1DG4A

Nmr structure of the substrate binding domain of dnak in the apo form
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
111
structure length
111
Chain Sequence
LSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
publication title Structural insights into substrate binding by the molecular chaperone DnaK.
pubmed doi rcsb
molecule tags Chaperone
molecule keywords DNAK
total genus 15
structure length 111
sequence length 111
ec nomenclature
pdb deposition date 1999-11-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 1dg4A00
2V7YA 4HY9A 4EZUA 4E81A 4EZYA 7HSCA 4F00A 4JWIA 1Q5LA 1DKZA 4EZPA 4EZRA 1U00A 3DQGA 1BPRA 4HYBA 2QXLA 3D2FA 1DKXA 3QNJA 4JNFA 4WV7A 4R5LA 3N8EA 4R5IA 4EZNA 4PO2A 3D2EA 4F01A 4R5JA 5TKYA 3C7NB 3C7NA 4EZVA 1CKRA 4JN4A 4R5GA 2BPRA 4EZWA 4EZXA 4EZQA 4EZTA 4EZSA 4B9QA 3DPPA 4FL9A 3DPOA 1DKYA 4EZOA 2OP6A 4R5KA 4JNEA 4JWDA 4EZZA 3H0XA 4JWCA 3DOBA 5E84A 4JWEA 1DG4A 3DPQA 1YUWA 2KHOA 4WV5A
chains in the Genus database with same CATH superfamily
2V7YA 4HY9A 4ILGA 4EZUA 4E81A 4ILHB 4EZYA 7HSCA 4F00A 4JWIA 1Q5LA 1DKZA 4ILIA 4EZPA 4EZRA 1U00A 3DQGA 1BPRA 4HYBA 2QXLA 3D2FA 1DKXA 3QNJA 4JNFA 4WV7A 4R5LA 3N8EA 4I43A 4R5IA 4EZNA 4PO2A 3D2EA 4F01A 4R5JA 5TKYA 3C7NB 3C7NA 3SBSA 4EZVA 4JN4A 4R5GA 2BPRA 4EZWA 3ZEFA 4EZXA 4EZQA 1CKRA 4EZTA 4EZSA 4B9QA 3DPPA 4FL9A 3DPOA 1DKYA 4EZOA 2OP6A 4R5KA 4JNEA 4JWDA 4EZZA 3H0XA 4JWCA 4MQDA 3DOBA 5E84A 4JWEA 1DG4A 3DPQA 1YUWA 3SBTB 2KHOA 4WV5A
chains in the Genus database with same CATH topology
2V7YA 4HY9A 4ILGA 4EZUA 4E81A 4ILHB 4EZYA 7HSCA 4F00A 4JWIA 1Q5LA 1DKZA 4ILIA 4EZPA 4EZRA 1U00A 3DQGA 1BPRA 4HYBA 2QXLA 3D2FA 1DKXA 3QNJA 4JNFA 4WV7A 4R5LA 3N8EA 4I43A 4R5IA 4EZNA 4PO2A 3D2EA 4F01A 4R5JA 5TKYA 3C7NB 3C7NA 3SBSA 4EZVA 4JN4A 4R5GA 2BPRA 4EZWA 3ZEFA 4EZXA 4EZQA 1CKRA 4EZTA 4EZSA 4B9QA 3DPPA 4FL9A 3DPOA 1DKYA 4EZOA 2OP6A 4R5KA 4JNEA 4JWDA 4EZZA 3H0XA 4JWCA 4MQDA 3DOBA 5E84A 4JWEA 1DG4A 3DPQA 1YUWA 3SBTB 2KHOA 4WV5A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2V7Y A;  4HY9 A;  4EZU A;  4E81 A;  4EZY A;  7HSC A;  4F00 A;  4JWI A;  1Q5L A;  1DKZ A;  4EZP A;  4EZR A;  1U00 A;  3DQG A;  1BPR A;  4HYB A;  2QXL A;  3D2F A;  1DKX A;  3QNJ A;  4JNF A;  4WV7 A;  4R5L A;  3N8E A;  4R5I A;  4EZN A;  4PO2 A;  3D2E A;  4F01 A;  4R5J A;  5TKY A;  3C7N B;  3C7N A;  4EZV A;  1CKR A;  4JN4 A;  4R5G A;  2BPR A;  4EZW A;  4EZX A;  4EZQ A;  4EZT A;  4EZS A;  4B9Q A;  3DPP A;  4FL9 A;  3DPO A;  1DKY A;  4EZO A;  2OP6 A;  4R5K A;  4JNE A;  4JWD A;  4EZZ A;  3H0X A;  4JWC A;  3DOB A;  5E84 A;  4JWE A;  1DG4 A;  3DPQ A;  1YUW A;  2KHO A;  4WV5 A; 
#chains in the Genus database with same CATH topology
 2V7Y A;  4HY9 A;  4ILG A;  4EZU A;  4E81 A;  4ILH B;  4EZY A;  7HSC A;  4F00 A;  4JWI A;  1Q5L A;  1DKZ A;  4ILI A;  4EZP A;  4EZR A;  1U00 A;  3DQG A;  1BPR A;  4HYB A;  2QXL A;  3D2F A;  1DKX A;  3QNJ A;  4JNF A;  4WV7 A;  4R5L A;  3N8E A;  4I43 A;  4R5I A;  4EZN A;  4PO2 A;  3D2E A;  4F01 A;  4R5J A;  5TKY A;  3C7N B;  3C7N A;  3SBS A;  4EZV A;  4JN4 A;  4R5G A;  2BPR A;  4EZW A;  3ZEF A;  4EZX A;  4EZQ A;  1CKR A;  4EZT A;  4EZS A;  4B9Q A;  3DPP A;  4FL9 A;  3DPO A;  1DKY A;  4EZO A;  2OP6 A;  4R5K A;  4JNE A;  4JWD A;  4EZZ A;  3H0X A;  4JWC A;  4MQD A;  3DOB A;  5E84 A;  4JWE A;  1DG4 A;  3DPQ A;  1YUW A;  3SBT B;  2KHO A;  4WV5 A; 
#chains in the Genus database with same CATH homology
 2V7Y A;  4HY9 A;  4ILG A;  4EZU A;  4E81 A;  4ILH B;  4EZY A;  7HSC A;  4F00 A;  4JWI A;  1Q5L A;  1DKZ A;  4ILI A;  4EZP A;  4EZR A;  1U00 A;  3DQG A;  1BPR A;  4HYB A;  2QXL A;  3D2F A;  1DKX A;  3QNJ A;  4JNF A;  4WV7 A;  4R5L A;  3N8E A;  4I43 A;  4R5I A;  4EZN A;  4PO2 A;  3D2E A;  4F01 A;  4R5J A;  5TKY A;  3C7N B;  3C7N A;  3SBS A;  4EZV A;  4JN4 A;  4R5G A;  2BPR A;  4EZW A;  3ZEF A;  4EZX A;  4EZQ A;  1CKR A;  4EZT A;  4EZS A;  4B9Q A;  3DPP A;  4FL9 A;  3DPO A;  1DKY A;  4EZO A;  2OP6 A;  4R5K A;  4JNE A;  4JWD A;  4EZZ A;  3H0X A;  4JWC A;  4MQD A;  3DOB A;  5E84 A;  4JWE A;  1DG4 A;  3DPQ A;  1YUW A;  3SBT B;  2KHO A;  4WV5 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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