4R5LA

Crystal structure of the dnak c-terminus (dnak-sbd-c)
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
225
structure length
222
Chain Sequence
HHHHIEGRVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKALNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone
molecule keywords Chaperone protein DnaK
publication title Structural Basis for the Inhibition of HSP70 and DnaK Chaperones by Small-Molecule Targeting of a C-Terminal Allosteric Pocket.
pubmed doi rcsb
source organism Escherichia coli
total genus 61
structure length 222
sequence length 225
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-08-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4r5lA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4r5lA01
1DKXA 3T47A 1CKRA 2BPRA 4FL9A 4R5LA 4EZPA 4EZXA 2KHOA 3C7NB 5TKYA 3L3OM 4EZTA 4JWCA 4JWDA 4JWEA 4EZNA 4EZOA 4WV5A 1Q5LA 7HSCA 4F01A 3QNJA 3DOBA 3DPQA 4H6HA 5E84A 1YUWA 1DKZA 4EZSA 4R5JA 1DG4A 1DKYA 3T48A 2V7YA 4E81A 4EZWA 4PO2A 4EZQA 4HY9A 4H6IA 2QXLA 4F00A 4EZRA 3D2EA 3T4AG 3DQGA 2OP6A 3DPPA 4R5KA 4JNFA 4R5GA 3D2FA 2WINM 4EZVA 2QFFA 1BPRA 4JN4A 4B9QA 3H0XA 3C7NA 3N8EA 4JNEA 4EZZA 3DPOA 3T49A 4JWIA 3T46A 4WV7A 4HYBA 3OHXM 4EZYA 4EZUA 4R5IA 1U00A
chains in the Genus database with same CATH superfamily
5KBPA 2OZNB 5C5BA 1YWMA 3OWGA 2NCZA 1OA0A 4IM0A 2OBMA 4KIKB 2EWFA 2WYIA 3T49A 3QA8A 3OHXM 4EZYA 1CKRA 4ILIA 4R5LA 5FLEX 1HXKA 3C7NB 3CZSA 4JWDA 1OAOA 3HAJA 1QWNA 4WPCA 2YI8A 3CKDA 4ILHB 2Z8YA 2YKTA 1SUFA 3D52A 3EJQA 4PO2A 3D51A 3CVRA 4F00A 4NPHA 2X3XA 2YLLA 1UPXA 2WINM 2RAKA 2GA9D 3DX4A 4DCNC 4AZCA 3O3MB 2YIBA 3FD9A 4UDYX 1O7DC 2O0I1 3BUBA 2C08A 2F18A 1TQUA 1GN9A 1TQVA 4R5KA 2Q13A 3D2FA 3QNIA 4NQIA 3T46A 4FZOA 4R5IA 4IW0A 3BUIA 3DX2A 3UITA 4ATMA 4EZXA 3SBTB 2YL9A 3O3OB 4JWCA 2D1LA 2X3VA 3VKHA 2OBLA 4AZCB 2RAJA 1R34A 2YL6A 3RV1A 4AVMA 3I2WA 3BUPA 4NSWA 1ZWWA 2MI7A 1BPRA 1QWUA 2LM0A 2JNKA 3QNJA 4H6HA 3Q84A 2EFLA 4HY9A 1X04A 1PS3A 3O3NB 3DPPA 2F7OA 4B9QA 4M0MA 4JL9A 1LQ7A 2GF4A 1R5EA 4JWEA 3D50A 2V7YA 3CAZA 3BUDA 1R33A 4R5GA 1E9VA 3N8EA 2F7QA 3KAWA 3I04A 1DKXA 1HWWA 3T47A 2KHOA 3RV0A 4EZTA 4EZNA 3B51X 4AKVA 4AZIA 4E81A 2YI9A 3CZNA 3BVXA 3D2EA 2JNSA 2F7RA 4AZBA 1E1DA 2WYHA 5TKYA 2Q12A 2FYVA 3L3OM 3D4YA 3DOBA 4UDXX 1YUWA 4ILGA 1I4DA 1SU7A 3DX3A 1TQTA 1Y2OA 3M3WA 3SYVA 1I4LA 3DQGA 1I4TA 3DDGA 4EZZA 3B52X 3DX1A 4WPEA 4AZ7A 4EZPA 3ZEDA 2PY6A 4JLCA 1DG4A 4AZGA 2FICA 2PMRA 2YLAA 2ELBA 3BUQA 4IM3A 1W9MA 1URUA 3I39X 2BPRA 2ND1A 3LMFA 3DX0A 3KAVA 1MJGA 2LXYA 3ERCC 4F01A 3DPQA 3EJSA 3PLTA 4R5JA 3QE6A 2EFKA 4EZQA 3VEAA 1ZYLA 2OW7A 2OP6A 3SBSA 3ACOA 3ER9B 2YL5A 3SOGA 3EJUA 3LLLA 2OO2A 3ER8C 4HR1A 4E3CA 2X3WA 2RT6A 3CV5A 7HSCA 3LVTA 4IWPA 4D8JA 2V0OA 3RPMA 1WDZA 3BVUA 4EZRA 3ABHA 2N3KA 2OW6A 3T4AG 3DDFA 3H0XA 4AZ5A 4JNEA 3DPOA 4G6QA 4WV7A 4FL9A 3F7WA 3ZEFA 1HTYA 2ALWA 3BVVA 2ZXQA 1GNTA 4FZPA 1X03A 3EJRA 1DKZA 4HR1B 1SU6A 3GI7A 2F1BA 4H6IA 3QWEA 4FM3A 3L3PA 2QFFA 4JN4A 1E2UA 3KDRA 4JWIA 2YL8A 1TQSA 2QKWA 2F7PA 4FZSA 3HAHA 5E84A 5C5BB 2QXLA 1JQKA 3BVWA 2F1AA 4HYBA 3EJPA 3HAIA 4I1QA 4I43A 4AZHA 3G9GA 1QX1A 4MQDA 2ND0A 1TQWA 3A98A 4WV5A 3B53X 4IWQA 4IM2A 3VEBA 4EZUA 1GNLA 5FIGA 4BNEA 4EZOA 1Q5LA 3T48A 2EX3B 3BVTA 4AZ6A 2X5CA 1I49A 2Z0VA 2GAFD 2D4CA 4DYLA 4EZVA 1OA1A 2YIVX 3I01A 2RAIA 3OK8A 3BLBA 2Z0NA 3D4ZA 1SU8A 4EZSA 1DKYA 4KIKA 4EZWA 4IWOA 3Q0KA 3EJTA 3DYTA 4H8SA 4JNFA 1O7DB 3C7NA 2Z0OA 2YIAA 1U00A
chains in the Genus database with same CATH topology
4EZPA 2LM0A 3ZEDA 2PY6A 4JLCA 3QNJA 3OWGA 4H6HA 2NCZA 5E84A 1DG4A 1OA0A 4HY9A 2QXLA 1JQKA 4IM0A 2OBMA 3O3NB 3DPPA 4KIKB 4IM3A 2EWFA 1W9MA 3T49A 3QA8A 4HYBA 3OHXM 4B9QA 4EZYA 4M0MA 4JL9A 1CKRA 3I39X 2BPRA 4R5LA 4ILIA 2ND1A 5FLEX 3C7NB 3LMFA 3KAVA 1MJGA 4JWDA 4JWEA 3ERCC 1OAOA 4F01A 4ILHB 2YI8A 3DPQA 2Z8YA 4I43A 4R5JA 1SUFA 2V7YA 4MQDA 4PO2A 4EZQA 3VEAA 4F00A 1ZYLA 2ND0A 4NPHA 2OP6A 3A98A 3SBSA 4R5GA 1UPXA 1E9VA 3ER9B 2WINM 4WV5A 3N8EA 3B53X 4IWQA 3KAWA 2GA9D 4IM2A 3I04A 3VEBA 4EZUA 1DKXA 3T47A 3O3MB 1GNLA 2KHOA 2YIBA 4HR1A 4E3CA 3ER8C 3RV0A 4EZTA 2RT6A 3FD9A 5FIGA 4EZNA 4EZOA 1Q5LA 7HSCA 3B51X 4IWPA 4UDYX 4D8JA 3T48A 4E81A 2EX3B 2X5CA 1GN9A 2YI9A 4EZRA 2GAFD 3D2EA 2N3KA 2JNSA 3T4AG 4R5KA 3D2FA 4EZVA 3H0XA 4JNEA 4G6QA 3DPOA 3T46A 4WV7A 1OA1A 1E1DA 4R5IA 2YIVX 4FL9A 4IW0A 3I01A 3F7WA 3UITA 4EZXA 3ZEFA 3SBTB 5TKYA 3L3OM 3O3OB 4JWCA 1GNTA 3DOBA 1SU8A 3VKHA 4UDXX 1YUWA 4ILGA 1DKZA 1SU7A 2OBLA 4EZSA 1DKYA 4KIKA 4HR1B 1SU6A 4EZWA 4IWOA 3GI7A 3RV1A 4H6IA 4FM3A 3DQGA 4JNFA 2QFFA 1BPRA 4JN4A 3C7NA 1E2UA 2YIAA 4EZZA 3B52X 3KDRA 4JWIA 1U00A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DKX A;  3T47 A;  1CKR A;  2BPR A;  4FL9 A;  4R5L A;  4EZP A;  4EZX A;  2KHO A;  3C7N B;  5TKY A;  3L3O M;  4EZT A;  4JWC A;  4JWD A;  4JWE A;  4EZN A;  4EZO A;  4WV5 A;  1Q5L A;  7HSC A;  4F01 A;  3QNJ A;  3DOB A;  3DPQ A;  4H6H A;  5E84 A;  1YUW A;  1DKZ A;  4EZS A;  4R5J A;  1DG4 A;  1DKY A;  3T48 A;  2V7Y A;  4E81 A;  4EZW A;  4PO2 A;  4EZQ A;  4HY9 A;  4H6I A;  2QXL A;  4F00 A;  4EZR A;  3D2E A;  3T4A G;  3DQG A;  2OP6 A;  3DPP A;  4R5K A;  4JNF A;  4R5G A;  3D2F A;  2WIN M;  4EZV A;  2QFF A;  1BPR A;  4JN4 A;  4B9Q A;  3H0X A;  3C7N A;  3N8E A;  4JNE A;  4EZZ A;  3DPO A;  3T49 A;  4JWI A;  3T46 A;  4WV7 A;  4HYB A;  3OHX M;  4EZY A;  4EZU A;  4R5I A;  1U00 A; 
#chains in the Genus database with same CATH topology
 5KBP A;  2OZN B;  5C5B A;  1YWM A;  3OWG A;  2NCZ A;  1OA0 A;  4IM0 A;  2OBM A;  4KIK B;  2EWF A;  2WYI A;  3T49 A;  3QA8 A;  3OHX M;  4EZY A;  1CKR A;  4ILI A;  4R5L A;  5FLE X;  1HXK A;  3C7N B;  3CZS A;  4JWD A;  1OAO A;  3HAJ A;  1QWN A;  4WPC A;  2YI8 A;  3CKD A;  4ILH B;  2Z8Y A;  2YKT A;  1SUF A;  3D52 A;  3EJQ A;  4PO2 A;  3D51 A;  3CVR A;  4F00 A;  4NPH A;  2X3X A;  2YLL A;  1UPX A;  2WIN M;  2RAK A;  2GA9 D;  3DX4 A;  4DCN C;  4AZC A;  3O3M B;  2YIB A;  3FD9 A;  4UDY X;  1O7D C;  2O0I 1;  3BUB A;  2C08 A;  2F18 A;  1TQU A;  1GN9 A;  1TQV A;  4R5K A;  2Q13 A;  3D2F A;  3QNI A;  4NQI A;  3T46 A;  4FZO A;  4R5I A;  4IW0 A;  3BUI A;  3DX2 A;  3UIT A;  4ATM A;  4EZX A;  3SBT B;  2YL9 A;  3O3O B;  4JWC A;  2D1L A;  2X3V A;  3VKH A;  2OBL A;  4AZC B;  2RAJ A;  1R34 A;  2YL6 A;  3RV1 A;  4AVM A;  3I2W A;  3BUP A;  4NSW A;  1ZWW A;  2MI7 A;  1BPR A;  1QWU A;  2LM0 A;  2JNK A;  3QNJ A;  4H6H A;  3Q84 A;  2EFL A;  4HY9 A;  1X04 A;  1PS3 A;  3O3N B;  3DPP A;  2F7O A;  4B9Q A;  4M0M A;  4JL9 A;  1LQ7 A;  2GF4 A;  1R5E A;  4JWE A;  3D50 A;  2V7Y A;  3CAZ A;  3BUD A;  1R33 A;  4R5G A;  1E9V A;  3N8E A;  2F7Q A;  3KAW A;  3I04 A;  1DKX A;  1HWW A;  3T47 A;  2KHO A;  3RV0 A;  4EZT A;  4EZN A;  3B51 X;  4AKV A;  4AZI A;  4E81 A;  2YI9 A;  3CZN A;  3BVX A;  3D2E A;  2JNS A;  2F7R A;  4AZB A;  1E1D A;  2WYH A;  5TKY A;  2Q12 A;  2FYV A;  3L3O M;  3D4Y A;  3DOB A;  4UDX X;  1YUW A;  4ILG A;  1I4D A;  1SU7 A;  3DX3 A;  1TQT A;  1Y2O A;  3M3W A;  3SYV A;  1I4L A;  3DQG A;  1I4T A;  3DDG A;  4EZZ A;  3B52 X;  3DX1 A;  4WPE A;  4AZ7 A;  4EZP A;  3ZED A;  2PY6 A;  4JLC A;  1DG4 A;  4AZG A;  2FIC A;  2PMR A;  2YLA A;  2ELB A;  3BUQ A;  4IM3 A;  1W9M A;  1URU A;  3I39 X;  2BPR A;  2ND1 A;  3LMF A;  3DX0 A;  3KAV A;  1MJG A;  2LXY A;  3ERC C;  4F01 A;  3DPQ A;  3EJS A;  3PLT A;  4R5J A;  3QE6 A;  2EFK A;  4EZQ A;  3VEA A;  1ZYL A;  2OW7 A;  2OP6 A;  3SBS A;  3ACO A;  3ER9 B;  2YL5 A;  3SOG A;  3EJU A;  3LLL A;  2OO2 A;  3ER8 C;  4HR1 A;  4E3C A;  2X3W A;  2RT6 A;  3CV5 A;  7HSC A;  3LVT A;  4IWP A;  4D8J A;  2V0O A;  3RPM A;  1WDZ A;  3BVU A;  4EZR A;  3ABH A;  2N3K A;  2OW6 A;  3T4A G;  3DDF A;  3H0X A;  4AZ5 A;  4JNE A;  3DPO A;  4G6Q A;  4WV7 A;  4FL9 A;  3F7W A;  3ZEF A;  1HTY A;  2ALW A;  3BVV A;  2ZXQ A;  1GNT A;  4FZP A;  1X03 A;  3EJR A;  1DKZ A;  4HR1 B;  1SU6 A;  3GI7 A;  2F1B A;  4H6I A;  3QWE A;  4FM3 A;  3L3P A;  2QFF A;  4JN4 A;  1E2U A;  3KDR A;  4JWI A;  2YL8 A;  1TQS A;  2QKW A;  2F7P A;  4FZS A;  3HAH A;  5E84 A;  5C5B B;  2QXL A;  1JQK A;  3BVW A;  2F1A A;  4HYB A;  3EJP A;  3HAI A;  4I1Q A;  4I43 A;  4AZH A;  3G9G A;  1QX1 A;  4MQD A;  2ND0 A;  1TQW A;  3A98 A;  4WV5 A;  3B53 X;  4IWQ A;  4IM2 A;  3VEB A;  4EZU A;  1GNL A;  5FIG A;  4BNE A;  4EZO A;  1Q5L A;  3T48 A;  2EX3 B;  3BVT A;  4AZ6 A;  2X5C A;  1I49 A;  2Z0V A;  2GAF D;  2D4C A;  4DYL A;  4EZV A;  1OA1 A;  2YIV X;  3I01 A;  2RAI A;  3OK8 A;  3BLB A;  2Z0N A;  3D4Z A;  1SU8 A;  4EZS A;  1DKY A;  4KIK A;  4EZW A;  4IWO A;  3Q0K A;  3EJT A;  3DYT A;  4H8S A;  4JNF A;  1O7D B;  3C7N A;  2Z0O A;  2YIA A;  1U00 A; 
#chains in the Genus database with same CATH homology
 4EZP A;  2LM0 A;  3ZED A;  2PY6 A;  4JLC A;  3QNJ A;  3OWG A;  4H6H A;  2NCZ A;  5E84 A;  1DG4 A;  1OA0 A;  4HY9 A;  2QXL A;  1JQK A;  4IM0 A;  2OBM A;  3O3N B;  3DPP A;  4KIK B;  4IM3 A;  2EWF A;  1W9M A;  3T49 A;  3QA8 A;  4HYB A;  3OHX M;  4B9Q A;  4EZY A;  4M0M A;  4JL9 A;  1CKR A;  3I39 X;  2BPR A;  4R5L A;  4ILI A;  2ND1 A;  5FLE X;  3C7N B;  3LMF A;  3KAV A;  1MJG A;  4JWD A;  4JWE A;  3ERC C;  1OAO A;  4F01 A;  4ILH B;  2YI8 A;  3DPQ A;  2Z8Y A;  4I43 A;  4R5J A;  1SUF A;  2V7Y A;  4MQD A;  4PO2 A;  4EZQ A;  3VEA A;  4F00 A;  1ZYL A;  2ND0 A;  4NPH A;  2OP6 A;  3A98 A;  3SBS A;  4R5G A;  1UPX A;  1E9V A;  3ER9 B;  2WIN M;  4WV5 A;  3N8E A;  3B53 X;  4IWQ A;  3KAW A;  2GA9 D;  4IM2 A;  3I04 A;  3VEB A;  4EZU A;  1DKX A;  3T47 A;  3O3M B;  1GNL A;  2KHO A;  2YIB A;  4HR1 A;  4E3C A;  3ER8 C;  3RV0 A;  4EZT A;  2RT6 A;  3FD9 A;  5FIG A;  4EZN A;  4EZO A;  1Q5L A;  7HSC A;  3B51 X;  4IWP A;  4UDY X;  4D8J A;  3T48 A;  4E81 A;  2EX3 B;  2X5C A;  1GN9 A;  2YI9 A;  4EZR A;  2GAF D;  3D2E A;  2N3K A;  2JNS A;  3T4A G;  4R5K A;  3D2F A;  4EZV A;  3H0X A;  4JNE A;  4G6Q A;  3DPO A;  3T46 A;  4WV7 A;  1OA1 A;  1E1D A;  4R5I A;  2YIV X;  4FL9 A;  4IW0 A;  3I01 A;  3F7W A;  3UIT A;  4EZX A;  3ZEF A;  3SBT B;  5TKY A;  3L3O M;  3O3O B;  4JWC A;  1GNT A;  3DOB A;  1SU8 A;  3VKH A;  4UDX X;  1YUW A;  4ILG A;  1DKZ A;  1SU7 A;  2OBL A;  4EZS A;  1DKY A;  4KIK A;  4HR1 B;  1SU6 A;  4EZW A;  4IWO A;  3GI7 A;  3RV1 A;  4H6I A;  4FM3 A;  3DQG A;  4JNF A;  2QFF A;  1BPR A;  4JN4 A;  3C7N A;  1E2U A;  2YIA A;  4EZZ A;  3B52 X;  3KDR A;  4JWI A;  1U00 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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