3QNJA

Crystal structure of the substrate binding domain of e.coli dnak in complex with the antimicrobial peptide oncocin
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
210
structure length
204
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/antimicrobial protein
molecule keywords Chaperone protein DnaK
publication title Rational Design of Oncocin Derivatives with Superior Protease Stabilities and Antibacterial Activities Based on the High-Resolution Structure of the Oncocin-DnaK Complex.
pubmed doi rcsb
source organism Escherichia coli
total genus 54
structure length 204
sequence length 210
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-02-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3qnjA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 3qnjA01
1DKYA 2BPRA 2OP6A 4F00A 1DG4A 4EZTA 4EZZA 4JWDA 4JWEA 4HY9A 4JWCA 4JWIA 4EZXA 5E84A 1Q5LA 2QXLA 3D2FA 1U00A 3DOBA 3H0XA 4EZVA 4EZRA 4R5LA 4R5KA 3N8EA 3DPPA 2WINM 4HYBA 4EZQA 4WV7A 4PO2A 4E81A 2V7YA 2QFFA 3DPOA 1YUWA 4R5GA 4EZUA 3C7NB 3T4AG 4B9QA 3T46A 3T47A 1DKXA 3OHXM 3T49A 4JN4A 2KHOA 5TKYA 4EZNA 4EZPA 3QNJA 4FL9A 4EZWA 3L3OM 4EZYA 3D2EA 4EZSA 3C7NA 4JNFA 4H6IA 4F01A 3DPQA 4WV5A 7HSCA 1DKZA 4H6HA 4R5JA 1BPRA 3DQGA 1CKRA 4EZOA 4R5IA 4JNEA 3T48A
chains in the Genus database with same CATH superfamily
5FLEX 1DG4A 3I04A 3DDFA 3ZEDA 2X5CA 1YWMA 4ILGA 3ZEFA 3SBTB 3B53X 3BUBA 3DPQA 3DX1A 1UPXA 4H6HA 3BLBA 3O3OB 3CAZA 2BPRA 2OP6A 2F1BA 4EZVA 2EX3B 4FM3A 1HTYA 2X3WA 1ZWWA 3DDGA 3EJQA 4IM2A 1QX1A 4UDXX 4BNEA 3D4ZA 3EJTA 2OBLA 4F01A 3KAVA 2EFKA 3QWEA 2YL6A 1HWWA 4ILHB 3CZNA 4WPEA 2GA9D 4AZHA 3DPPA 2Z0VA 3BVTA 1I4TA 2WYHA 1JQKA 2LM0A 3BUQA 3HAJA 2YL9A 3CKDA 3BVUA 4EZZA 3DOBA 3DX3A 2Z0NA 3BVVA 3O3MB 4D8JA 1R5EA 3SYVA 4MQDA 3QNIA 2RT6A 2F7PA 2X3XA 4ATMA 4R5JA 2FICA 3EJSA 3H0XA 4IWOA 4DYLA 3KAWA 5TKYA 4E3CA 3D2EA 3HAIA 4JNFA 1E2UA 2X3VA 1X04A 2MI7A 4AZCA 4JLCA 4IWQA 3B52X 4AVMA 4F00A 4R5KA 3EJRA 3OK8A 2F7RA 2ND1A 3T4AG 3T46A 3L3PA 3L3OM 4AZCB 2Z0OA 4AZ5A 3LLLA 3GI7A 3SOGA 3I01A 4ILIA 4AZ6A 3LMFA 2OZNB 4AZBA 3BUDA 3PLTA 3KDRA 4EZNA 2F7QA 3OHXM 5KBPA 1TQTA 1SU7A 3QA8A 1O7DB 2D1LA 4AZIA 2YKTA 1URUA 2ZXQA 2OW7A 3VKHA 4HY9A 4EZXA 1QWUA 1SU8A 3EJPA 4EZRA 4NQIA 1GN9A 2F7OA 2YL5A 2OBMA 2O0I1 7HSCA 2JNSA 3BUPA 3FD9A 4M0MA 3B51X 1DKYA 2ND0A 4JWEA 1I4LA 1Q5LA 3D2FA 3N8EA 4WV7A 4HYBA 4EZQA 4I43A 1YUWA 1LQ7A 3RPMA 4EZPA 1SUFA 3O3NB 4EZSA 1SU6A 3D4YA 3ER9B 1QWNA 4R5IA 3T48A 4H8SA 1U00A 2PMRA 2ELBA 1MJGA 2V7YA 3DPOA 2F1AA 3M3WA 4B9QA 4NPHA 4EZYA 1R34A 5C5BA 2GAFD 3LVTA 1TQUA 4JWCA 2GF4A 4PO2A 3D51A 3VEAA 3F7WA 1I4DA 4IM0A 2YLLA 3C7NA 4FZSA 5C5BB 1GNLA 2RAIA 4JL9A 2PY6A 2YIVX 2RAJA 1PS3A 4JWIA 2QXLA 1I49A 4IW0A 3BVWA 4WPCA 2NCZA 1OA1A 3C7NB 2OW6A 2KHOA 3G9GA 4EZWA 2YIAA 2ALWA 1ZYLA 4WV5A 3A98A 2LXYA 3DX0A 3DX2A 1CKRA 2N3KA 4IM3A 4JWDA 5FIGA 1HXKA 2JNKA 3RV1A 4IWPA 3ERCC 3D52A 3CV5A 4JN4A 2F18A 3VEBA 4HR1A 2Z8YA 1E1DA 4DCNC 4I1QA 4AKVA 3Q84A 1W9MA 2FYVA 5E84A 1GNTA 2WINM 2YI8A 2QFFA 3EJUA 4HR1B 3I39X 2V0OA 2QKWA 1OAOA 4FL9A 3RV0A 3BUIA 4AZGA 4KIKA 3DQGA 2EWFA 2EFLA 3CVRA 2YI9A 3CZSA 3QE6A 4R5LA 4AZ7A 1O7DC 1Y2OA 3SBSA 4E81A 4FZPA 2YIBA 4R5GA 3UITA 4G6QA 1DKXA 3T49A 3I2WA 4NSWA 4KIKB 3QNJA 2RAKA 2OO2A 1WDZA 2C08A 1OA0A 3DX4A 1E9VA 3Q0KA 2Q12A 1TQWA 2YLAA 4FZOA 4UDYX 3ACOA 4EZTA 1R33A 2D4CA 1TQVA 3BVXA 3ER8C 3DYTA 1TQSA 3OWGA 2YL8A 3T47A 3HAHA 3D50A 2WYIA 1X03A 4H6IA 2Q13A 1DKZA 3ABHA 1BPRA 4EZOA 4JNEA 4EZUA
chains in the Genus database with same CATH topology
1DKYA 2ND0A 5FLEX 2N3KA 4IM3A 1DG4A 3I04A 4JWDA 4JWEA 5FIGA 3H0XA 1Q5LA 4IWOA 3D2FA 3ZEDA 3RV1A 3N8EA 4WV7A 4HYBA 4EZQA 4IWPA 3ERCC 2X5CA 4I43A 1YUWA 3KAWA 4EZPA 4JN4A 1SUFA 5TKYA 4ILGA 3VEBA 3ZEFA 4HR1A 4E3CA 3O3NB 3D2EA 1SU6A 2Z8YA 3B53X 4EZSA 3SBTB 4JNFA 1E2UA 1E1DA 3DPQA 4JLCA 4IWQA 1UPXA 3B52X 4H6HA 3O3OB 3ER9B 4R5IA 3T48A 2BPRA 2OP6A 4F00A 1W9MA 5E84A 1U00A 2EX3B 4EZVA 4FM3A 4R5KA 1MJGA 1GNTA 2WINM 2YI8A 2V7YA 2QFFA 3DPOA 4HR1B 3I39X 2ND1A 3T4AG 4B9QA 3T46A 4NPHA 1OAOA 4FL9A 4IM2A 3RV0A 3L3OM 4UDXX 4EZYA 3GI7A 2OBLA 4F01A 4KIKA 3KAVA 3I01A 2GAFD 3DQGA 2EWFA 4ILHB 4ILIA 2GA9D 3LMFA 2YI9A 4JWCA 4R5LA 3DPPA 4PO2A 4E81A 3SBSA 3KDRA 2YIBA 3VEAA 4R5GA 3UITA 4G6QA 1DKXA 3F7WA 3OHXM 3T49A 4EZNA 4KIKB 3QNJA 4IM0A 1SU7A 3C7NA 1OA0A 3QA8A 1E9VA 1GNLA 1JQKA 4JL9A 2LM0A 2PY6A 2YIVX 4UDYX 4EZTA 4EZZA 3VKHA 4HY9A 4EZXA 4JWIA 3DOBA 2QXLA 1SU8A 4EZRA 4IW0A 2NCZA 3ER8C 1OA1A 3C7NB 3OWGA 1GN9A 3T47A 3O3MB 4D8JA 2KHOA 4EZWA 2YIAA 2OBMA 4MQDA 1ZYLA 4H6IA 2RT6A 4WV5A 7HSCA 3A98A 1DKZA 2JNSA 3FD9A 4R5JA 1BPRA 1CKRA 4EZOA 4M0MA 4JNEA 4EZUA 3B51X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DKY A;  2BPR A;  2OP6 A;  4F00 A;  1DG4 A;  4EZT A;  4EZZ A;  4JWD A;  4JWE A;  4HY9 A;  4JWC A;  4JWI A;  4EZX A;  5E84 A;  1Q5L A;  2QXL A;  3D2F A;  1U00 A;  3DOB A;  3H0X A;  4EZV A;  4EZR A;  4R5L A;  4R5K A;  3N8E A;  3DPP A;  2WIN M;  4HYB A;  4EZQ A;  4WV7 A;  4PO2 A;  4E81 A;  2V7Y A;  2QFF A;  3DPO A;  1YUW A;  4R5G A;  4EZU A;  3C7N B;  3T4A G;  4B9Q A;  3T46 A;  3T47 A;  1DKX A;  3OHX M;  3T49 A;  4JN4 A;  2KHO A;  5TKY A;  4EZN A;  4EZP A;  3QNJ A;  4FL9 A;  4EZW A;  3L3O M;  4EZY A;  3D2E A;  4EZS A;  3C7N A;  4JNF A;  4H6I A;  4F01 A;  3DPQ A;  4WV5 A;  7HSC A;  1DKZ A;  4H6H A;  4R5J A;  1BPR A;  3DQG A;  1CKR A;  4EZO A;  4R5I A;  4JNE A;  3T48 A; 
#chains in the Genus database with same CATH topology
 5FLE X;  1DG4 A;  3I04 A;  3DDF A;  3ZED A;  2X5C A;  1YWM A;  4ILG A;  3ZEF A;  3SBT B;  3B53 X;  3BUB A;  3DPQ A;  3DX1 A;  1UPX A;  4H6H A;  3BLB A;  3O3O B;  3CAZ A;  2BPR A;  2OP6 A;  2F1B A;  4EZV A;  2EX3 B;  4FM3 A;  1HTY A;  2X3W A;  1ZWW A;  3DDG A;  3EJQ A;  4IM2 A;  1QX1 A;  4UDX X;  4BNE A;  3D4Z A;  3EJT A;  2OBL A;  4F01 A;  3KAV A;  2EFK A;  3QWE A;  2YL6 A;  1HWW A;  4ILH B;  3CZN A;  4WPE A;  2GA9 D;  4AZH A;  3DPP A;  2Z0V A;  3BVT A;  1I4T A;  2WYH A;  1JQK A;  2LM0 A;  3BUQ A;  3HAJ A;  2YL9 A;  3CKD A;  3BVU A;  4EZZ A;  3DOB A;  3DX3 A;  2Z0N A;  3BVV A;  3O3M B;  4D8J A;  1R5E A;  3SYV A;  4MQD A;  3QNI A;  2RT6 A;  2F7P A;  2X3X A;  4ATM A;  4R5J A;  2FIC A;  3EJS A;  3H0X A;  4IWO A;  4DYL A;  3KAW A;  5TKY A;  4E3C A;  3D2E A;  3HAI A;  4JNF A;  1E2U A;  2X3V A;  1X04 A;  2MI7 A;  4AZC A;  4JLC A;  4IWQ A;  3B52 X;  4AVM A;  4F00 A;  4R5K A;  3EJR A;  3OK8 A;  2F7R A;  2ND1 A;  3T4A G;  3T46 A;  3L3P A;  3L3O M;  4AZC B;  2Z0O A;  4AZ5 A;  3LLL A;  3GI7 A;  3SOG A;  3I01 A;  4ILI A;  4AZ6 A;  3LMF A;  2OZN B;  4AZB A;  3BUD A;  3PLT A;  3KDR A;  4EZN A;  2F7Q A;  3OHX M;  5KBP A;  1TQT A;  1SU7 A;  3QA8 A;  1O7D B;  2D1L A;  4AZI A;  2YKT A;  1URU A;  2ZXQ A;  2OW7 A;  3VKH A;  4HY9 A;  4EZX A;  1QWU A;  1SU8 A;  3EJP A;  4EZR A;  4NQI A;  1GN9 A;  2F7O A;  2YL5 A;  2OBM A;  2O0I 1;  7HSC A;  2JNS A;  3BUP A;  3FD9 A;  4M0M A;  3B51 X;  1DKY A;  2ND0 A;  4JWE A;  1I4L A;  1Q5L A;  3D2F A;  3N8E A;  4WV7 A;  4HYB A;  4EZQ A;  4I43 A;  1YUW A;  1LQ7 A;  3RPM A;  4EZP A;  1SUF A;  3O3N B;  4EZS A;  1SU6 A;  3D4Y A;  3ER9 B;  1QWN A;  4R5I A;  3T48 A;  4H8S A;  1U00 A;  2PMR A;  2ELB A;  1MJG A;  2V7Y A;  3DPO A;  2F1A A;  3M3W A;  4B9Q A;  4NPH A;  4EZY A;  1R34 A;  5C5B A;  2GAF D;  3LVT A;  1TQU A;  4JWC A;  2GF4 A;  4PO2 A;  3D51 A;  3VEA A;  3F7W A;  1I4D A;  4IM0 A;  2YLL A;  3C7N A;  4FZS A;  5C5B B;  1GNL A;  2RAI A;  4JL9 A;  2PY6 A;  2YIV X;  2RAJ A;  1PS3 A;  4JWI A;  2QXL A;  1I49 A;  4IW0 A;  3BVW A;  4WPC A;  2NCZ A;  1OA1 A;  3C7N B;  2OW6 A;  2KHO A;  3G9G A;  4EZW A;  2YIA A;  2ALW A;  1ZYL A;  4WV5 A;  3A98 A;  2LXY A;  3DX0 A;  3DX2 A;  1CKR A;  2N3K A;  4IM3 A;  4JWD A;  5FIG A;  1HXK A;  2JNK A;  3RV1 A;  4IWP A;  3ERC C;  3D52 A;  3CV5 A;  4JN4 A;  2F18 A;  3VEB A;  4HR1 A;  2Z8Y A;  1E1D A;  4DCN C;  4I1Q A;  4AKV A;  3Q84 A;  1W9M A;  2FYV A;  5E84 A;  1GNT A;  2WIN M;  2YI8 A;  2QFF A;  3EJU A;  4HR1 B;  3I39 X;  2V0O A;  2QKW A;  1OAO A;  4FL9 A;  3RV0 A;  3BUI A;  4AZG A;  4KIK A;  3DQG A;  2EWF A;  2EFL A;  3CVR A;  2YI9 A;  3CZS A;  3QE6 A;  4R5L A;  4AZ7 A;  1O7D C;  1Y2O A;  3SBS A;  4E81 A;  4FZP A;  2YIB A;  4R5G A;  3UIT A;  4G6Q A;  1DKX A;  3T49 A;  3I2W A;  4NSW A;  4KIK B;  3QNJ A;  2RAK A;  2OO2 A;  1WDZ A;  2C08 A;  1OA0 A;  3DX4 A;  1E9V A;  3Q0K A;  2Q12 A;  1TQW A;  2YLA A;  4FZO A;  4UDY X;  3ACO A;  4EZT A;  1R33 A;  2D4C A;  1TQV A;  3BVX A;  3ER8 C;  3DYT A;  1TQS A;  3OWG A;  2YL8 A;  3T47 A;  3HAH A;  3D50 A;  2WYI A;  1X03 A;  4H6I A;  2Q13 A;  1DKZ A;  3ABH A;  1BPR A;  4EZO A;  4JNE A;  4EZU A; 
#chains in the Genus database with same CATH homology
 1DKY A;  2ND0 A;  5FLE X;  2N3K A;  4IM3 A;  1DG4 A;  3I04 A;  4JWD A;  4JWE A;  5FIG A;  3H0X A;  1Q5L A;  4IWO A;  3D2F A;  3ZED A;  3RV1 A;  3N8E A;  4WV7 A;  4HYB A;  4EZQ A;  4IWP A;  3ERC C;  2X5C A;  4I43 A;  1YUW A;  3KAW A;  4EZP A;  4JN4 A;  1SUF A;  5TKY A;  4ILG A;  3VEB A;  3ZEF A;  4HR1 A;  4E3C A;  3O3N B;  3D2E A;  1SU6 A;  2Z8Y A;  3B53 X;  4EZS A;  3SBT B;  4JNF A;  1E2U A;  1E1D A;  3DPQ A;  4JLC A;  4IWQ A;  1UPX A;  3B52 X;  4H6H A;  3O3O B;  3ER9 B;  4R5I A;  3T48 A;  2BPR A;  2OP6 A;  4F00 A;  1W9M A;  5E84 A;  1U00 A;  2EX3 B;  4EZV A;  4FM3 A;  4R5K A;  1MJG A;  1GNT A;  2WIN M;  2YI8 A;  2V7Y A;  2QFF A;  3DPO A;  4HR1 B;  3I39 X;  2ND1 A;  3T4A G;  4B9Q A;  3T46 A;  4NPH A;  1OAO A;  4FL9 A;  4IM2 A;  3RV0 A;  3L3O M;  4UDX X;  4EZY A;  3GI7 A;  2OBL A;  4F01 A;  4KIK A;  3KAV A;  3I01 A;  2GAF D;  3DQG A;  2EWF A;  4ILH B;  4ILI A;  2GA9 D;  3LMF A;  2YI9 A;  4JWC A;  4R5L A;  3DPP A;  4PO2 A;  4E81 A;  3SBS A;  3KDR A;  2YIB A;  3VEA A;  4R5G A;  3UIT A;  4G6Q A;  1DKX A;  3F7W A;  3OHX M;  3T49 A;  4EZN A;  4KIK B;  3QNJ A;  4IM0 A;  1SU7 A;  3C7N A;  1OA0 A;  3QA8 A;  1E9V A;  1GNL A;  1JQK A;  4JL9 A;  2LM0 A;  2PY6 A;  2YIV X;  4UDY X;  4EZT A;  4EZZ A;  3VKH A;  4HY9 A;  4EZX A;  4JWI A;  3DOB A;  2QXL A;  1SU8 A;  4EZR A;  4IW0 A;  2NCZ A;  3ER8 C;  1OA1 A;  3C7N B;  3OWG A;  1GN9 A;  3T47 A;  3O3M B;  4D8J A;  2KHO A;  4EZW A;  2YIA A;  2OBM A;  4MQD A;  1ZYL A;  4H6I A;  2RT6 A;  4WV5 A;  7HSC A;  3A98 A;  1DKZ A;  2JNS A;  3FD9 A;  4R5J A;  1BPR A;  1CKR A;  4EZO A;  4M0M A;  4JNE A;  4EZU A;  3B51 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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