4HYBA

Crystal structure of the substrate binding domain of e.coli dnak in complex with pyrrhocoricin_lyzi (residues 1 to 10)
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
213
structure length
213
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone, peptide binding protein
source organism Escherichia coli
publication title Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK.
pubmed doi rcsb
molecule keywords Chaperone protein DnaK
total genus 62
structure length 213
sequence length 213
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-11-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4hybA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4hybA01
4JWEA 2QFFA 4JN4A 3C7NA 3T48A 1DKYA 4EZOA 4E81A 4F01A 4EZXA 4HY9A 4R5KA 1U00A 3T49A 4F00A 4PO2A 3D2EA 4EZYA 3T47A 4H6HA 3C7NB 3DOBA 2QXLA 4R5GA 4WV5A 4JWCA 3L3OM 1YUWA 2BPRA 4HYBA 2OP6A 5TKYA 4EZZA 2KHOA 4R5JA 2WINM 4EZQA 4EZVA 3D2FA 3H0XA 4H6IA 4R5IA 3N8EA 7HSCA 4B9QA 3QNJA 4EZPA 4EZWA 4EZTA 1BPRA 4EZNA 3T4AG 3T46A 4EZSA 4JNEA 3DPQA 3DQGA 4JWDA 5E84A 4EZRA 1CKRA 1DKXA 4WV7A 4FL9A 4JNFA 3DPOA 4R5LA 4JWIA 3OHXM 1DKZA 4EZUA 2V7YA 1DG4A 1Q5LA 3DPPA
chains in the Genus database with same CATH superfamily
2JNSA 3RV1A 4EZXA 2YL9A 4AZ5A 3D52A 2WINM 1I4LA 3SBTB 1E2UA 1BPRA 4ILHB 1QWNA 3GI7A 4IM3A 3CZSA 3I2WA 1Q5LA 1ZYLA 2D1LA 4E81A 3O3NB 4F00A 2YLLA 2YL6A 4FZOA 4AZCA 5C5BA 2EFKA 3BUDA 2PY6A 1SUFA 4AVMA 3T4AG 4JNFA 1R34A 2NCZA 3DPPA 2GAFD 3VKHA 3QA8A 4E3CA 4AZ7A 3EJUA 3C7NB 2EX3B 2OBMA 5FLEX 4EZZA 1SU7A 3DX3A 4JL9A 2GF4A 4DCNC 4EZNA 2Z8YA 3HAHA 2D4CA 4ILGA 1E1DA 2F1BA 3DPOA 3DYTA 3Q84A 3DQGA 4HR1B 1OAOA 1OA1A 4EZOA 2JNKA 3VEAA 3ERCC 3CV5A 2YL5A 2QXLA 4R5GA 3D2FA 1I4TA 2WYIA 1SU6A 3ER9B 1TQVA 2OBLA 1CKRA 1ZWWA 4M0MA 1WDZA 3BUIA 3D51A 4IM0A 3I39X 1X04A 1W9MA 3EJRA 4AZGA 3ZEDA 2OP6A 4KIKB 5TKYA 2Q13A 4EZQA 3SBSA 4EZPA 4IWOA 1DG4A 4EZUA 4FZPA 3D4YA 4F01A 1U00A 2EFLA 1I49A 4IWQA 3O3MB 3HAJA 1GNTA 3DPQA 4JWDA 3D50A 3KAWA 4NPHA 3BUBA 2QKWA 4WPCA 3PLTA 1HTYA 3KDRA 3DOBA 2F7RA 2YLAA 4AZIA 3OWGA 3N8EA 3QE6A 3QNJA 4AZHA 2ND1A 4JNEA 4WV7A 4FL9A 2V7YA 2PMRA 4IM2A 3CAZA 2MI7A 1URUA 2ND0A 4WV5A 4HYBA 3I04A 2FICA 7HSCA 4AZCB 5C5BB 3ACOA 3CVRA 3CZNA 4WPEA 1TQTA 3Q0KA 4H8SA 3BUPA 3ABHA 3EJQA 4FM3A 3T49A 3M3WA 1R33A 1QWUA 3DDFA 2EWFA 3DX0A 1SU8A 2Z0OA 4EZSA 2YKTA 2F7QA 4I1QA 2N3KA 2OO2A 4AZ6A 3EJPA 1R5EA 2LM0A 4R5KA 4MQDA 3D2EA 3A98A 4JWCA 1YUWA 2ALWA 5FIGA 1E9VA 1TQSA 4EZTA 5E84A 3O3OB 4UDXX 4JLCA 3D4ZA 1HWWA 2GA9D 4HY9A 3B53X 4EZYA 2ELBA 2X3WA 2RAJA 1GN9A 4R5JA 1HXKA 3ZEFA 2RAKA 2WYHA 4ILIA 1O7DC 3DX1A 4AZBA 2F18A 2FYVA 3LMFA 2ZXQA 3BVUA 3OK8A 3OHXM 1DKZA 2OW7A 2QFFA 4JN4A 3LVTA 3T47A 3DX2A 3I01A 1LQ7A 2X5CA 4EZVA 2YI8A 3UITA 1OA0A 4B9QA 1Y2OA 2YIBA 4DYLA 2YIVX 3BVVA 4EZRA 1UPXA 4G6QA 4FZSA 3C7NA 1PS3A 1DKYA 4H6HA 3L3PA 2C08A 3QWEA 2OZNB 3BVTA 2O0I1 3EJSA 1JQKA 4H6IA 1GNLA 2YIAA 1DKXA 2F7PA 4HR1A 4NQIA 3DDGA 4R5LA 1X03A 2YI9A 1YWMA 3SYVA 1TQUA 3CKDA 3G9GA 4NSWA 3L3OM 3BUQA 2BPRA 1MJGA 3DX4A 1O7DB 1QX1A 3EJTA 4I43A 1I4DA 3RPMA 2V0OA 2Z0VA 2F7OA 3T46A 4BNEA 3KAVA 4JWIA 3BVXA 2X3VA 4JWEA 3T48A 3VEBA 3FD9A 4ATMA 2OW6A 4KIKA 4PO2A 5KBPA 3BLBA 2Z0NA 3H0XA 4R5IA 2Q12A 3F7WA 4EZWA 4IW0A 1TQWA 3B52X 2LXYA 4AKVA 2YL8A 3QNIA 3SOGA 2X3XA 2RT6A 3BVWA 3RV0A 2F1AA 2KHOA 3LLLA 3HAIA 4D8JA 3B51X 3ER8C 2RAIA 4IWPA 4UDYX
chains in the Genus database with same CATH topology
3C7NA 1DKYA 2JNSA 3RV1A 4EZXA 1W9MA 3T49A 4FM3A 4H6HA 3ZEDA 2OP6A 4KIKB 5TKYA 2WINM 2EWFA 4EZQA 1JQKA 3SBSA 4H6IA 1SU8A 3SBTB 4EZPA 1E2UA 1BPRA 4IWOA 4EZSA 4ILHB 1GNLA 2YIAA 1DKXA 3GI7A 4HR1A 4R5LA 2YI9A 4IM3A 1DG4A 2N3KA 4EZUA 1Q5LA 1ZYLA 4F01A 4E81A 2LM0A 1U00A 3O3NB 4R5KA 4F00A 3D2EA 4MQDA 3A98A 3L3OM 4IWQA 4JWCA 1YUWA 1MJGA 2BPRA 5FIGA 1E9VA 4I43A 2PY6A 3O3MB 1SUFA 1GNTA 4EZTA 3T4AG 3T46A 3DPQA 4JWDA 3O3OB 5E84A 4JNFA 3KAVA 3KAWA 4JWIA 4UDXX 4JLCA 3DPPA 2NCZA 2GAFD 4NPHA 3VKHA 4JWEA 3T48A 3VEBA 3QA8A 3FD9A 4E3CA 2GA9D 4HY9A 4KIKA 3B53X 4PO2A 4EZYA 3C7NB 3KDRA 3DOBA 2EX3B 2OBMA 1GN9A 5FLEX 4EZZA 4R5JA 1SU7A 3H0XA 3ZEFA 3OWGA 4R5IA 3N8EA 4JL9A 4ILIA 3QNJA 3F7WA 4EZWA 4IW0A 2ND1A 4EZNA 2Z8YA 4JNEA 3LMFA 4ILGA 1E1DA 4FL9A 3B52X 4WV7A 3DPOA 3OHXM 1DKZA 2V7YA 3DQGA 4IM2A 4HR1B 1OAOA 2QFFA 4JN4A 1OA1A 4EZOA 3VEAA 3ERCC 2ND0A 2RT6A 3T47A 3I01A 2QXLA 4R5GA 3RV0A 4WV5A 2X5CA 4HYBA 2KHOA 4EZVA 2YI8A 3D2FA 3I04A 3UITA 7HSCA 1OA0A 4B9QA 2YIBA 1SU6A 3ER9B 4D8JA 2YIVX 3B51X 3ER8C 2OBLA 4EZRA 4IWPA 1CKRA 4M0MA 4UDYX 1UPXA 4IM0A 4G6QA 3I39X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JWE A;  2QFF A;  4JN4 A;  3C7N A;  3T48 A;  1DKY A;  4EZO A;  4E81 A;  4F01 A;  4EZX A;  4HY9 A;  4R5K A;  1U00 A;  3T49 A;  4F00 A;  4PO2 A;  3D2E A;  4EZY A;  3T47 A;  4H6H A;  3C7N B;  3DOB A;  2QXL A;  4R5G A;  4WV5 A;  4JWC A;  3L3O M;  1YUW A;  2BPR A;  4HYB A;  2OP6 A;  5TKY A;  4EZZ A;  2KHO A;  4R5J A;  2WIN M;  4EZQ A;  4EZV A;  3D2F A;  3H0X A;  4H6I A;  4R5I A;  3N8E A;  7HSC A;  4B9Q A;  3QNJ A;  4EZP A;  4EZW A;  4EZT A;  1BPR A;  4EZN A;  3T4A G;  3T46 A;  4EZS A;  4JNE A;  3DPQ A;  3DQG A;  4JWD A;  5E84 A;  4EZR A;  1CKR A;  1DKX A;  4WV7 A;  4FL9 A;  4JNF A;  3DPO A;  4R5L A;  4JWI A;  3OHX M;  1DKZ A;  4EZU A;  2V7Y A;  1DG4 A;  1Q5L A;  3DPP A; 
#chains in the Genus database with same CATH topology
 2JNS A;  3RV1 A;  4EZX A;  2YL9 A;  4AZ5 A;  3D52 A;  2WIN M;  1I4L A;  3SBT B;  1E2U A;  1BPR A;  4ILH B;  1QWN A;  3GI7 A;  4IM3 A;  3CZS A;  3I2W A;  1Q5L A;  1ZYL A;  2D1L A;  4E81 A;  3O3N B;  4F00 A;  2YLL A;  2YL6 A;  4FZO A;  4AZC A;  5C5B A;  2EFK A;  3BUD A;  2PY6 A;  1SUF A;  4AVM A;  3T4A G;  4JNF A;  1R34 A;  2NCZ A;  3DPP A;  2GAF D;  3VKH A;  3QA8 A;  4E3C A;  4AZ7 A;  3EJU A;  3C7N B;  2EX3 B;  2OBM A;  5FLE X;  4EZZ A;  1SU7 A;  3DX3 A;  4JL9 A;  2GF4 A;  4DCN C;  4EZN A;  2Z8Y A;  3HAH A;  2D4C A;  4ILG A;  1E1D A;  2F1B A;  3DPO A;  3DYT A;  3Q84 A;  3DQG A;  4HR1 B;  1OAO A;  1OA1 A;  4EZO A;  2JNK A;  3VEA A;  3ERC C;  3CV5 A;  2YL5 A;  2QXL A;  4R5G A;  3D2F A;  1I4T A;  2WYI A;  1SU6 A;  3ER9 B;  1TQV A;  2OBL A;  1CKR A;  1ZWW A;  4M0M A;  1WDZ A;  3BUI A;  3D51 A;  4IM0 A;  3I39 X;  1X04 A;  1W9M A;  3EJR A;  4AZG A;  3ZED A;  2OP6 A;  4KIK B;  5TKY A;  2Q13 A;  4EZQ A;  3SBS A;  4EZP A;  4IWO A;  1DG4 A;  4EZU A;  4FZP A;  3D4Y A;  4F01 A;  1U00 A;  2EFL A;  1I49 A;  4IWQ A;  3O3M B;  3HAJ A;  1GNT A;  3DPQ A;  4JWD A;  3D50 A;  3KAW A;  4NPH A;  3BUB A;  2QKW A;  4WPC A;  3PLT A;  1HTY A;  3KDR A;  3DOB A;  2F7R A;  2YLA A;  4AZI A;  3OWG A;  3N8E A;  3QE6 A;  3QNJ A;  4AZH A;  2ND1 A;  4JNE A;  4WV7 A;  4FL9 A;  2V7Y A;  2PMR A;  4IM2 A;  3CAZ A;  2MI7 A;  1URU A;  2ND0 A;  4WV5 A;  4HYB A;  3I04 A;  2FIC A;  7HSC A;  4AZC B;  5C5B B;  3ACO A;  3CVR A;  3CZN A;  4WPE A;  1TQT A;  3Q0K A;  4H8S A;  3BUP A;  3ABH A;  3EJQ A;  4FM3 A;  3T49 A;  3M3W A;  1R33 A;  1QWU A;  3DDF A;  2EWF A;  3DX0 A;  1SU8 A;  2Z0O A;  4EZS A;  2YKT A;  2F7Q A;  4I1Q A;  2N3K A;  2OO2 A;  4AZ6 A;  3EJP A;  1R5E A;  2LM0 A;  4R5K A;  4MQD A;  3D2E A;  3A98 A;  4JWC A;  1YUW A;  2ALW A;  5FIG A;  1E9V A;  1TQS A;  4EZT A;  5E84 A;  3O3O B;  4UDX X;  4JLC A;  3D4Z A;  1HWW A;  2GA9 D;  4HY9 A;  3B53 X;  4EZY A;  2ELB A;  2X3W A;  2RAJ A;  1GN9 A;  4R5J A;  1HXK A;  3ZEF A;  2RAK A;  2WYH A;  4ILI A;  1O7D C;  3DX1 A;  4AZB A;  2F18 A;  2FYV A;  3LMF A;  2ZXQ A;  3BVU A;  3OK8 A;  3OHX M;  1DKZ A;  2OW7 A;  2QFF A;  4JN4 A;  3LVT A;  3T47 A;  3DX2 A;  3I01 A;  1LQ7 A;  2X5C A;  4EZV A;  2YI8 A;  3UIT A;  1OA0 A;  4B9Q A;  1Y2O A;  2YIB A;  4DYL A;  2YIV X;  3BVV A;  4EZR A;  1UPX A;  4G6Q A;  4FZS A;  3C7N A;  1PS3 A;  1DKY A;  4H6H A;  3L3P A;  2C08 A;  3QWE A;  2OZN B;  3BVT A;  2O0I 1;  3EJS A;  1JQK A;  4H6I A;  1GNL A;  2YIA A;  1DKX A;  2F7P A;  4HR1 A;  4NQI A;  3DDG A;  4R5L A;  1X03 A;  2YI9 A;  1YWM A;  3SYV A;  1TQU A;  3CKD A;  3G9G A;  4NSW A;  3L3O M;  3BUQ A;  2BPR A;  1MJG A;  3DX4 A;  1O7D B;  1QX1 A;  3EJT A;  4I43 A;  1I4D A;  3RPM A;  2V0O A;  2Z0V A;  2F7O A;  3T46 A;  4BNE A;  3KAV A;  4JWI A;  3BVX A;  2X3V A;  4JWE A;  3T48 A;  3VEB A;  3FD9 A;  4ATM A;  2OW6 A;  4KIK A;  4PO2 A;  5KBP A;  3BLB A;  2Z0N A;  3H0X A;  4R5I A;  2Q12 A;  3F7W A;  4EZW A;  4IW0 A;  1TQW A;  3B52 X;  2LXY A;  4AKV A;  2YL8 A;  3QNI A;  3SOG A;  2X3X A;  2RT6 A;  3BVW A;  3RV0 A;  2F1A A;  2KHO A;  3LLL A;  3HAI A;  4D8J A;  3B51 X;  3ER8 C;  2RAI A;  4IWP A;  4UDY X; 
#chains in the Genus database with same CATH homology
 3C7N A;  1DKY A;  2JNS A;  3RV1 A;  4EZX A;  1W9M A;  3T49 A;  4FM3 A;  4H6H A;  3ZED A;  2OP6 A;  4KIK B;  5TKY A;  2WIN M;  2EWF A;  4EZQ A;  1JQK A;  3SBS A;  4H6I A;  1SU8 A;  3SBT B;  4EZP A;  1E2U A;  1BPR A;  4IWO A;  4EZS A;  4ILH B;  1GNL A;  2YIA A;  1DKX A;  3GI7 A;  4HR1 A;  4R5L A;  2YI9 A;  4IM3 A;  1DG4 A;  2N3K A;  4EZU A;  1Q5L A;  1ZYL A;  4F01 A;  4E81 A;  2LM0 A;  1U00 A;  3O3N B;  4R5K A;  4F00 A;  3D2E A;  4MQD A;  3A98 A;  3L3O M;  4IWQ A;  4JWC A;  1YUW A;  1MJG A;  2BPR A;  5FIG A;  1E9V A;  4I43 A;  2PY6 A;  3O3M B;  1SUF A;  1GNT A;  4EZT A;  3T4A G;  3T46 A;  3DPQ A;  4JWD A;  3O3O B;  5E84 A;  4JNF A;  3KAV A;  3KAW A;  4JWI A;  4UDX X;  4JLC A;  3DPP A;  2NCZ A;  2GAF D;  4NPH A;  3VKH A;  4JWE A;  3T48 A;  3VEB A;  3QA8 A;  3FD9 A;  4E3C A;  2GA9 D;  4HY9 A;  4KIK A;  3B53 X;  4PO2 A;  4EZY A;  3C7N B;  3KDR A;  3DOB A;  2EX3 B;  2OBM A;  1GN9 A;  5FLE X;  4EZZ A;  4R5J A;  1SU7 A;  3H0X A;  3ZEF A;  3OWG A;  4R5I A;  3N8E A;  4JL9 A;  4ILI A;  3QNJ A;  3F7W A;  4EZW A;  4IW0 A;  2ND1 A;  4EZN A;  2Z8Y A;  4JNE A;  3LMF A;  4ILG A;  1E1D A;  4FL9 A;  3B52 X;  4WV7 A;  3DPO A;  3OHX M;  1DKZ A;  2V7Y A;  3DQG A;  4IM2 A;  4HR1 B;  1OAO A;  2QFF A;  4JN4 A;  1OA1 A;  4EZO A;  3VEA A;  3ERC C;  2ND0 A;  2RT6 A;  3T47 A;  3I01 A;  2QXL A;  4R5G A;  3RV0 A;  4WV5 A;  2X5C A;  4HYB A;  2KHO A;  4EZV A;  2YI8 A;  3D2F A;  3I04 A;  3UIT A;  7HSC A;  1OA0 A;  4B9Q A;  2YIB A;  1SU6 A;  3ER9 B;  4D8J A;  2YIV X;  3B51 X;  3ER8 C;  2OBL A;  4EZR A;  4IWP A;  1CKR A;  4M0M A;  4UDY X;  1UPX A;  4IM0 A;  4G6Q A;  3I39 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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