4EZOA

Crystal structure of the substrate binding domain of e.coli dnak in complex with pr-39 (residues 1 to 15)
Total Genus 61
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
211
structure length
211
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLM
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/peptide binding protein
molecule keywords Chaperone protein DnaK
publication title Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK.
pubmed doi rcsb
source organism Escherichia coli
total genus 61
structure length 211
sequence length 211
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4ezoA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4ezoA01
3L3OM 3T4AG 2OP6A 4F01A 4EZXA 3D2FA 3DPOA 1Q5LA 3QNJA 4H6HA 4B9QA 3T48A 4EZUA 4E81A 4JWIA 4PO2A 1DKZA 3OHXM 1DKYA 4JWCA 4JN4A 1BPRA 3N8EA 4WV7A 3DOBA 4EZRA 3DPQA 4FL9A 4R5IA 3D2EA 2WINM 4EZOA 3T46A 4EZPA 4EZYA 3T47A 4EZNA 4JNEA 4F00A 4WV5A 3T49A 5E84A 1CKRA 3DPPA 2QXLA 4R5JA 4EZZA 4R5GA 4JWEA 1YUWA 4R5LA 3DQGA 1DG4A 4H6IA 1U00A 2KHOA 1DKXA 4JWDA 5TKYA 4EZQA 4HYBA 4JNFA 4EZVA 3C7NA 3C7NB 3H0XA 7HSCA 4HY9A 4R5KA 2BPRA 4EZSA 4EZWA 4EZTA 2V7YA 2QFFA
chains in the Genus database with same CATH superfamily
3CZSA 4AZHA 3UITA 4NPHA 3ZEFA 3A98A 1HTYA 2WINM 5C5BA 1HXKA 2YLLA 2EWFA 1SUFA 3D52A 2D4CA 3BUBA 4IW0A 4ILIA 3L3OM 2MI7A 4F01A 3EJSA 3HAIA 3SOGA 3KAVA 3DDFA 4FL9A 2Z0NA 3EJTA 2NCZA 4JLCA 3D4ZA 1UPXA 4M0MA 4R5KA 4EZQA 3ERCC 3VEAA 1Q5LA 4EZUA 3D4YA 2RAKA 2YIVX 4EZPA 3T47A 2YL9A 1I49A 2LXYA 2GA9D 1U00A 4H6IA 2YIAA 4IWQA 2X3WA 2EX3B 1WDZA 1R34A 2YKTA 3Q84A 4AZCB 3QNJA 4JWCA 2PMRA 4EZRA 3ACOA 1E9VA 1OAOA 3L3PA 1MJGA 2QXLA 1TQWA 3CV5A 4JNFA 2V0OA 4IWPA 3C7NB 3SBTB 1SU8A 3EJUA 2OP6A 3DPOA 3B52X 2ZXQA 3HAJA 4I43A 1OA0A 3ER8C 3D2EA 3DX3A 3CZNA 1X03A 4BNEA 4WV5A 3BVXA 1TQSA 3QA8A 2Z0VA 3DQGA 1Y2OA 3ZEDA 3BUIA 2ELBA 3OK8A 4IM0A 1TQUA 1I4DA 1SU7A 1BPRA 2C08A 4MQDA 4UDXX 3DPQA 3I2WA 5C5BB 4AZ5A 3DX0A 4EZZA 1LQ7A 3BUDA 4HYBA 5FIGA 4EZSA 3EJQA 3F7WA 2YL5A 4EZXA 2F7RA 4DCNC 3O3MB 1O7DB 2JNSA 1JQKA 4ATMA 2F1AA 4KIKA 2ND0A 4NQIA 2YI8A 3CVRA 3KAWA 3OWGA 4IM2A 1PS3A 2F7PA 3DX1A 4EZWA 2EFLA 2RAIA 1O7DC 1URUA 4JWIA 2QKWA 2LM0A 3ABHA 4EZNA 3CAZA 3D51A 2F7OA 3M3WA 3DPPA 1W9MA 4R5JA 4R5LA 1SU6A 4DYLA 3O3NB 2GAFD 3CKDA 1ZYLA 1TQTA 3RV0A 3N8EA 4HR1A 1I4TA 4NSWA 4WPCA 4FZOA 3O3OB 1QX1A 2OO2A 3T49A 1CKRA 2KHOA 3BLBA 3H0XA 4AVMA 2Q12A 2QFFA 3BVTA 3D2FA 3EJPA 3OHXM 3DOBA 2X5CA 3QE6A 3SYVA 5E84A 2EFKA 2YL8A 2YI9A 3VEBA 3BUQA 2OBLA 4I1QA 4D8JA 1X04A 3RPMA 1DG4A 2RAJA 4FM3A 2X3VA 4E3CA 2OZNB 2Z0OA 4HY9A 3LVTA 3I04A 2ALWA 4ILGA 2RT6A 3T48A 2YIBA 2OW7A 4IM3A 3HAHA 4AKVA 3DDGA 2YL6A 2F1BA 4JWDA 4G6QA 4EZVA 1R33A 2WYHA 3I01A 4EZTA 2PY6A 4AZBA 4UDYX 4H6HA 3QWEA 3DX4A 3DYTA 3B51X 4KIKB 1I4LA 3Q0KA 4FZSA 3GI7A 4AZGA 3LLLA 2Q13A 3SBSA 1HWWA 2YLAA 2WYIA 2F7QA 4AZ6A 4B9QA 1DKYA 3LMFA 4WV7A 2X3XA 3BVUA 4EZOA 4EZYA 2Z8YA 1GNTA 4H8SA 3ER9B 1YUWA 1E2UA 3VKHA 4ILHB 3T4AG 4E81A 4HR1B 1OA1A 4R5IA 3KDRA 3PLTA 4JNEA 4F00A 2FYVA 2GF4A 1YWMA 3BUPA 4R5GA 5TKYA 3QNIA 7HSCA 3BVWA 3DX2A 2BPRA 3B53X 3RV1A 4AZCA 2N3KA 4PO2A 2ND1A 4JN4A 2D1LA 5FLEX 4AZIA 3FD9A 1ZWWA 2OBMA 1TQVA 2JNKA 5KBPA 3EJRA 3BVVA 1QWNA 4WPEA 1DKXA 3C7NA 4IWOA 3I39X 1R5EA 1E1DA 1DKZA 1GNLA 4JL9A 2F18A 2O0I1 2FICA 3T46A 2OW6A 3G9GA 3D50A 4JWEA 4FZPA 1GN9A 1QWUA 4AZ7A 2V7YA
chains in the Genus database with same CATH topology
2OP6A 3DPOA 3UITA 4NPHA 3ZEFA 3A98A 4B9QA 3RV0A 3B52X 1DKYA 3LMFA 3N8EA 4WV7A 4HR1A 4I43A 1OA0A 3ER8C 3D2EA 2WINM 4EZOA 4EZYA 2Z8YA 3O3OB 1GNTA 3ER9B 4WV5A 3T49A 2EWFA 1SUFA 1CKRA 3QA8A 1YUWA 3DQGA 1E2UA 2KHOA 3ZEDA 3H0XA 2V7YA 4IW0A 3VKHA 4ILIA 4ILHB 2QFFA 3L3OM 4IM0A 3T4AG 4F01A 3D2FA 1SU7A 3KAVA 4E81A 1BPRA 3OHXM 4HR1B 3DOBA 1OA1A 2X5CA 4UDXX 4MQDA 3DPQA 4FL9A 4R5IA 3KDRA 4JNEA 2NCZA 4F00A 5E84A 3VEBA 2YI9A 4JLCA 1UPXA 2OBLA 4EZZA 4R5GA 4D8JA 1DG4A 4FM3A 5TKYA 4E3CA 4M0MA 4HYBA 5FIGA 7HSCA 4HY9A 4R5KA 4EZSA 4EZQA 3ERCC 2BPRA 3B53X 3F7WA 3I04A 3RV1A 3VEAA 4EZXA 2N3KA 4ILGA 1Q5LA 2RT6A 3T48A 4EZUA 4PO2A 2ND1A 4JN4A 2YIBA 5FLEX 3O3MB 2YIVX 3FD9A 4IM3A 4EZPA 2JNSA 1JQKA 2OBMA 3T47A 4KIKA 2ND0A 2YI8A 3KAWA 1U00A 4H6IA 1DKXA 3OWGA 4G6QA 4JWDA 2YIAA 4IWQA 4IM2A 4EZVA 3C7NA 4IWOA 3I39X 3I01A 2EX3B 4EZWA 4EZTA 2PY6A 3SBSA 1E1DA 4UDYX 3QNJA 4H6HA 4JWIA 1DKZA 4JWCA 1GNLA 4JL9A 4EZRA 2LM0A 3T46A 1E9VA 4EZNA 1OAOA 3B51X 1MJGA 4KIKB 3DPPA 1W9MA 2QXLA 4R5JA 3GI7A 4JWEA 4R5LA 1SU6A 1GN9A 4JNFA 4IWPA 3C7NB 3O3NB 3SBTB 2GAFD 1SU8A 2GA9D 1ZYLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L3O M;  3T4A G;  2OP6 A;  4F01 A;  4EZX A;  3D2F A;  3DPO A;  1Q5L A;  3QNJ A;  4H6H A;  4B9Q A;  3T48 A;  4EZU A;  4E81 A;  4JWI A;  4PO2 A;  1DKZ A;  3OHX M;  1DKY A;  4JWC A;  4JN4 A;  1BPR A;  3N8E A;  4WV7 A;  3DOB A;  4EZR A;  3DPQ A;  4FL9 A;  4R5I A;  3D2E A;  2WIN M;  4EZO A;  3T46 A;  4EZP A;  4EZY A;  3T47 A;  4EZN A;  4JNE A;  4F00 A;  4WV5 A;  3T49 A;  5E84 A;  1CKR A;  3DPP A;  2QXL A;  4R5J A;  4EZZ A;  4R5G A;  4JWE A;  1YUW A;  4R5L A;  3DQG A;  1DG4 A;  4H6I A;  1U00 A;  2KHO A;  1DKX A;  4JWD A;  5TKY A;  4EZQ A;  4HYB A;  4JNF A;  4EZV A;  3C7N A;  3C7N B;  3H0X A;  7HSC A;  4HY9 A;  4R5K A;  2BPR A;  4EZS A;  4EZW A;  4EZT A;  2V7Y A;  2QFF A; 
#chains in the Genus database with same CATH topology
 3CZS A;  4AZH A;  3UIT A;  4NPH A;  3ZEF A;  3A98 A;  1HTY A;  2WIN M;  5C5B A;  1HXK A;  2YLL A;  2EWF A;  1SUF A;  3D52 A;  2D4C A;  3BUB A;  4IW0 A;  4ILI A;  3L3O M;  2MI7 A;  4F01 A;  3EJS A;  3HAI A;  3SOG A;  3KAV A;  3DDF A;  4FL9 A;  2Z0N A;  3EJT A;  2NCZ A;  4JLC A;  3D4Z A;  1UPX A;  4M0M A;  4R5K A;  4EZQ A;  3ERC C;  3VEA A;  1Q5L A;  4EZU A;  3D4Y A;  2RAK A;  2YIV X;  4EZP A;  3T47 A;  2YL9 A;  1I49 A;  2LXY A;  2GA9 D;  1U00 A;  4H6I A;  2YIA A;  4IWQ A;  2X3W A;  2EX3 B;  1WDZ A;  1R34 A;  2YKT A;  3Q84 A;  4AZC B;  3QNJ A;  4JWC A;  2PMR A;  4EZR A;  3ACO A;  1E9V A;  1OAO A;  3L3P A;  1MJG A;  2QXL A;  1TQW A;  3CV5 A;  4JNF A;  2V0O A;  4IWP A;  3C7N B;  3SBT B;  1SU8 A;  3EJU A;  2OP6 A;  3DPO A;  3B52 X;  2ZXQ A;  3HAJ A;  4I43 A;  1OA0 A;  3ER8 C;  3D2E A;  3DX3 A;  3CZN A;  1X03 A;  4BNE A;  4WV5 A;  3BVX A;  1TQS A;  3QA8 A;  2Z0V A;  3DQG A;  1Y2O A;  3ZED A;  3BUI A;  2ELB A;  3OK8 A;  4IM0 A;  1TQU A;  1I4D A;  1SU7 A;  1BPR A;  2C08 A;  4MQD A;  4UDX X;  3DPQ A;  3I2W A;  5C5B B;  4AZ5 A;  3DX0 A;  4EZZ A;  1LQ7 A;  3BUD A;  4HYB A;  5FIG A;  4EZS A;  3EJQ A;  3F7W A;  2YL5 A;  4EZX A;  2F7R A;  4DCN C;  3O3M B;  1O7D B;  2JNS A;  1JQK A;  4ATM A;  2F1A A;  4KIK A;  2ND0 A;  4NQI A;  2YI8 A;  3CVR A;  3KAW A;  3OWG A;  4IM2 A;  1PS3 A;  2F7P A;  3DX1 A;  4EZW A;  2EFL A;  2RAI A;  1O7D C;  1URU A;  4JWI A;  2QKW A;  2LM0 A;  3ABH A;  4EZN A;  3CAZ A;  3D51 A;  2F7O A;  3M3W A;  3DPP A;  1W9M A;  4R5J A;  4R5L A;  1SU6 A;  4DYL A;  3O3N B;  2GAF D;  3CKD A;  1ZYL A;  1TQT A;  3RV0 A;  3N8E A;  4HR1 A;  1I4T A;  4NSW A;  4WPC A;  4FZO A;  3O3O B;  1QX1 A;  2OO2 A;  3T49 A;  1CKR A;  2KHO A;  3BLB A;  3H0X A;  4AVM A;  2Q12 A;  2QFF A;  3BVT A;  3D2F A;  3EJP A;  3OHX M;  3DOB A;  2X5C A;  3QE6 A;  3SYV A;  5E84 A;  2EFK A;  2YL8 A;  2YI9 A;  3VEB A;  3BUQ A;  2OBL A;  4I1Q A;  4D8J A;  1X04 A;  3RPM A;  1DG4 A;  2RAJ A;  4FM3 A;  2X3V A;  4E3C A;  2OZN B;  2Z0O A;  4HY9 A;  3LVT A;  3I04 A;  2ALW A;  4ILG A;  2RT6 A;  3T48 A;  2YIB A;  2OW7 A;  4IM3 A;  3HAH A;  4AKV A;  3DDG A;  2YL6 A;  2F1B A;  4JWD A;  4G6Q A;  4EZV A;  1R33 A;  2WYH A;  3I01 A;  4EZT A;  2PY6 A;  4AZB A;  4UDY X;  4H6H A;  3QWE A;  3DX4 A;  3DYT A;  3B51 X;  4KIK B;  1I4L A;  3Q0K A;  4FZS A;  3GI7 A;  4AZG A;  3LLL A;  2Q13 A;  3SBS A;  1HWW A;  2YLA A;  2WYI A;  2F7Q A;  4AZ6 A;  4B9Q A;  1DKY A;  3LMF A;  4WV7 A;  2X3X A;  3BVU A;  4EZO A;  4EZY A;  2Z8Y A;  1GNT A;  4H8S A;  3ER9 B;  1YUW A;  1E2U A;  3VKH A;  4ILH B;  3T4A G;  4E81 A;  4HR1 B;  1OA1 A;  4R5I A;  3KDR A;  3PLT A;  4JNE A;  4F00 A;  2FYV A;  2GF4 A;  1YWM A;  3BUP A;  4R5G A;  5TKY A;  3QNI A;  7HSC A;  3BVW A;  3DX2 A;  2BPR A;  3B53 X;  3RV1 A;  4AZC A;  2N3K A;  4PO2 A;  2ND1 A;  4JN4 A;  2D1L A;  5FLE X;  4AZI A;  3FD9 A;  1ZWW A;  2OBM A;  1TQV A;  2JNK A;  5KBP A;  3EJR A;  3BVV A;  1QWN A;  4WPE A;  1DKX A;  3C7N A;  4IWO A;  3I39 X;  1R5E A;  1E1D A;  1DKZ A;  1GNL A;  4JL9 A;  2F18 A;  2O0I 1;  2FIC A;  3T46 A;  2OW6 A;  3G9G A;  3D50 A;  4JWE A;  4FZP A;  1GN9 A;  1QWU A;  4AZ7 A;  2V7Y A; 
#chains in the Genus database with same CATH homology
 2OP6 A;  3DPO A;  3UIT A;  4NPH A;  3ZEF A;  3A98 A;  4B9Q A;  3RV0 A;  3B52 X;  1DKY A;  3LMF A;  3N8E A;  4WV7 A;  4HR1 A;  4I43 A;  1OA0 A;  3ER8 C;  3D2E A;  2WIN M;  4EZO A;  4EZY A;  2Z8Y A;  3O3O B;  1GNT A;  3ER9 B;  4WV5 A;  3T49 A;  2EWF A;  1SUF A;  1CKR A;  3QA8 A;  1YUW A;  3DQG A;  1E2U A;  2KHO A;  3ZED A;  3H0X A;  2V7Y A;  4IW0 A;  3VKH A;  4ILI A;  4ILH B;  2QFF A;  3L3O M;  4IM0 A;  3T4A G;  4F01 A;  3D2F A;  1SU7 A;  3KAV A;  4E81 A;  1BPR A;  3OHX M;  4HR1 B;  3DOB A;  1OA1 A;  2X5C A;  4UDX X;  4MQD A;  3DPQ A;  4FL9 A;  4R5I A;  3KDR A;  4JNE A;  2NCZ A;  4F00 A;  5E84 A;  3VEB A;  2YI9 A;  4JLC A;  1UPX A;  2OBL A;  4EZZ A;  4R5G A;  4D8J A;  1DG4 A;  4FM3 A;  5TKY A;  4E3C A;  4M0M A;  4HYB A;  5FIG A;  7HSC A;  4HY9 A;  4R5K A;  4EZS A;  4EZQ A;  3ERC C;  2BPR A;  3B53 X;  3F7W A;  3I04 A;  3RV1 A;  3VEA A;  4EZX A;  2N3K A;  4ILG A;  1Q5L A;  2RT6 A;  3T48 A;  4EZU A;  4PO2 A;  2ND1 A;  4JN4 A;  2YIB A;  5FLE X;  3O3M B;  2YIV X;  3FD9 A;  4IM3 A;  4EZP A;  2JNS A;  1JQK A;  2OBM A;  3T47 A;  4KIK A;  2ND0 A;  2YI8 A;  3KAW A;  1U00 A;  4H6I A;  1DKX A;  3OWG A;  4G6Q A;  4JWD A;  2YIA A;  4IWQ A;  4IM2 A;  4EZV A;  3C7N A;  4IWO A;  3I39 X;  3I01 A;  2EX3 B;  4EZW A;  4EZT A;  2PY6 A;  3SBS A;  1E1D A;  4UDY X;  3QNJ A;  4H6H A;  4JWI A;  1DKZ A;  4JWC A;  1GNL A;  4JL9 A;  4EZR A;  2LM0 A;  3T46 A;  1E9V A;  4EZN A;  1OAO A;  3B51 X;  1MJG A;  4KIK B;  3DPP A;  1W9M A;  2QXL A;  4R5J A;  3GI7 A;  4JWE A;  4R5L A;  1SU6 A;  1GN9 A;  4JNF A;  4IWP A;  3C7N B;  3O3N B;  3SBT B;  2GAF D;  1SU8 A;  2GA9 D;  1ZYL A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...