4HYBA

Crystal structure of the substrate binding domain of e.coli dnak in complex with pyrrhocoricin_lyzi (residues 1 to 10)
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
213
structure length
213
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone, peptide binding protein
molecule keywords Chaperone protein DnaK
publication title Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK.
pubmed doi rcsb
source organism Escherichia coli
total genus 62
structure length 213
sequence length 213
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-11-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4hybA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4hybA01
1U00A 4H6IA 4JWIA 4EZVA 3N8EA 4JN4A 4EZSA 4EZWA 4EZRA 3H0XA 3D2FA 4JWDA 4HYBA 4JNFA 3L3OM 1DG4A 4EZOA 4E81A 1CKRA 3QNJA 3C7NA 4JNEA 1DKYA 4R5JA 4EZPA 4R5IA 3T46A 4EZYA 4FL9A 4HY9A 4EZTA 4F01A 2WINM 4R5LA 3T48A 1DKZA 4JWCA 2KHOA 3DPPA 4R5GA 4WV7A 4JWEA 2OP6A 3C7NB 4EZQA 5E84A 2BPRA 4B9QA 1BPRA 3T4AG 3T47A 4R5KA 3T49A 2V7YA 3DQGA 7HSCA 1DKXA 2QFFA 5TKYA 3DPQA 1YUWA 4EZZA 4EZXA 4EZNA 4EZUA 4F00A 1Q5LA 3OHXM 4H6HA 4WV5A 3DPOA 4PO2A 3DOBA 2QXLA 3D2EA
chains in the Genus database with same CATH superfamily
3DX1A 3F7WA 4EZRA 1X03A 2V0OA 3EJSA 3QNJA 3B53X 4IWQA 1DKZA 5FLEX 2PMRA 1E2UA 5C5BB 4EZZA 4AKVA 3A98A 4AZ7A 3RPMA 3QWEA 4R5IA 2ALWA 1SUFA 2OP6A 3C7NB 1SU7A 4WPCA 2QFFA 2F1BA 4BNEA 2F7OA 1URUA 4IM3A 2YIBA 4R5JA 4DYLA 2FYVA 1R33A 4F01A 5FIGA 2YIAA 2F7PA 2YLLA 3VEBA 3DX4A 1BPRA 2OBLA 1Y2OA 2GF4A 3CAZA 4FZSA 2D1LA 4H6HA 3LLLA 4PO2A 3DOBA 1U00A 3ACOA 4JN4A 1TQWA 4JL9A 3KAWA 1HTYA 3BVUA 2YL6A 2OZNB 4AZBA 5C5BA 1GNLA 3B51X 3DX3A 3EJRA 4AZHA 3Q0KA 4IM2A 4NPHA 3D51A 3ER8C 3T49A 3CKDA 3O3MB 4E3CA 2OO2A 3HAHA 3DPOA 2QXLA 2F7QA 4AZ5A 2F7RA 2N3KA 3C7NA 4JNEA 1PS3A 2RT6A 4EZPA 4AZIA 4EZYA 4R5LA 3I39X 3D52A 3I01A 4R5GA 3SBTB 3BVVA 4DCNC 2WYIA 3D4YA 1OA1A 3SOGA 3ZEFA 1MJGA 1I49A 3OWGA 2NCZA 4MQDA 1WDZA 4UDYX 4EZTA 1TQSA 3BUIA 3VKHA 1YUWA 3L3PA 4WV5A 2X3XA 2YL5A 3N8EA 4EZSA 1ZYLA 1X04A 1R5EA 2WINM 1E9VA 1QX1A 2KHOA 3OK8A 3RV1A 5KBPA 3T47A 1O7DC 3EJPA 4NSWA 3O3NB 1I4DA 1W9MA 2MI7A 4G6QA 2C08A 1I4LA 2D4CA 4JWDA 4JNFA 4FZPA 4HYBA 2JNSA 4HY9A 2PY6A 2Z0OA 4WV7A 4IM0A 1E1DA 3KDRA 3I2WA 3DQGA 4AZGA 3DPQA 3BUPA 2FICA 3RV0A 4EZUA 3OHXM 3BUBA 2EFKA 3D50A 2OBMA 2YLAA 2BPRA 2V7YA 3T4AG 4D8JA 7HSCA 3VEAA 4I43A 3CV5A 2YL8A 4ATMA 4AVMA 3EJUA 3LVTA 1GNTA 3QNIA 4H8SA 1CKRA 3DYTA 1DKYA 4IWPA 3ZEDA 4KIKA 2YI8A 3DPPA 3DX0A 1HWWA 2Z0NA 3ER9B 4UDXX 3CZSA 4FZOA 2RAJA 4EZOA 4ILHB 3DX2A 2YKTA 3BVWA 4ILIA 1TQUA 4JWCA 4IWOA 5E84A 3DDGA 4R5KA 5TKYA 3HAJA 1Q5LA 3CZNA 1ZWWA 1R34A 4EZVA 2ND0A 4JWIA 2ND1A 3M3WA 2YI9A 2O0I1 3O3OB 3ERCC 1O7DB 2EWFA 2Q12A 1QWNA 4NQIA 4EZQA 1TQTA 3HAIA 2OW6A 2Q13A 3BUQA 4EZXA 4EZNA 4KIKB 3D2EA 2YL9A 2WYHA 2EX3B 2RAKA 2X3WA 1QWUA 1GN9A 1TQVA 1SU8A 1OA0A 4IW0A 1SU6A 2LXYA 3DDFA 2ZXQA 2Z0VA 1I4TA 3G9GA 2EFLA 3L3OM 1DG4A 3BVTA 4HR1A 3KAVA 3SYVA 3EJQA 3T46A 2F18A 3SBSA 3T48A 4AZCA 3QE6A 4M0MA 1LQ7A 4B9QA 3BVXA 3D4ZA 3LMFA 4H6IA 4I1QA 4EZWA 3H0XA 4AZ6A 4E81A 3BLBA 3EJTA 2X3VA 4FM3A 2F1AA 3I04A 4FL9A 3CVRA 2GA9D 3BUDA 2QKWA 2LM0A 2Z8YA 1JQKA 3B52X 2YIVX 4WPEA 2RAIA 1DKXA 1UPXA 3FD9A 3QA8A 4JLCA 2X5CA 3Q84A 3D2FA 2GAFD 2JNKA 3ABHA 3GI7A 4HR1B 4JWEA 3UITA 1HXKA 3PLTA 4ILGA 2OW7A 4AZCB 4F00A 2ELBA 1YWMA 1OAOA
chains in the Genus database with same CATH topology
2EX3B 3F7WA 2N3KA 4EZRA 3QNJA 3C7NA 4JNEA 1GN9A 2RT6A 4EZPA 1SU8A 4EZYA 1OA0A 2OBMA 3B53X 4IWQA 1DKZA 4R5LA 4IW0A 3I39X 1SU6A 3I01A 5FLEX 1E2UA 4R5GA 3SBTB 2BPRA 2V7YA 3T4AG 4D8JA 7HSCA 3VEAA 4I43A 1OA1A 4EZZA 3ZEFA 1MJGA 3L3OM 1DG4A 4HR1A 3OWGA 3A98A 2NCZA 4MQDA 1GNTA 1CKRA 3KAVA 3ZEDA 1DKYA 4IWPA 4R5IA 3T46A 4UDYX 4EZTA 3SBSA 3T48A 4KIKA 1SUFA 2YI8A 3DPPA 2OP6A 4M0MA 3VKHA 3C7NB 1SU7A 4B9QA 2QFFA 3ER9B 1YUWA 4WV5A 3LMFA 4UDXX 4H6IA 3N8EA 4EZSA 4EZWA 4IM3A 3H0XA 2YIBA 4EZOA 4E81A 4ILHB 1ZYLA 4R5JA 4FM3A 3I04A 4FL9A 4ILIA 4F01A 5FIGA 2WINM 1E9VA 4JWCA 2KHOA 2GA9D 2YIAA 4IWOA 3VEBA 2LM0A 3RV1A 2Z8YA 5E84A 1JQKA 2OBLA 3B52X 3T47A 4R5KA 1BPRA 2YIVX 5TKYA 3O3NB 1Q5LA 1W9MA 4H6HA 4PO2A 3DOBA 1DKXA 1UPXA 4G6QA 3FD9A 1U00A 4JWIA 2ND0A 3QA8A 4JLCA 4JN4A 2X5CA 4EZVA 4JL9A 2ND1A 3D2FA 2GAFD 3KAWA 4HYBA 4JNFA 4JWDA 2YI9A 3O3OB 3ERCC 2JNSA 4HY9A 2PY6A 1GNLA 2EWFA 3GI7A 3B51X 4HR1B 4WV7A 4IM0A 4JWEA 1E1DA 3KDRA 4IM2A 4EZQA 4NPHA 3UITA 3ER8C 3T49A 3DQGA 4ILGA 3DPQA 3O3MB 4E3CA 4EZXA 3RV0A 4EZNA 4KIKB 4EZUA 3OHXM 4F00A 3DPOA 2QXLA 3D2EA 1OAOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U00 A;  4H6I A;  4JWI A;  4EZV A;  3N8E A;  4JN4 A;  4EZS A;  4EZW A;  4EZR A;  3H0X A;  3D2F A;  4JWD A;  4HYB A;  4JNF A;  3L3O M;  1DG4 A;  4EZO A;  4E81 A;  1CKR A;  3QNJ A;  3C7N A;  4JNE A;  1DKY A;  4R5J A;  4EZP A;  4R5I A;  3T46 A;  4EZY A;  4FL9 A;  4HY9 A;  4EZT A;  4F01 A;  2WIN M;  4R5L A;  3T48 A;  1DKZ A;  4JWC A;  2KHO A;  3DPP A;  4R5G A;  4WV7 A;  4JWE A;  2OP6 A;  3C7N B;  4EZQ A;  5E84 A;  2BPR A;  4B9Q A;  1BPR A;  3T4A G;  3T47 A;  4R5K A;  3T49 A;  2V7Y A;  3DQG A;  7HSC A;  1DKX A;  2QFF A;  5TKY A;  3DPQ A;  1YUW A;  4EZZ A;  4EZX A;  4EZN A;  4EZU A;  4F00 A;  1Q5L A;  3OHX M;  4H6H A;  4WV5 A;  3DPO A;  4PO2 A;  3DOB A;  2QXL A;  3D2E A; 
#chains in the Genus database with same CATH topology
 3DX1 A;  3F7W A;  4EZR A;  1X03 A;  2V0O A;  3EJS A;  3QNJ A;  3B53 X;  4IWQ A;  1DKZ A;  5FLE X;  2PMR A;  1E2U A;  5C5B B;  4EZZ A;  4AKV A;  3A98 A;  4AZ7 A;  3RPM A;  3QWE A;  4R5I A;  2ALW A;  1SUF A;  2OP6 A;  3C7N B;  1SU7 A;  4WPC A;  2QFF A;  2F1B A;  4BNE A;  2F7O A;  1URU A;  4IM3 A;  2YIB A;  4R5J A;  4DYL A;  2FYV A;  1R33 A;  4F01 A;  5FIG A;  2YIA A;  2F7P A;  2YLL A;  3VEB A;  3DX4 A;  1BPR A;  2OBL A;  1Y2O A;  2GF4 A;  3CAZ A;  4FZS A;  2D1L A;  4H6H A;  3LLL A;  4PO2 A;  3DOB A;  1U00 A;  3ACO A;  4JN4 A;  1TQW A;  4JL9 A;  3KAW A;  1HTY A;  3BVU A;  2YL6 A;  2OZN B;  4AZB A;  5C5B A;  1GNL A;  3B51 X;  3DX3 A;  3EJR A;  4AZH A;  3Q0K A;  4IM2 A;  4NPH A;  3D51 A;  3ER8 C;  3T49 A;  3CKD A;  3O3M B;  4E3C A;  2OO2 A;  3HAH A;  3DPO A;  2QXL A;  2F7Q A;  4AZ5 A;  2F7R A;  2N3K A;  3C7N A;  4JNE A;  1PS3 A;  2RT6 A;  4EZP A;  4AZI A;  4EZY A;  4R5L A;  3I39 X;  3D52 A;  3I01 A;  4R5G A;  3SBT B;  3BVV A;  4DCN C;  2WYI A;  3D4Y A;  1OA1 A;  3SOG A;  3ZEF A;  1MJG A;  1I49 A;  3OWG A;  2NCZ A;  4MQD A;  1WDZ A;  4UDY X;  4EZT A;  1TQS A;  3BUI A;  3VKH A;  1YUW A;  3L3P A;  4WV5 A;  2X3X A;  2YL5 A;  3N8E A;  4EZS A;  1ZYL A;  1X04 A;  1R5E A;  2WIN M;  1E9V A;  1QX1 A;  2KHO A;  3OK8 A;  3RV1 A;  5KBP A;  3T47 A;  1O7D C;  3EJP A;  4NSW A;  3O3N B;  1I4D A;  1W9M A;  2MI7 A;  4G6Q A;  2C08 A;  1I4L A;  2D4C A;  4JWD A;  4JNF A;  4FZP A;  4HYB A;  2JNS A;  4HY9 A;  2PY6 A;  2Z0O A;  4WV7 A;  4IM0 A;  1E1D A;  3KDR A;  3I2W A;  3DQG A;  4AZG A;  3DPQ A;  3BUP A;  2FIC A;  3RV0 A;  4EZU A;  3OHX M;  3BUB A;  2EFK A;  3D50 A;  2OBM A;  2YLA A;  2BPR A;  2V7Y A;  3T4A G;  4D8J A;  7HSC A;  3VEA A;  4I43 A;  3CV5 A;  2YL8 A;  4ATM A;  4AVM A;  3EJU A;  3LVT A;  1GNT A;  3QNI A;  4H8S A;  1CKR A;  3DYT A;  1DKY A;  4IWP A;  3ZED A;  4KIK A;  2YI8 A;  3DPP A;  3DX0 A;  1HWW A;  2Z0N A;  3ER9 B;  4UDX X;  3CZS A;  4FZO A;  2RAJ A;  4EZO A;  4ILH B;  3DX2 A;  2YKT A;  3BVW A;  4ILI A;  1TQU A;  4JWC A;  4IWO A;  5E84 A;  3DDG A;  4R5K A;  5TKY A;  3HAJ A;  1Q5L A;  3CZN A;  1ZWW A;  1R34 A;  4EZV A;  2ND0 A;  4JWI A;  2ND1 A;  3M3W A;  2YI9 A;  2O0I 1;  3O3O B;  3ERC C;  1O7D B;  2EWF A;  2Q12 A;  1QWN A;  4NQI A;  4EZQ A;  1TQT A;  3HAI A;  2OW6 A;  2Q13 A;  3BUQ A;  4EZX A;  4EZN A;  4KIK B;  3D2E A;  2YL9 A;  2WYH A;  2EX3 B;  2RAK A;  2X3W A;  1QWU A;  1GN9 A;  1TQV A;  1SU8 A;  1OA0 A;  4IW0 A;  1SU6 A;  2LXY A;  3DDF A;  2ZXQ A;  2Z0V A;  1I4T A;  3G9G A;  2EFL A;  3L3O M;  1DG4 A;  3BVT A;  4HR1 A;  3KAV A;  3SYV A;  3EJQ A;  3T46 A;  2F18 A;  3SBS A;  3T48 A;  4AZC A;  3QE6 A;  4M0M A;  1LQ7 A;  4B9Q A;  3BVX A;  3D4Z A;  3LMF A;  4H6I A;  4I1Q A;  4EZW A;  3H0X A;  4AZ6 A;  4E81 A;  3BLB A;  3EJT A;  2X3V A;  4FM3 A;  2F1A A;  3I04 A;  4FL9 A;  3CVR A;  2GA9 D;  3BUD A;  2QKW A;  2LM0 A;  2Z8Y A;  1JQK A;  3B52 X;  2YIV X;  4WPE A;  2RAI A;  1DKX A;  1UPX A;  3FD9 A;  3QA8 A;  4JLC A;  2X5C A;  3Q84 A;  3D2F A;  2GAF D;  2JNK A;  3ABH A;  3GI7 A;  4HR1 B;  4JWE A;  3UIT A;  1HXK A;  3PLT A;  4ILG A;  2OW7 A;  4AZC B;  4F00 A;  2ELB A;  1YWM A;  1OAO A; 
#chains in the Genus database with same CATH homology
 2EX3 B;  3F7W A;  2N3K A;  4EZR A;  3QNJ A;  3C7N A;  4JNE A;  1GN9 A;  2RT6 A;  4EZP A;  1SU8 A;  4EZY A;  1OA0 A;  2OBM A;  3B53 X;  4IWQ A;  1DKZ A;  4R5L A;  4IW0 A;  3I39 X;  1SU6 A;  3I01 A;  5FLE X;  1E2U A;  4R5G A;  3SBT B;  2BPR A;  2V7Y A;  3T4A G;  4D8J A;  7HSC A;  3VEA A;  4I43 A;  1OA1 A;  4EZZ A;  3ZEF A;  1MJG A;  3L3O M;  1DG4 A;  4HR1 A;  3OWG A;  3A98 A;  2NCZ A;  4MQD A;  1GNT A;  1CKR A;  3KAV A;  3ZED A;  1DKY A;  4IWP A;  4R5I A;  3T46 A;  4UDY X;  4EZT A;  3SBS A;  3T48 A;  4KIK A;  1SUF A;  2YI8 A;  3DPP A;  2OP6 A;  4M0M A;  3VKH A;  3C7N B;  1SU7 A;  4B9Q A;  2QFF A;  3ER9 B;  1YUW A;  4WV5 A;  3LMF A;  4UDX X;  4H6I A;  3N8E A;  4EZS A;  4EZW A;  4IM3 A;  3H0X A;  2YIB A;  4EZO A;  4E81 A;  4ILH B;  1ZYL A;  4R5J A;  4FM3 A;  3I04 A;  4FL9 A;  4ILI A;  4F01 A;  5FIG A;  2WIN M;  1E9V A;  4JWC A;  2KHO A;  2GA9 D;  2YIA A;  4IWO A;  3VEB A;  2LM0 A;  3RV1 A;  2Z8Y A;  5E84 A;  1JQK A;  2OBL A;  3B52 X;  3T47 A;  4R5K A;  1BPR A;  2YIV X;  5TKY A;  3O3N B;  1Q5L A;  1W9M A;  4H6H A;  4PO2 A;  3DOB A;  1DKX A;  1UPX A;  4G6Q A;  3FD9 A;  1U00 A;  4JWI A;  2ND0 A;  3QA8 A;  4JLC A;  4JN4 A;  2X5C A;  4EZV A;  4JL9 A;  2ND1 A;  3D2F A;  2GAF D;  3KAW A;  4HYB A;  4JNF A;  4JWD A;  2YI9 A;  3O3O B;  3ERC C;  2JNS A;  4HY9 A;  2PY6 A;  1GNL A;  2EWF A;  3GI7 A;  3B51 X;  4HR1 B;  4WV7 A;  4IM0 A;  4JWE A;  1E1D A;  3KDR A;  4IM2 A;  4EZQ A;  4NPH A;  3UIT A;  3ER8 C;  3T49 A;  3DQG A;  4ILG A;  3DPQ A;  3O3M B;  4E3C A;  4EZX A;  3RV0 A;  4EZN A;  4KIK B;  4EZU A;  3OHX M;  4F00 A;  3DPO A;  2QXL A;  3D2E A;  1OAO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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