A;  3DX3 A;  3DX2 A;  3M3W A;  4EZZ A;  3BUB A;  3B53 X;  1PS3 A;  3DX4 A;  3EJQ A;  4D8J A;  3EJT A;  1O7D B;  3I04 A;  2YL8 A;  2NCZ A;  3SBS A;  3H0X A;  2X3V A;  3HAI A;  3QNI A;  2EX3 B;  3DDF A;  3HAH A;  1YWM A;  4JWD A;  2ELB A;  2YIB A;  4JWE A;  2WIN M;  2KHO A;  4NSW A;  4ILH B;  2YL6 A;  3T48 A;  1OA1 A;  3C7N B;  1ZWW A;  3D50 A;  3BVV A;  2JNS A;  2OZN B;  2F1B A;  4R5J A;  2RT6 A;  1JQK A;  4EZO A;  3D4Y A;  2OW6 A;  2EFK A;  3PLT A;  1HWW A;  2OBM A;  4BNE A;  2YI8 A;  2QKW A;  3ABH A;  4R5G A;  2ND1 A;  2GF4 A;  1GNT A;  1W9M A;  1E2U A;  3D52 A;  1QWU A;  2EWF A;  4AZ7 A;  3CAZ A;  3LVT A;  4ILI A;  3I2W A;  3C7N A;  1I4L A;  3B52 X;  4NQI A;  1DKZ A;  3QE6 A;  2Z0N A;  2FIC A;  4JWC A;  4R5K A;  2Q13 A;  4F01 A;  4R5I A;  4IM0 A;  5E84 A;  3UIT A;  4HY9 A;  4AZ6 A;  3BLB A;  1OAO A;  4AZB A;  4AZH A;  2GA9 D;  4ILG A;  1BPR A;  3CZN A;  3ZED A;  1TQT A;  3OK8 A;  3KAW A;  2QXL A;  4WV7 A;  3ERC C;  4H8S A;  3BUP A;  4FL9 A;  1CKR A;  1TQV A;  4KIK B;  4H6H A;  3OWG A;  3DPO A;  3DPQ A;  3B51 X;  1U00 A;  3DPP A;  2X5C A;  4EZS A;  3BUI A;  4AZC B;  2WYH A;  3LLL A;  1DKY A;  1E9V A;  2YIA A;  2YL5 A;  1OA0 A;  4JL9 A;  1TQU A;  1X04 A;  4UDY X;  1SU6 A;  4F00 A;  3RV0 A;  4AZI A;  2RAI A;  3EJS A;  2D4C A;  2YI9 A;  2X3W A;  3BVT A;  4KIK A;  4DCN C;  3ER9 B;  3Q84 A;  1HTY A;  3T47 A;  4EZX A;  4PO2 A;  3I01 A;  4I1Q A;  4IWO A;  3BVX A;  4AZC A;  3QNJ A;  3GI7 A;  3DYT A;  4JWI A;  3DQG A;  3KAV A;  3DOB A;  3N8E A;  2OO2 A;  3LMF A;  4AZG A;  4IWQ A;  2O0I 1;  1SU8 A;  4EZP A;  4G6Q A;  2YLA A;  4E3C A;  3T49 A;  4EZU A;  2YL9 A;  5KBP A;  1QX1 A;  3CVR A;  3CKD A;  2LXY A;  2ZXQ A;  3D2F A;  1SU7 A;  5FIG A;  2ND0 A;  3D51 A;  2JNK A;  4EZR A;  2F1A A;  3HAJ A;  2F7Q A;  3O3M B;  4NPH A;  4FZP A;  2D1L A;  4AZ5 A;  1HXK A;  5TKY A;  2OP6 A;  3RPM A;  1R34 A;  2F18 A;  4E81 A;  4IW0 A;  3G9G A;  2WYI A;  2YKT A;  1URU A;  1X03 A;  3EJP A;  4FZS A;  2F7R A;  3KDR A;  3A98 A;  1I49 A;  1TQS A;  1TQW A;  1UPX A;  2RAJ A;  3QWE A;  4ATM A;  3L3O M;  3BVU A;  4MQD A;  3VEA A;  4HR1 A;  1O7D C;  3FD9 A;  2QFF A;  4IWP A;  3SBT B;  2MI7 A;  5C5B B;  3VKH A;  4FZO A;  4UDX X;  2PY6 A;  4IM3 A;  2YLL A;  2F7P A; 
#chains in the Genus database with same CATH homology
 4JNF A;  3RV1 A;  3DQG A;  4JLC A;  3KAV A;  3O3O B;  2Z8Y A;  3DOB A;  3B52 X;  3N8E A;  3LMF A;  1DKZ A;  1YUW A;  4IM2 A;  3ZEF A;  4IWQ A;  1SU8 A;  2GAF D;  1Q5L A;  4JWC A;  4EZQ A;  4R5K A;  4EZT A;  3ER8 C;  4EZP A;  4F01 A;  4G6Q A;  4R5L A;  4R5I A;  2BPR A;  1DG4 A;  1MJG A;  4IM0 A;  5E84 A;  4E3C A;  3T49 A;  3UIT A;  4HY9 A;  4EZU A;  4H6I A;  1OAO A;  3D2E A;  2GA9 D;  4EZZ A;  4ILG A;  1BPR A;  3B53 X;  3ZED A;  4D8J A;  3D2F A;  1SU7 A;  3I04 A;  3KAW A;  2QXL A;  4WV7 A;  2NCZ A;  3ERC C;  3SBS A;  5FIG A;  2ND0 A;  4EZR A;  4FL9 A;  1SUF A;  2N3K A;  3H0X A;  1CKR A;  4EZV A;  2EX3 B;  3I39 X;  4KIK B;  4H6H A;  3O3M B;  4JWD A;  4NPH A;  2YIB A;  3OWG A;  3DPO A;  4B9Q A;  4JWE A;  2WIN M;  3DPQ A;  5TKY A;  3B51 X;  4HYB A;  2OP6 A;  4WV5 A;  1U00 A;  2KHO A;  3DPP A;  2X5C A;  4EZS A;  4ILH B;  4E81 A;  4IW0 A;  3T48 A;  1DKY A;  1OA1 A;  3OHX M;  4EZY A;  1E9V A;  2YIA A;  3C7N B;  2JNS A;  2YIV X;  1OA0 A;  1ZYL A;  4JL9 A;  4R5J A;  2RT6 A;  4JNE A;  1JQK A;  4EZO A;  3VEB A;  4UDY X;  1SU6 A;  4EZN A;  3KDR A;  3A98 A;  4EZW A;  3QA8 A;  3F7W A;  4HR1 B;  4JN4 A;  1GN9 A;  4F00 A;  3RV0 A;  4I43 A;  3T4A G;  1UPX A;  5FLE X;  1DKX A;  2OBM A;  2YI8 A;  3L3O M;  4M0M A;  4MQD A;  7HSC A;  2YI9 A;  3VEA A;  4HR1 A;  4KIK A;  3FD9 A;  3ER9 B;  1E1D A;  2QFF A;  4FM3 A;  2OBL A;  2V7Y A;  4IWP A;  3SBT B;  3T46 A;  3T47 A;  4R5G A;  2ND1 A;  4EZX A;  1GNT A;  1W9M A;  1E2U A;  3VKH A;  4PO2 A;  3I01 A;  4IWO A;  2EWF A;  3QNJ A;  4UDX X;  2PY6 A;  3GI7 A;  4IM3 A;  4ILI A;  4JWI A;  2LM0 A;  3C7N A;  1GNL A;  3O3N B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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