4HY9A

Crystal structure of the substrate binding domain of e.coli dnak in complex with pyrrhocoricin_lyzz (residues 1 to 11)
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
213
structure length
213
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone, peptide binding protein
molecule keywords Chaperone protein DnaK
publication title Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK.
pubmed doi rcsb
source organism Escherichia coli
total genus 61
structure length 213
sequence length 213
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-11-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4hy9A02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4hy9A01
4HYBA 4JNFA 3DOBA 4WV5A 4F01A 4EZYA 3N8EA 3OHXM 1CKRA 4R5IA 4F00A 3DPQA 4B9QA 4EZOA 1DG4A 4R5LA 4WV7A 3L3OM 4EZXA 3D2FA 4EZVA 3DQGA 4EZNA 4H6IA 2QXLA 4EZPA 1DKYA 1U00A 4R5GA 5E84A 4EZUA 4EZRA 3D2EA 5TKYA 4JWDA 4R5KA 4EZTA 4EZQA 1Q5LA 4H6HA 2BPRA 2OP6A 7HSCA 4JWIA 4EZZA 3DPOA 3DPPA 4PO2A 3C7NA 2KHOA 4JN4A 3T48A 3T49A 4JWCA 4EZSA 3H0XA 1BPRA 1YUWA 3QNJA 4EZWA 4JWEA 2QFFA 2V7YA 1DKXA 4HY9A 4FL9A 2WINM 3T4AG 1DKZA 4JNEA 3C7NB 4E81A 4R5JA 3T46A 3T47A
chains in the Genus database with same CATH superfamily
3SBTB 4M0MA 4MQDA 3EJPA 4EZUA 4EZTA 4FM3A 2OBLA 3HAJA 3ZEFA 3QNIA 3QWEA 2Z8YA 4EZSA 4JN4A 4WPCA 1YUWA 1QWUA 4ILIA 1LQ7A 2F7PA 2QKWA 1HWWA 2F1BA 1I4LA 1I4DA 4NSWA 2YKTA 3G9GA 3DQGA 4IM2A 7HSCA 2LXYA 4EZZA 3SOGA 3VKHA 2YL9A 2F18A 4IWQA 4AZIA 4EZYA 4DCNC 4FZOA 4WV7A 3D2FA 2LM0A 4R5GA 4EZQA 2BPRA 3CKDA 2PMRA 3BUQA 3D51A 3DX4A 4AZ5A 4BNEA 1DKXA 3O3OB 3BUBA 1GNTA 4F00A 3BLBA 3OWGA 2D1LA 3BVTA 1U00A 4FZSA 3DX2A 2OO2A 4JL9A 3LLLA 2X3XA 3BUPA 1O7DB 3PLTA 3EJQA 2RAJA 2V7YA 4IWPA 2V0OA 1HXKA 2MI7A 1O7DC 2GA9D 3ER9B 2RAKA 3DPQA 4EZNA 3HAHA 4D8JA 5FLEX 2O0I1 2YI9A 3CVRA 2Z0VA 4FL9A 2ND0A 1SU8A 3N8EA 1Y2OA 1CKRA 4EZXA 2EWFA 2YLAA 4EZPA 5FIGA 4EZRA 4JWDA 1QX1A 3C7NA 3T49A 4JWCA 1BPRA 4AZ7A 4ATMA 4JWEA 2EFLA 2FICA 3L3PA 1E2UA 3L3OM 1TQSA 4JLCA 2X3WA 1UPXA 5C5BB 3B51X 4JWIA 3DX3A 3LMFA 4UDYX 2YI8A 3SYVA 4HR1B 3ACOA 4NQIA 3Q0KA 3T4AG 4JNEA 2EX3B 4I43A 4R5JA 3T47A 3CAZA 1JQKA 1I49A 4KIKB 2X5CA 3VEBA 4B9QA 1TQUA 2JNKA 2RAIA 4ILGA 1X03A 3QE6A 2OP6A 3H0XA 2GAFD 3CZSA 4AZCA 3B53X 2QFFA 1DKZA 4ILHB 2PY6A 3DDGA 3DOBA 4IWOA 4E3CA 4FZPA 4EZOA 1WDZA 1ZWWA 3KAVA 3BVUA 2F7OA 4WPEA 3ABHA 5TKYA 1SU6A 3D50A 2YIVX 4NPHA 2YL8A 5KBPA 2WYIA 3LVTA 2NCZA 3KAWA 4IM0A 1QWNA 3RPMA 2OBMA 3RV0A 3VEAA 1OA0A 1ZYLA 2ALWA 1R33A 2Q12A 4AZ6A 3I01A 3B52X 4IW0A 3D52A 1PS3A 2F7QA 4UDXX 2OW6A 4HYBA 4JNFA 3BUDA 3BVVA 2OW7A 3ER8C 1TQTA 2Z0OA 5E84A 3DX1A 3M3WA 1HTYA 2F7RA 1OA1A 3SBSA 3D4YA 3O3MB 3RV1A 2D4CA 4E81A 1URUA 2WYHA 1SU7A 3ERCC 3CV5A 2ND1A 1OAOA 2GF4A 2YL6A 3KDRA 1R34A 1TQWA 2C08A 1R5EA 2JNSA 2YLLA 3DPPA 2YL5A 3OK8A 3GI7A 1E1DA 3I2WA 2YIBA 1E9VA 2WINM 2Q13A 3DX0A 4R5IA 3DDFA 1DG4A 2FYVA 4EZVA 2YIAA 1GN9A 1Q5LA 3D2EA 3F7WA 2Z0NA 4PO2A 2KHOA 1MJGA 4I1QA 3I04A 3CZNA 3EJRA 4AZHA 3BUIA 3C7NB 4WV5A 3BVXA 2F1AA 2QXLA 3FD9A 4H6HA 1X04A 2N3KA 3DPOA 2ELBA 4H8SA 2ZXQA 3I39X 3HAIA 4HY9A 3ZEDA 3T46A 4DYLA 3OHXM 4AZBA 4R5LA 4AZGA 4H6IA 3QA8A 3UITA 1YWMA 4AKVA 3T48A 3EJTA 1I4TA 3QNJA 3O3NB 1GNLA 3EJUA 1SUFA 3EJSA 5C5BA 4F01A 4AVMA 1W9MA 4AZCB 3DYTA 2EFKA 4HR1A 1DKYA 2RT6A 4R5KA 3A98A 4IM3A 3BVWA 4G6QA 2X3VA 4EZWA 4KIKA 1TQVA 3Q84A 2OZNB 3D4ZA
chains in the Genus database with same CATH topology
3DOBA 2GA9D 3ER9B 3SBTB 4R5IA 4IWOA 4E3CA 3DPQA 4EZOA 1DG4A 4EZVA 3KAVA 4EZNA 4M0MA 2YIAA 4MQDA 1GN9A 4D8JA 4EZUA 1Q5LA 3D2EA 5TKYA 4EZTA 1SU6A 4FM3A 2OBLA 3F7WA 3ZEFA 2YIVX 4NPHA 4PO2A 2Z8YA 2KHOA 4JN4A 1MJGA 4EZSA 2NCZA 5FLEX 3I04A 1YUWA 2YI9A 3KAWA 4ILIA 4IM0A 4FL9A 3C7NB 2ND0A 4WV5A 1SU8A 3N8EA 2OBMA 1CKRA 3RV0A 3VEAA 1OA0A 4EZXA 2EWFA 3DQGA 2QXLA 4EZPA 4IM2A 5FIGA 3FD9A 1ZYLA 4EZRA 4JWDA 4H6HA 7HSCA 3I01A 2N3KA 4EZZA 3DPOA 3C7NA 3B52X 3T49A 4JWCA 1BPRA 3VKHA 4IW0A 3I39X 4JWEA 4HY9A 4UDXX 4IWQA 3ZEDA 3T46A 4HYBA 4JNFA 4EZYA 1E2UA 3OHXM 4R5LA 4WV7A 3L3OM 3D2FA 3ER8C 4H6IA 3QA8A 2LM0A 4JLCA 4R5GA 5E84A 4EZQA 1UPXA 2BPRA 3B51X 1OA1A 4JWIA 3UITA 3SBSA 3T48A 3LMFA 4UDYX 2YI8A 3O3MB 3QNJA 4HR1B 3O3NB 1GNLA 1DKXA 3RV1A 3T4AG 3O3OB 4JNEA 2EX3B 1SUFA 4E81A 4I43A 4R5JA 3T47A 1SU7A 4F01A 1JQKA 1W9MA 3ERCC 1GNTA 2X5CA 4KIKB 4F00A 2ND1A 3VEBA 4B9QA 4ILGA 3OWGA 1OAOA 3KDRA 1DKYA 1U00A 4HR1A 2RT6A 4R5KA 2OP6A 3A98A 2JNSA 4IM3A 3DPPA 3H0XA 4JL9A 3GI7A 4G6QA 1E1DA 2GAFD 4EZWA 4KIKA 2YIBA 2QFFA 3B53X 2V7YA 4IWPA 1E9VA 2WINM 1DKZA 4ILHB 2PY6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HYB A;  4JNF A;  3DOB A;  4WV5 A;  4F01 A;  4EZY A;  3N8E A;  3OHX M;  1CKR A;  4R5I A;  4F00 A;  3DPQ A;  4B9Q A;  4EZO A;  1DG4 A;  4R5L A;  4WV7 A;  3L3O M;  4EZX A;  3D2F A;  4EZV A;  3DQG A;  4EZN A;  4H6I A;  2QXL A;  4EZP A;  1DKY A;  1U00 A;  4R5G A;  5E84 A;  4EZU A;  4EZR A;  3D2E A;  5TKY A;  4JWD A;  4R5K A;  4EZT A;  4EZQ A;  1Q5L A;  4H6H A;  2BPR A;  2OP6 A;  7HSC A;  4JWI A;  4EZZ A;  3DPO A;  3DPP A;  4PO2 A;  3C7N A;  2KHO A;  4JN4 A;  3T48 A;  3T49 A;  4JWC A;  4EZS A;  3H0X A;  1BPR A;  1YUW A;  3QNJ A;  4EZW A;  4JWE A;  2QFF A;  2V7Y A;  1DKX A;  4HY9 A;  4FL9 A;  2WIN M;  3T4A G;  1DKZ A;  4JNE A;  3C7N B;  4E81 A;  4R5J A;  3T46 A;  3T47 A; 
#chains in the Genus database with same CATH topology
 3SBT B;  4M0M A;  4MQD A;  3EJP A;  4EZU A;  4EZT A;  4FM3 A;  2OBL A;  3HAJ A;  3ZEF A;  3QNI A;  3QWE A;  2Z8Y A;  4EZS A;  4JN4 A;  4WPC A;  1YUW A;  1QWU A;  4ILI A;  1LQ7 A;  2F7P A;  2QKW A;  1HWW A;  2F1B A;  1I4L A;  1I4D A;  4NSW A;  2YKT A;  3G9G A;  3DQG A;  4IM2 A;  7HSC A;  2LXY A;  4EZZ A;  3SOG A;  3VKH A;  2YL9 A;  2F18 A;  4IWQ A;  4AZI A;  4EZY A;  4DCN C;  4FZO A;  4WV7 A;  3D2F A;  2LM0 A;  4R5G A;  4EZQ A;  2BPR A;  3CKD A;  2PMR A;  3BUQ A;  3D51 A;  3DX4 A;  4AZ5 A;  4BNE A;  1DKX A;  3O3O B;  3BUB A;  1GNT A;  4F00 A;  3BLB A;  3OWG A;  2D1L A;  3BVT A;  1U00 A;  4FZS A;  3DX2 A;  2OO2 A;  4JL9 A;  3LLL A;  2X3X A;  3BUP A;  1O7D B;  3PLT A;  3EJQ A;  2RAJ A;  2V7Y A;  4IWP A;  2V0O A;  1HXK A;  2MI7 A;  1O7D C;  2GA9 D;  3ER9 B;  2RAK A;  3DPQ A;  4EZN A;  3HAH A;  4D8J A;  5FLE X;  2O0I 1;  2YI9 A;  3CVR A;  2Z0V A;  4FL9 A;  2ND0 A;  1SU8 A;  3N8E A;  1Y2O A;  1CKR A;  4EZX A;  2EWF A;  2YLA A;  4EZP A;  5FIG A;  4EZR A;  4JWD A;  1QX1 A;  3C7N A;  3T49 A;  4JWC A;  1BPR A;  4AZ7 A;  4ATM A;  4JWE A;  2EFL A;  2FIC A;  3L3P A;  1E2U A;  3L3O M;  1TQS A;  4JLC A;  2X3W A;  1UPX A;  5C5B B;  3B51 X;  4JWI A;  3DX3 A;  3LMF A;  4UDY X;  2YI8 A;  3SYV A;  4HR1 B;  3ACO A;  4NQI A;  3Q0K A;  3T4A G;  4JNE A;  2EX3 B;  4I43 A;  4R5J A;  3T47 A;  3CAZ A;  1JQK A;  1I49 A;  4KIK B;  2X5C A;  3VEB A;  4B9Q A;  1TQU A;  2JNK A;  2RAI A;  4ILG A;  1X03 A;  3QE6 A;  2OP6 A;  3H0X A;  2GAF D;  3CZS A;  4AZC A;  3B53 X;  2QFF A;  1DKZ A;  4ILH B;  2PY6 A;  3DDG A;  3DOB A;  4IWO A;  4E3C A;  4FZP A;  4EZO A;  1WDZ A;  1ZWW A;  3KAV A;  3BVU A;  2F7O A;  4WPE A;  3ABH A;  5TKY A;  1SU6 A;  3D50 A;  2YIV X;  4NPH A;  2YL8 A;  5KBP A;  2WYI A;  3LVT A;  2NCZ A;  3KAW A;  4IM0 A;  1QWN A;  3RPM A;  2OBM A;  3RV0 A;  3VEA A;  1OA0 A;  1ZYL A;  2ALW A;  1R33 A;  2Q12 A;  4AZ6 A;  3I01 A;  3B52 X;  4IW0 A;  3D52 A;  1PS3 A;  2F7Q A;  4UDX X;  2OW6 A;  4HYB A;  4JNF A;  3BUD A;  3BVV A;  2OW7 A;  3ER8 C;  1TQT A;  2Z0O A;  5E84 A;  3DX1 A;  3M3W A;  1HTY A;  2F7R A;  1OA1 A;  3SBS A;  3D4Y A;  3O3M B;  3RV1 A;  2D4C A;  4E81 A;  1URU A;  2WYH A;  1SU7 A;  3ERC C;  3CV5 A;  2ND1 A;  1OAO A;  2GF4 A;  2YL6 A;  3KDR A;  1R34 A;  1TQW A;  2C08 A;  1R5E A;  2JNS A;  2YLL A;  3DPP A;  2YL5 A;  3OK8 A;  3GI7 A;  1E1D A;  3I2W A;  2YIB A;  1E9V A;  2WIN M;  2Q13 A;  3DX0 A;  4R5I A;  3DDF A;  1DG4 A;  2FYV A;  4EZV A;  2YIA A;  1GN9 A;  1Q5L A;  3D2E A;  3F7W A;  2Z0N A;  4PO2 A;  2KHO A;  1MJG A;  4I1Q A;  3I04 A;  3CZN A;  3EJR A;  4AZH A;  3BUI A;  3C7N B;  4WV5 A;  3BVX A;  2F1A A;  2QXL A;  3FD9 A;  4H6H A;  1X04 A;  2N3K A;  3DPO A;  2ELB A;  4H8S A;  2ZXQ A;  3I39 X;  3HAI A;  4HY9 A;  3ZED A;  3T46 A;  4DYL A;  3OHX M;  4AZB A;  4R5L A;  4AZG A;  4H6I A;  3QA8 A;  3UIT A;  1YWM A;  4AKV A;  3T48 A;  3EJT A;  1I4T A;  3QNJ A;  3O3N B;  1GNL A;  3EJU A;  1SUF A;  3EJS A;  5C5B A;  4F01 A;  4AVM A;  1W9M A;  4AZC B;  3DYT A;  2EFK A;  4HR1 A;  1DKY A;  2RT6 A;  4R5K A;  3A98 A;  4IM3 A;  3BVW A;  4G6Q A;  2X3V A;  4EZW A;  4KIK A;  1TQV A;  3Q84 A;  2OZN B;  3D4Z A; 
#chains in the Genus database with same CATH homology
 3DOB A;  2GA9 D;  3ER9 B;  3SBT B;  4R5I A;  4IWO A;  4E3C A;  3DPQ A;  4EZO A;  1DG4 A;  4EZV A;  3KAV A;  4EZN A;  4M0M A;  2YIA A;  4MQD A;  1GN9 A;  4D8J A;  4EZU A;  1Q5L A;  3D2E A;  5TKY A;  4EZT A;  1SU6 A;  4FM3 A;  2OBL A;  3F7W A;  3ZEF A;  2YIV X;  4NPH A;  4PO2 A;  2Z8Y A;  2KHO A;  4JN4 A;  1MJG A;  4EZS A;  2NCZ A;  5FLE X;  3I04 A;  1YUW A;  2YI9 A;  3KAW A;  4ILI A;  4IM0 A;  4FL9 A;  3C7N B;  2ND0 A;  4WV5 A;  1SU8 A;  3N8E A;  2OBM A;  1CKR A;  3RV0 A;  3VEA A;  1OA0 A;  4EZX A;  2EWF A;  3DQG A;  2QXL A;  4EZP A;  4IM2 A;  5FIG A;  3FD9 A;  1ZYL A;  4EZR A;  4JWD A;  4H6H A;  7HSC A;  3I01 A;  2N3K A;  4EZZ A;  3DPO A;  3C7N A;  3B52 X;  3T49 A;  4JWC A;  1BPR A;  3VKH A;  4IW0 A;  3I39 X;  4JWE A;  4HY9 A;  4UDX X;  4IWQ A;  3ZED A;  3T46 A;  4HYB A;  4JNF A;  4EZY A;  1E2U A;  3OHX M;  4R5L A;  4WV7 A;  3L3O M;  3D2F A;  3ER8 C;  4H6I A;  3QA8 A;  2LM0 A;  4JLC A;  4R5G A;  5E84 A;  4EZQ A;  1UPX A;  2BPR A;  3B51 X;  1OA1 A;  4JWI A;  3UIT A;  3SBS A;  3T48 A;  3LMF A;  4UDY X;  2YI8 A;  3O3M B;  3QNJ A;  4HR1 B;  3O3N B;  1GNL A;  1DKX A;  3RV1 A;  3T4A G;  3O3O B;  4JNE A;  2EX3 B;  1SUF A;  4E81 A;  4I43 A;  4R5J A;  3T47 A;  1SU7 A;  4F01 A;  1JQK A;  1W9M A;  3ERC C;  1GNT A;  2X5C A;  4KIK B;  4F00 A;  2ND1 A;  3VEB A;  4B9Q A;  4ILG A;  3OWG A;  1OAO A;  3KDR A;  1DKY A;  1U00 A;  4HR1 A;  2RT6 A;  4R5K A;  2OP6 A;  3A98 A;  2JNS A;  4IM3 A;  3DPP A;  3H0X A;  4JL9 A;  3GI7 A;  4G6Q A;  1E1D A;  2GAF D;  4EZW A;  4KIK A;  2YIB A;  2QFF A;  3B53 X;  2V7Y A;  4IWP A;  1E9V A;  2WIN M;  1DKZ A;  4ILH B;  2PY6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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