4EZTA

Crystal structure of the substrate binding domain of e.coli dnak in complex with heliocin (residues 14 to 21)
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
217
structure length
217
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/peptide binding protein
source organism Escherichia coli
publication title Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK.
pubmed doi rcsb
molecule keywords Chaperone protein DnaK
total genus 65
structure length 217
sequence length 217
ec nomenclature
pdb deposition date 2012-05-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4eztA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4eztA01
4JNEA 5E84A 1YUWA 2BPRA 3T46A 4EZUA 4JWCA 4WV5A 1DKYA 3D2EA 3D2FA 3OHXM 1DKXA 4R5IA 4EZQA 2OP6A 4EZRA 1CKRA 2WINM 4PO2A 4E81A 4R5LA 1DKZA 3T4AG 4EZVA 1BPRA 4JN4A 4EZWA 1Q5LA 3DPQA 4EZOA 7HSCA 4HYBA 4EZZA 4EZSA 3L3OM 3T49A 1DG4A 4H6HA 3H0XA 4EZXA 4JNFA 4EZTA 3DOBA 3N8EA 4R5KA 5TKYA 4JWDA 3C7NB 3QNJA 2KHOA 2QXLA 4F01A 3C7NA 3DPPA 1U00A 4EZNA 4JWEA 2QFFA 4H6IA 4R5JA 3DPOA 4JWIA 3T47A 4EZYA 3T48A 2V7YA 3DQGA 4R5GA 4B9QA 4WV7A 4EZPA 4F00A 4FL9A 4HY9A
chains in the Genus database with same CATH superfamily
3EJSA 3VKHA 3KDRA 3PLTA 3ER9B 4WV5A 4EZRA 1UPXA 4ILHB 2OW7A 2YI8A 4EZZA 2GA9D 4IWOA 1I49A 2YL8A 3I2WA 4KIKA 3ACOA 2LM0A 3A98A 4EZYA 4WV7A 3FD9A 1I4DA 1YWMA 4IM3A 3BUBA 4PO2A 4JLCA 1Y2OA 3L3OM 1HTYA 1W9MA 1R34A 3RV0A 4H6IA 2F7QA 2YLLA 4ILIA 4HY9A 2Z8YA 2D1LA 3D2EA 3OHXM 2YL9A 3T49A 4H6HA 3QNIA 3EJUA 3SBSA 3CAZA 3QNJA 3D51A 4F01A 4AVMA 2QKWA 3O3OB 3RPMA 4ATMA 3I39X 3LLLA 3B51X 3ZEDA 2OP6A 1GN9A 4EZVA 7HSCA 4JWDA 3LMFA 1O7DB 2PMRA 2YL6A 3HAHA 2RAIA 2FYVA 4JWIA 5FLEX 3DX0A 1I4LA 3KAVA 4EZUA 2EX3B 2YIBA 3L3PA 3DPQA 3I01A 3O3NB 4JL9A 3LVTA 3I04A 1JQKA 2KHOA 3C7NA 3DPPA 3DDGA 4HR1A 2QFFA 1I4TA 3T48A 3DYTA 4DCNC 1DKXA 4NSWA 4MQDA 2D4CA 3ABHA 3B53X 2OO2A 5KBPA 2F7PA 1ZYLA 2QXLA 1U00A 3VEAA 3OWGA 2Z0OA 2RAJA 2Q12A 3GI7A 2EWFA 2ZXQA 4EZWA 4AZIA 1OA0A 1SUFA 5C5BB 4EZXA 4EZTA 4B9QA 1X04A 4AZGA 1YUWA 3T46A 4FZOA 2Q13A 3EJPA 2F1BA 3DX3A 2X3VA 1PS3A 4IW0A 4E81A 3EJQA 4EZOA 4EZSA 4AZCB 2ALWA 2F1AA 4IWQA 3DDFA 1X03A 2JNKA 2O0I1 2PY6A 3QA8A 1TQWA 3BUIA 1OA1A 2OZNB 4DYLA 1DKZA 1BPRA 1Q5LA 1DG4A 4AKVA 3H0XA 1OAOA 3EJRA 4KIKB 3CZSA 3BVWA 4UDXX 1SU7A 4R5GA 3CVRA 3ZEFA 3BUDA 2BPRA 2YL5A 2LXYA 3OK8A 1DKYA 2WINM 3D52A 4R5LA 1E2UA 2ND1A 4ILGA 4JNFA 1QWNA 4R5KA 4AZ5A 2C08A 1HXKA 4I1QA 4NQIA 1SU8A 2WYHA 1O7DC 1HWWA 1WDZA 1MJGA 3M3WA 2YLAA 4JWCA 3G9GA 4AZHA 2MI7A 4FZSA 3DX2A 3QE6A 3BUQA 3SOGA 1E9VA 1LQ7A 5TKYA 2EFKA 2EFLA 3CKDA 2V0OA 1R33A 3B52X 4EZPA 3Q84A 4AZBA 4AZ6A 2Z0VA 4D8JA 4M0MA 3CZNA 3CV5A 3SYVA 3HAJA 4EZQA 1TQSA 2RAKA 2F7RA 3RV1A 2X3WA 2N3KA 3DOBA 4IM2A 3BLBA 3UITA 2YKTA 1QX1A 4EZNA 4JWEA 2V7YA 2ELBA 2OBMA 3F7WA 4FL9A 4I43A 3SBTB 2F18A 1TQVA 2YIVX 1ZWWA 1GNTA 1QWUA 2YIAA 3VEBA 3N8EA 2X5CA 3KAWA 3C7NB 4HR1B 3DX4A 3D4YA 2NCZA 2RT6A 4R5JA 3BVUA 1URUA 3O3MB 4F00A 4JNEA 2F7OA 2ND0A 3QWEA 4JN4A 4HYBA 1TQUA 4FM3A 3BUPA 3EJTA 4H8SA 2OW6A 2WYIA 3Q0KA 5FIGA 2FICA 3DQGA 2YI9A 5E84A 3ER8C 3BVVA 3DX1A 4AZ7A 3D2FA 4R5IA 2GF4A 4IM0A 1SU6A 3ERCC 3HAIA 3D4ZA 2OBLA 5C5BA 1E1DA 2Z0NA 4IWPA 3BVXA 4G6QA 3D50A 4NPHA 2GAFD 1CKRA 3T4AG 4E3CA 4WPCA 4FZPA 4WPEA 1TQTA 3BVTA 1GNLA 4AZCA 2JNSA 2X3XA 4UDYX 3T47A 1R5EA 3DPOA 4BNEA
chains in the Genus database with same CATH topology
3SBTB 3VKHA 1OA1A 3KDRA 3KAVA 4EZUA 3ER9B 4WV5A 2EX3B 2YIVX 2YIBA 4EZRA 1UPXA 4ILHB 1DKZA 1BPRA 2YI8A 1Q5LA 3DPQA 1GNTA 4EZZA 3I01A 3O3NB 2GA9D 1DG4A 4IWOA 3H0XA 1OAOA 2YIAA 4KIKB 3VEBA 3N8EA 2X5CA 3KAWA 4JL9A 4KIKA 3C7NB 3I04A 1JQKA 4HR1B 2KHOA 4UDXX 1SU7A 2LM0A 2NCZA 3A98A 3C7NA 2RT6A 3DPPA 4HR1A 2QFFA 4R5JA 4EZYA 3T48A 3O3MB 4R5GA 4WV7A 3ZEFA 4F00A 3FD9A 4JNEA 2BPRA 2ND0A 4IM3A 1DKYA 1DKXA 2WINM 4PO2A 4MQDA 4R5LA 4JLCA 1E2UA 4JN4A 2ND1A 4HYBA 3L3OM 4ILGA 1W9MA 3B53X 4JNFA 4FM3A 4R5KA 3RV0A 1ZYLA 2QXLA 1U00A 4H6IA 1SU8A 5FIGA 3VEAA 3DQGA 3OWGA 4ILIA 2YI9A 4HY9A 5E84A 3ER8C 1MJGA 2Z8YA 4JWCA 3GI7A 3D2EA 3D2FA 3OHXM 4R5IA 2EWFA 4EZWA 4IM0A 1SU6A 1OA0A 3T49A 1E9VA 3ERCC 4H6HA 1SUFA 4EZXA 4EZTA 2OBLA 3SBSA 5TKYA 3QNJA 1E1DA 4IWPA 4F01A 3O3OB 3B52X 4B9QA 4EZPA 3I39X 4G6QA 3B51X 3ZEDA 4D8JA 1YUWA 4M0MA 4NPHA 3T46A 2GAFD 4EZQA 2OP6A 1CKRA 1GN9A 4IW0A 4E81A 3T4AG 4EZVA 3RV1A 4EZOA 4E3CA 7HSCA 4EZSA 2N3KA 3DOBA 4IM2A 4IWQA 3UITA 1GNLA 4JWDA 2JNSA 3LMFA 2PY6A 4UDYX 3QA8A 4EZNA 4JWEA 3T47A 3DPOA 4JWIA 2V7YA 2OBMA 3F7WA 5FLEX 4FL9A 4I43A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JNE A;  5E84 A;  1YUW A;  2BPR A;  3T46 A;  4EZU A;  4JWC A;  4WV5 A;  1DKY A;  3D2E A;  3D2F A;  3OHX M;  1DKX A;  4R5I A;  4EZQ A;  2OP6 A;  4EZR A;  1CKR A;  2WIN M;  4PO2 A;  4E81 A;  4R5L A;  1DKZ A;  3T4A G;  4EZV A;  1BPR A;  4JN4 A;  4EZW A;  1Q5L A;  3DPQ A;  4EZO A;  7HSC A;  4HYB A;  4EZZ A;  4EZS A;  3L3O M;  3T49 A;  1DG4 A;  4H6H A;  3H0X A;  4EZX A;  4JNF A;  4EZT A;  3DOB A;  3N8E A;  4R5K A;  5TKY A;  4JWD A;  3C7N B;  3QNJ A;  2KHO A;  2QXL A;  4F01 A;  3C7N A;  3DPP A;  1U00 A;  4EZN A;  4JWE A;  2QFF A;  4H6I A;  4R5J A;  3DPO A;  4JWI A;  3T47 A;  4EZY A;  3T48 A;  2V7Y A;  3DQG A;  4R5G A;  4B9Q A;  4WV7 A;  4EZP A;  4F00 A;  4FL9 A;  4HY9 A; 
#chains in the Genus database with same CATH topology
 3EJS A;  3VKH A;  3KDR A;  3PLT A;  3ER9 B;  4WV5 A;  4EZR A;  1UPX A;  4ILH B;  2OW7 A;  2YI8 A;  4EZZ A;  2GA9 D;  4IWO A;  1I49 A;  2YL8 A;  3I2W A;  4KIK A;  3ACO A;  2LM0 A;  3A98 A;  4EZY A;  4WV7 A;  3FD9 A;  1I4D A;  1YWM A;  4IM3 A;  3BUB A;  4PO2 A;  4JLC A;  1Y2O A;  3L3O M;  1HTY A;  1W9M A;  1R34 A;  3RV0 A;  4H6I A;  2F7Q A;  2YLL A;  4ILI A;  4HY9 A;  2Z8Y A;  2D1L A;  3D2E A;  3OHX M;  2YL9 A;  3T49 A;  4H6H A;  3QNI A;  3EJU A;  3SBS A;  3CAZ A;  3QNJ A;  3D51 A;  4F01 A;  4AVM A;  2QKW A;  3O3O B;  3RPM A;  4ATM A;  3I39 X;  3LLL A;  3B51 X;  3ZED A;  2OP6 A;  1GN9 A;  4EZV A;  7HSC A;  4JWD A;  3LMF A;  1O7D B;  2PMR A;  2YL6 A;  3HAH A;  2RAI A;  2FYV A;  4JWI A;  5FLE X;  3DX0 A;  1I4L A;  3KAV A;  4EZU A;  2EX3 B;  2YIB A;  3L3P A;  3DPQ A;  3I01 A;  3O3N B;  4JL9 A;  3LVT A;  3I04 A;  1JQK A;  2KHO A;  3C7N A;  3DPP A;  3DDG A;  4HR1 A;  2QFF A;  1I4T A;  3T48 A;  3DYT A;  4DCN C;  1DKX A;  4NSW A;  4MQD A;  2D4C A;  3ABH A;  3B53 X;  2OO2 A;  5KBP A;  2F7P A;  1ZYL A;  2QXL A;  1U00 A;  3VEA A;  3OWG A;  2Z0O A;  2RAJ A;  2Q12 A;  3GI7 A;  2EWF A;  2ZXQ A;  4EZW A;  4AZI A;  1OA0 A;  1SUF A;  5C5B B;  4EZX A;  4EZT A;  4B9Q A;  1X04 A;  4AZG A;  1YUW A;  3T46 A;  4FZO A;  2Q13 A;  3EJP A;  2F1B A;  3DX3 A;  2X3V A;  1PS3 A;  4IW0 A;  4E81 A;  3EJQ A;  4EZO A;  4EZS A;  4AZC B;  2ALW A;  2F1A A;  4IWQ A;  3DDF A;  1X03 A;  2JNK A;  2O0I 1;  2PY6 A;  3QA8 A;  1TQW A;  3BUI A;  1OA1 A;  2OZN B;  4DYL A;  1DKZ A;  1BPR A;  1Q5L A;  1DG4 A;  4AKV A;  3H0X A;  1OAO A;  3EJR A;  4KIK B;  3CZS A;  3BVW A;  4UDX X;  1SU7 A;  4R5G A;  3CVR A;  3ZEF A;  3BUD A;  2BPR A;  2YL5 A;  2LXY A;  3OK8 A;  1DKY A;  2WIN M;  3D52 A;  4R5L A;  1E2U A;  2ND1 A;  4ILG A;  4JNF A;  1QWN A;  4R5K A;  4AZ5 A;  2C08 A;  1HXK A;  4I1Q A;  4NQI A;  1SU8 A;  2WYH A;  1O7D C;  1HWW A;  1WDZ A;  1MJG A;  3M3W A;  2YLA A;  4JWC A;  3G9G A;  4AZH A;  2MI7 A;  4FZS A;  3DX2 A;  3QE6 A;  3BUQ A;  3SOG A;  1E9V A;  1LQ7 A;  5TKY A;  2EFK A;  2EFL A;  3CKD A;  2V0O A;  1R33 A;  3B52 X;  4EZP A;  3Q84 A;  4AZB A;  4AZ6 A;  2Z0V A;  4D8J A;  4M0M A;  3CZN A;  3CV5 A;  3SYV A;  3HAJ A;  4EZQ A;  1TQS A;  2RAK A;  2F7R A;  3RV1 A;  2X3W A;  2N3K A;  3DOB A;  4IM2 A;  3BLB A;  3UIT A;  2YKT A;  1QX1 A;  4EZN A;  4JWE A;  2V7Y A;  2ELB A;  2OBM A;  3F7W A;  4FL9 A;  4I43 A;  3SBT B;  2F18 A;  1TQV A;  2YIV X;  1ZWW A;  1GNT A;  1QWU A;  2YIA A;  3VEB A;  3N8E A;  2X5C A;  3KAW A;  3C7N B;  4HR1 B;  3DX4 A;  3D4Y A;  2NCZ A;  2RT6 A;  4R5J A;  3BVU A;  1URU A;  3O3M B;  4F00 A;  4JNE A;  2F7O A;  2ND0 A;  3QWE A;  4JN4 A;  4HYB A;  1TQU A;  4FM3 A;  3BUP A;  3EJT A;  4H8S A;  2OW6 A;  2WYI A;  3Q0K A;  5FIG A;  2FIC A;  3DQG A;  2YI9 A;  5E84 A;  3ER8 C;  3BVV A;  3DX1 A;  4AZ7 A;  3D2F A;  4R5I A;  2GF4 A;  4IM0 A;  1SU6 A;  3ERC C;  3HAI A;  3D4Z A;  2OBL A;  5C5B A;  1E1D A;  2Z0N A;  4IWP A;  3BVX A;  4G6Q A;  3D50 A;  4NPH A;  2GAF D;  1CKR A;  3T4A G;  4E3C A;  4WPC A;  4FZP A;  4WPE A;  1TQT A;  3BVT A;  1GNL A;  4AZC A;  2JNS A;  2X3X A;  4UDY X;  3T47 A;  1R5E A;  3DPO A;  4BNE A; 
#chains in the Genus database with same CATH homology
 3SBT B;  3VKH A;  1OA1 A;  3KDR A;  3KAV A;  4EZU A;  3ER9 B;  4WV5 A;  2EX3 B;  2YIV X;  2YIB A;  4EZR A;  1UPX A;  4ILH B;  1DKZ A;  1BPR A;  2YI8 A;  1Q5L A;  3DPQ A;  1GNT A;  4EZZ A;  3I01 A;  3O3N B;  2GA9 D;  1DG4 A;  4IWO A;  3H0X A;  1OAO A;  2YIA A;  4KIK B;  3VEB A;  3N8E A;  2X5C A;  3KAW A;  4JL9 A;  4KIK A;  3C7N B;  3I04 A;  1JQK A;  4HR1 B;  2KHO A;  4UDX X;  1SU7 A;  2LM0 A;  2NCZ A;  3A98 A;  3C7N A;  2RT6 A;  3DPP A;  4HR1 A;  2QFF A;  4R5J A;  4EZY A;  3T48 A;  3O3M B;  4R5G A;  4WV7 A;  3ZEF A;  4F00 A;  3FD9 A;  4JNE A;  2BPR A;  2ND0 A;  4IM3 A;  1DKY A;  1DKX A;  2WIN M;  4PO2 A;  4MQD A;  4R5L A;  4JLC A;  1E2U A;  4JN4 A;  2ND1 A;  4HYB A;  3L3O M;  4ILG A;  1W9M A;  3B53 X;  4JNF A;  4FM3 A;  4R5K A;  3RV0 A;  1ZYL A;  2QXL A;  1U00 A;  4H6I A;  1SU8 A;  5FIG A;  3VEA A;  3DQG A;  3OWG A;  4ILI A;  2YI9 A;  4HY9 A;  5E84 A;  3ER8 C;  1MJG A;  2Z8Y A;  4JWC A;  3GI7 A;  3D2E A;  3D2F A;  3OHX M;  4R5I A;  2EWF A;  4EZW A;  4IM0 A;  1SU6 A;  1OA0 A;  3T49 A;  1E9V A;  3ERC C;  4H6H A;  1SUF A;  4EZX A;  4EZT A;  2OBL A;  3SBS A;  5TKY A;  3QNJ A;  1E1D A;  4IWP A;  4F01 A;  3O3O B;  3B52 X;  4B9Q A;  4EZP A;  3I39 X;  4G6Q A;  3B51 X;  3ZED A;  4D8J A;  1YUW A;  4M0M A;  4NPH A;  3T46 A;  2GAF D;  4EZQ A;  2OP6 A;  1CKR A;  1GN9 A;  4IW0 A;  4E81 A;  3T4A G;  4EZV A;  3RV1 A;  4EZO A;  4E3C A;  7HSC A;  4EZS A;  2N3K A;  3DOB A;  4IM2 A;  4IWQ A;  3UIT A;  1GNL A;  4JWD A;  2JNS A;  3LMF A;  2PY6 A;  4UDY X;  3QA8 A;  4EZN A;  4JWE A;  3T47 A;  3DPO A;  4JWI A;  2V7Y A;  2OBM A;  3F7W A;  5FLE X;  4FL9 A;  4I43 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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