4HYBA

Crystal structure of the substrate binding domain of e.coli dnak in complex with pyrrhocoricin_lyzi (residues 1 to 10)
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
213
structure length
213
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Chaperone protein DnaK
publication title Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Chaperone, peptide binding protein
total genus 62
structure length 213
sequence length 213
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-11-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4hybA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4hybA01
4EZNA 3DOBA 4WV7A 4EZVA 4JWEA 1BPRA 4H6IA 4R5LA 4EZRA 5E84A 4R5KA 4R5GA 3T46A 3DQGA 3DPQA 4WV5A 3L3OM 4EZQA 4F01A 1DG4A 2KHOA 2QFFA 4R5JA 4B9QA 4E81A 7HSCA 3D2FA 4JNFA 2WINM 3QNJA 4EZXA 4EZYA 1DKZA 2V7YA 4HYBA 4EZUA 4JN4A 3OHXM 1DKYA 1U00A 3T4AG 1CKRA 4EZTA 4EZPA 4FL9A 4EZZA 3T49A 4H6HA 3T47A 3T48A 4PO2A 4EZOA 3DPPA 3C7NA 4JNEA 4R5IA 4EZSA 1Q5LA 2BPRA 2OP6A 3D2EA 3C7NB 4F00A 3N8EA 4HY9A 1DKXA 4EZWA 4JWIA 4JWDA 1YUWA 3DPOA 4JWCA 5TKYA 2QXLA 3H0XA
chains in the Genus database with same CATH superfamily
3DOBA 1TQVA 4WV5A 2KHOA 2ELBA 3LLLA 4I43A 4FL9A 3D50A 3B53X 2WYHA 4HY9A 1LQ7A 3SOGA 3Q84A 4E3CA 4R5JA 3D2FA 1O7DC 3QE6A 4IM2A 3BVWA 4H6HA 3CZSA 2RAIA 4PO2A 4R5IA 2F7QA 4F00A 4MQDA 3CKDA 2ZXQA 2YLAA 3KAVA 1QX1A 3LMFA 4H6IA 5FLEX 2F18A 2ND1A 3I2WA 4EZYA 3D4ZA 4AKVA 2V7YA 1X04A 2OO2A 3DX4A 3T47A 1Q5LA 2YLLA 3RV1A 3EJUA 3ZEFA 3DX0A 4AZIA 4IWPA 4I1QA 3EJTA 4R5LA 3T46A 1WDZA 4R5KA 4JNFA 1QWUA 3T4AG 3T49A 2N3KA 2WYIA 2YL9A 3DPPA 3QA8A 2OW7A 4WPEA 3OK8A 4JWIA 1ZWWA 3H0XA 4WV7A 3DDGA 2FICA 3DQGA 2RT6A 3ABHA 3ER9B 3CAZA 3CV5A 4IM3A 3DYTA 3EJPA 1SU7A 4D8JA 1OAOA 2GF4A 4AZ7A 2X5CA 3I39X 2F1AA 1TQSA 2NCZA 4KIKA 3VKHA 4EZVA 3BUQA 1GNTA 3L3OM 2RAJA 1SU6A 7HSCA 2D1LA 2EWFA 1TQUA 4HYBA 3ER8C 4JLCA 2Z0NA 4UDYX 3SYVA 3DX3A 1I4LA 2PY6A 2F7RA 2YIAA 1JQKA 1UPXA 4JL9A 2QXLA 4NQIA 5C5BA 1E2UA 3RPMA 2C08A 4UDXX 2Z0VA 2OBLA 1QWNA 1W9MA 4AZ5A 1DKXA 2FYVA 4DYLA 4JWCA 4KIKB 1BPRA 3Q0KA 1HTYA 4ILGA 1X03A 1MJGA 4EZXA 1R5EA 1DKZA 2F7PA 2JNKA 3BVVA 2YIVX 1TQTA 4G6QA 4WPCA 3O3MB 2LM0A 1YUWA 3F7WA 4ATMA 2F7OA 4IWQA 3A98A 3I04A 3BVXA 3BVUA 5E84A 5C5BB 4B9QA 4E81A 2WINM 3EJRA 3OWGA 2YKTA 1U00A 2Q12A 3O3NB 3PLTA 2MI7A 4M0MA 4EZOA 2PMRA 4JN4A 2X3WA 3HAIA 3QNIA 3CVRA 4R5GA 3HAHA 4DCNC 4F01A 1O7DB 1R33A 1R34A 3KDRA 3OHXM 4HR1A 1I49A 3SBSA 4EZTA 2ND0A 4EZZA 4FZOA 3B51X 3BLBA 3C7NA 3D2EA 4NPHA 1GN9A 2YI8A 2YL6A 1E1DA 4AVMA 4AZGA 3D4YA 2OW6A 3DX1A 2X3VA 4AZ6A 3M3WA 2EFKA 3ACOA 1DKYA 3B52X 3T48A 2BPRA 2OBMA 4ILHB 1URUA 2GA9D 4JWDA 3ZEDA 2V0OA 2F1BA 2OZNB 1HXKA 3D52A 3QNJA 1GNLA 2YL8A 2QKWA 2RAKA 3G9GA 4HR1B 3O3OB 1SU8A 1OA0A 2JNSA 4JNEA 3C7NB 3BVTA 2YIBA 3UITA 4FZSA 3QWEA 2EFLA 3DPQA 3GI7A 4ILIA 2QFFA 3EJQA 3ERCC 1ZYLA 4EZUA 4AZBA 3VEBA 5FIGA 3BUBA 4EZPA 1SUFA 1PS3A 3N8EA 3KAWA 1I4DA 3LVTA 4IM0A 1Y2OA 3CZNA 2D4CA 1CKRA 1TQWA 3BUPA 2OP6A 3DDFA 2X3XA 2YL5A 4FM3A 4AZCA 3SBTB 4EZNA 3HAJA 3FD9A 4EZRA 4EZQA 3BUDA 3RV0A 3VEAA 1E9VA 4AZHA 4EZSA 2EX3B 3BUIA 1HWWA 3EJSA 4EZWA 2Z0OA 4H8SA 5TKYA 4NSWA 1I4TA 4JWEA 1OA1A 4BNEA 2YI9A 3DX2A 1DG4A 2O0I1 2Q13A 3L3PA 2LXYA 2ALWA 2Z8YA 3D51A 1YWMA 4IWOA 4FZPA 5KBPA 4AZCB 3DPOA 3I01A 2GAFD 4IW0A
chains in the Genus database with same CATH topology
3UITA 3DOBA 4WV7A 4IWQA 3A98A 3I04A 4WV5A 5E84A 3DQGA 2RT6A 3DPQA 3GI7A 2KHOA 2QFFA 4B9QA 4E81A 3ER9B 4ILIA 2WINM 4IM3A 3ERCC 3OWGA 1ZYLA 4EZUA 1SU7A 4D8JA 3VEBA 1OAOA 1U00A 5FIGA 4I43A 3O3NB 4EZPA 4FL9A 1SUFA 4M0MA 2X5CA 4EZOA 3B53X 3N8EA 3KAWA 4HY9A 4IM0A 4JN4A 3I39X 2NCZA 4KIKA 3VKHA 4EZVA 4R5GA 1GNTA 3L3OM 4E3CA 4F01A 4R5JA 1SU6A 7HSCA 3D2FA 2EWFA 3KDRA 4HYBA 4IM2A 3ER8C 3OHXM 4HR1A 4JLCA 3SBSA 1CKRA 4UDYX 4EZTA 2ND0A 4EZZA 2PY6A 4H6HA 3B51X 4PO2A 2OP6A 3C7NA 4R5IA 3D2EA 4F00A 4NPHA 1GN9A 2YI8A 4MQDA 2YIAA 1JQKA 4FM3A 1E1DA 1UPXA 3SBTB 4JL9A 2QXLA 4EZNA 3KAVA 3H0XA 3FD9A 1E2UA 3LMFA 4H6IA 5FLEX 4EZRA 4EZQA 2ND1A 4EZYA 2V7YA 4UDXX 1DKYA 3RV0A 2OBLA 3VEAA 1E9VA 3T47A 3B52X 3T48A 1Q5LA 1W9MA 2EX3B 4EZSA 2OBMA 2BPRA 3RV1A 4ILHB 1DKXA 4EZWA 3ZEFA 2GA9D 4JWDA 3ZEDA 4JWCA 5TKYA 4IWPA 4JWEA 4KIKB 1BPRA 4R5LA 1OA1A 3T46A 4R5KA 2YI9A 4ILGA 1DG4A 4JNFA 1MJGA 3QNJA 1GNLA 4EZXA 1DKZA 2YIVX 2Z8YA 3T4AG 4HR1B 3O3OB 4IWOA 1SU8A 1OA0A 2JNSA 3T49A 4G6QA 2N3KA 3DPPA 4JNEA 3QA8A 3C7NB 3O3MB 2LM0A 1YUWA 3F7WA 3DPOA 4JWIA 2YIBA 3I01A 2GAFD 4IW0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EZN A;  3DOB A;  4WV7 A;  4EZV A;  4JWE A;  1BPR A;  4H6I A;  4R5L A;  4EZR A;  5E84 A;  4R5K A;  4R5G A;  3T46 A;  3DQG A;  3DPQ A;  4WV5 A;  3L3O M;  4EZQ A;  4F01 A;  1DG4 A;  2KHO A;  2QFF A;  4R5J A;  4B9Q A;  4E81 A;  7HSC A;  3D2F A;  4JNF A;  2WIN M;  3QNJ A;  4EZX A;  4EZY A;  1DKZ A;  2V7Y A;  4HYB A;  4EZU A;  4JN4 A;  3OHX M;  1DKY A;  1U00 A;  3T4A G;  1CKR A;  4EZT A;  4EZP A;  4FL9 A;  4EZZ A;  3T49 A;  4H6H A;  3T47 A;  3T48 A;  4PO2 A;  4EZO A;  3DPP A;  3C7N A;  4JNE A;  4R5I A;  4EZS A;  1Q5L A;  2BPR A;  2OP6 A;  3D2E A;  3C7N B;  4F00 A;  3N8E A;  4HY9 A;  1DKX A;  4EZW A;  4JWI A;  4JWD A;  1YUW A;  3DPO A;  4JWC A;  5TKY A;  2QXL A;  3H0X A; 
#chains in the Genus database with same CATH topology
 3DOB A;  1TQV A;  4WV5 A;  2KHO A;  2ELB A;  3LLL A;  4I43 A;  4FL9 A;  3D50 A;  3B53 X;  2WYH A;  4HY9 A;  1LQ7 A;  3SOG A;  3Q84 A;  4E3C A;  4R5J A;  3D2F A;  1O7D C;  3QE6 A;  4IM2 A;  3BVW A;  4H6H A;  3CZS A;  2RAI A;  4PO2 A;  4R5I A;  2F7Q A;  4F00 A;  4MQD A;  3CKD A;  2ZXQ A;  2YLA A;  3KAV A;  1QX1 A;  3LMF A;  4H6I A;  5FLE X;  2F18 A;  2ND1 A;  3I2W A;  4EZY A;  3D4Z A;  4AKV A;  2V7Y A;  1X04 A;  2OO2 A;  3DX4 A;  3T47 A;  1Q5L A;  2YLL A;  3RV1 A;  3EJU A;  3ZEF A;  3DX0 A;  4AZI A;  4IWP A;  4I1Q A;  3EJT A;  4R5L A;  3T46 A;  1WDZ A;  4R5K A;  4JNF A;  1QWU A;  3T4A G;  3T49 A;  2N3K A;  2WYI A;  2YL9 A;  3DPP A;  3QA8 A;  2OW7 A;  4WPE A;  3OK8 A;  4JWI A;  1ZWW A;  3H0X A;  4WV7 A;  3DDG A;  2FIC A;  3DQG A;  2RT6 A;  3ABH A;  3ER9 B;  3CAZ A;  3CV5 A;  4IM3 A;  3DYT A;  3EJP A;  1SU7 A;  4D8J A;  1OAO A;  2GF4 A;  4AZ7 A;  2X5C A;  3I39 X;  2F1A A;  1TQS A;  2NCZ A;  4KIK A;  3VKH A;  4EZV A;  3BUQ A;  1GNT A;  3L3O M;  2RAJ A;  1SU6 A;  7HSC A;  2D1L A;  2EWF A;  1TQU A;  4HYB A;  3ER8 C;  4JLC A;  2Z0N A;  4UDY X;  3SYV A;  3DX3 A;  1I4L A;  2PY6 A;  2F7R A;  2YIA A;  1JQK A;  1UPX A;  4JL9 A;  2QXL A;  4NQI A;  5C5B A;  1E2U A;  3RPM A;  2C08 A;  4UDX X;  2Z0V A;  2OBL A;  1QWN A;  1W9M A;  4AZ5 A;  1DKX A;  2FYV A;  4DYL A;  4JWC A;  4KIK B;  1BPR A;  3Q0K A;  1HTY A;  4ILG A;  1X03 A;  1MJG A;  4EZX A;  1R5E A;  1DKZ A;  2F7P A;  2JNK A;  3BVV A;  2YIV X;  1TQT A;  4G6Q A;  4WPC A;  3O3M B;  2LM0 A;  1YUW A;  3F7W A;  4ATM A;  2F7O A;  4IWQ A;  3A98 A;  3I04 A;  3BVX A;  3BVU A;  5E84 A;  5C5B B;  4B9Q A;  4E81 A;  2WIN M;  3EJR A;  3OWG A;  2YKT A;  1U00 A;  2Q12 A;  3O3N B;  3PLT A;  2MI7 A;  4M0M A;  4EZO A;  2PMR A;  4JN4 A;  2X3W A;  3HAI A;  3QNI A;  3CVR A;  4R5G A;  3HAH A;  4DCN C;  4F01 A;  1O7D B;  1R33 A;  1R34 A;  3KDR A;  3OHX M;  4HR1 A;  1I49 A;  3SBS A;  4EZT A;  2ND0 A;  4EZZ A;  4FZO A;  3B51 X;  3BLB A;  3C7N A;  3D2E A;  4NPH A;  1GN9 A;  2YI8 A;  2YL6 A;  1E1D A;  4AVM A;  4AZG A;  3D4Y A;  2OW6 A;  3DX1 A;  2X3V A;  4AZ6 A;  3M3W A;  2EFK A;  3ACO A;  1DKY A;  3B52 X;  3T48 A;  2BPR A;  2OBM A;  4ILH B;  1URU A;  2GA9 D;  4JWD A;  3ZED A;  2V0O A;  2F1B A;  2OZN B;  1HXK A;  3D52 A;  3QNJ A;  1GNL A;  2YL8 A;  2QKW A;  2RAK A;  3G9G A;  4HR1 B;  3O3O B;  1SU8 A;  1OA0 A;  2JNS A;  4JNE A;  3C7N B;  3BVT A;  2YIB A;  3UIT A;  4FZS A;  3QWE A;  2EFL A;  3DPQ A;  3GI7 A;  4ILI A;  2QFF A;  3EJQ A;  3ERC C;  1ZYL A;  4EZU A;  4AZB A;  3VEB A;  5FIG A;  3BUB A;  4EZP A;  1SUF A;  1PS3 A;  3N8E A;  3KAW A;  1I4D A;  3LVT A;  4IM0 A;  1Y2O A;  3CZN A;  2D4C A;  1CKR A;  1TQW A;  3BUP A;  2OP6 A;  3DDF A;  2X3X A;  2YL5 A;  4FM3 A;  4AZC A;  3SBT B;  4EZN A;  3HAJ A;  3FD9 A;  4EZR A;  4EZQ A;  3BUD A;  3RV0 A;  3VEA A;  1E9V A;  4AZH A;  4EZS A;  2EX3 B;  3BUI A;  1HWW A;  3EJS A;  4EZW A;  2Z0O A;  4H8S A;  5TKY A;  4NSW A;  1I4T A;  4JWE A;  1OA1 A;  4BNE A;  2YI9 A;  3DX2 A;  1DG4 A;  2O0I 1;  2Q13 A;  3L3P A;  2LXY A;  2ALW A;  2Z8Y A;  3D51 A;  1YWM A;  4IWO A;  4FZP A;  5KBP A;  4AZC B;  3DPO A;  3I01 A;  2GAF D;  4IW0 A; 
#chains in the Genus database with same CATH homology
 3UIT A;  3DOB A;  4WV7 A;  4IWQ A;  3A98 A;  3I04 A;  4WV5 A;  5E84 A;  3DQG A;  2RT6 A;  3DPQ A;  3GI7 A;  2KHO A;  2QFF A;  4B9Q A;  4E81 A;  3ER9 B;  4ILI A;  2WIN M;  4IM3 A;  3ERC C;  3OWG A;  1ZYL A;  4EZU A;  1SU7 A;  4D8J A;  3VEB A;  1OAO A;  1U00 A;  5FIG A;  4I43 A;  3O3N B;  4EZP A;  4FL9 A;  1SUF A;  4M0M A;  2X5C A;  4EZO A;  3B53 X;  3N8E A;  3KAW A;  4HY9 A;  4IM0 A;  4JN4 A;  3I39 X;  2NCZ A;  4KIK A;  3VKH A;  4EZV A;  4R5G A;  1GNT A;  3L3O M;  4E3C A;  4F01 A;  4R5J A;  1SU6 A;  7HSC A;  3D2F A;  2EWF A;  3KDR A;  4HYB A;  4IM2 A;  3ER8 C;  3OHX M;  4HR1 A;  4JLC A;  3SBS A;  1CKR A;  4UDY X;  4EZT A;  2ND0 A;  4EZZ A;  2PY6 A;  4H6H A;  3B51 X;  4PO2 A;  2OP6 A;  3C7N A;  4R5I A;  3D2E A;  4F00 A;  4NPH A;  1GN9 A;  2YI8 A;  4MQD A;  2YIA A;  1JQK A;  4FM3 A;  1E1D A;  1UPX A;  3SBT B;  4JL9 A;  2QXL A;  4EZN A;  3KAV A;  3H0X A;  3FD9 A;  1E2U A;  3LMF A;  4H6I A;  5FLE X;  4EZR A;  4EZQ A;  2ND1 A;  4EZY A;  2V7Y A;  4UDX X;  1DKY A;  3RV0 A;  2OBL A;  3VEA A;  1E9V A;  3T47 A;  3B52 X;  3T48 A;  1Q5L A;  1W9M A;  2EX3 B;  4EZS A;  2OBM A;  2BPR A;  3RV1 A;  4ILH B;  1DKX A;  4EZW A;  3ZEF A;  2GA9 D;  4JWD A;  3ZED A;  4JWC A;  5TKY A;  4IWP A;  4JWE A;  4KIK B;  1BPR A;  4R5L A;  1OA1 A;  3T46 A;  4R5K A;  2YI9 A;  4ILG A;  1DG4 A;  4JNF A;  1MJG A;  3QNJ A;  1GNL A;  4EZX A;  1DKZ A;  2YIV X;  2Z8Y A;  3T4A G;  4HR1 B;  3O3O B;  4IWO A;  1SU8 A;  1OA0 A;  2JNS A;  3T49 A;  4G6Q A;  2N3K A;  3DPP A;  4JNE A;  3QA8 A;  3C7N B;  3O3M B;  2LM0 A;  1YUW A;  3F7W A;  3DPO A;  4JWI A;  2YIB A;  3I01 A;  2GAF D;  4IW0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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