1CKR | Genus

Total Genus 37

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	37
sequence length	159
structure length	159
Chain Sequence	SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 159 atoms

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159 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Chaperone
source organism	Rattus norvegicus
publication title	High-resolution solution structure of the 18 kDa substrate-binding domain of the mammalian chaperone protein Hsc70. pubmed doi rcsb
molecule keywords	HEAT SHOCK SUBSTRATE BINDING DOMAIN OF HSC-70
total genus	37
structure length	159
sequence length	159
ec nomenclature
pdb deposition date	1999-04-22

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.34.10	Mainly Beta	Sandwich	Substrate Binding Domain Of DNAk; Chain A, domain 1	Substrate Binding Domain Of DNAk; Chain A, domain 1	1ckrA00

1DKYA 4HY9A 4EZYA 4JNEA 4WV7A 3DOBA 4EZXA 4PO2A 4JNFA 1YUWA 3C7NB 4JWIA 1Q5LA 4R5KA 3H0XA 4EZVA 4HYBA 4EZZA 3DPOA 3D2FA 3DQGA 2OP6A 4R5LA 4F01A 2V7YA 4EZSA 5TKYA 4E81A 4WV5A 2KHOA 3DPPA 1U00A 4JWDA 4EZTA 1DKXA 1DG4A 4EZWA 4JWEA 4R5GA 4EZPA 4B9QA 1CKRA 3C7NA 4EZUA 4JWCA 3N8EA 3QNJA 4EZRA 4JN4A 4EZNA 3D2EA 5E84A 1BPRA 4F00A 2BPRA 4EZOA 4R5IA 3DPQA 4R5JA 1DKZA 4FL9A 7HSCA 4EZQA 2QXLA
chains in the Genus database with same CATH superfamily

1DKYA 4HY9A 4EZYA 4JNEA 4WV7A 3DOBA 4EZZA 4EZXA 4PO2A 4JNFA 1YUWA 3C7NB 4JWIA 1Q5LA 4R5KA 3H0XA 4EZVA 4HYBA 3ZEFA 3DPOA 3D2FA 3DQGA 2OP6A 4R5LA 4F01A 2V7YA 3SBTB 5TKYA 4EZSA 4E81A 4WV5A 2KHOA 3DPPA 1U00A 4JWDA 4EZTA 4ILIA 1DKXA 1DG4A 4EZWA 4JWEA 4R5GA 4EZPA 4B9QA 1CKRA 3C7NA 4EZUA 4JWCA 3N8EA 3QNJA 4I43A 3SBSA 4EZRA 4JN4A 4EZNA 3D2EA 5E84A 1BPRA 4F00A 2BPRA 4EZOA 4R5IA 4MQDA 3DPQA 4ILGA 4R5JA 1DKZA 4FL9A 4ILHB 7HSCA 4EZQA 2QXLA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1DKY A;  4HY9 A;  4EZY A;  4JNE A;  4WV7 A;  3DOB A;  4EZX A;  4PO2 A;  4JNF A;  1YUW A;  3C7N B;  4JWI A;  1Q5L A;  4R5K A;  3H0X A;  4EZV A;  4HYB A;  4EZZ A;  3DPO A;  3D2F A;  3DQG A;  2OP6 A;  4R5L A;  4F01 A;  2V7Y A;  4EZS A;  5TKY A;  4E81 A;  4WV5 A;  2KHO A;  3DPP A;  1U00 A;  4JWD A;  4EZT A;  1DKX A;  1DG4 A;  4EZW A;  4JWE A;  4R5G A;  4EZP A;  4B9Q A;  1CKR A;  3C7N A;  4EZU A;  4JWC A;  3N8E A;  3QNJ A;  4EZR A;  4JN4 A;  4EZN A;  3D2E A;  5E84 A;  1BPR A;  4F00 A;  2BPR A;  4EZO A;  4R5I A;  3DPQ A;  4R5J A;  1DKZ A;  4FL9 A;  7HSC A;  4EZQ A;  2QXL A; 
#chains in the Genus database with same CATH topology
 1DKY A;  4HY9 A;  4EZY A;  4JNE A;  4WV7 A;  3DOB A;  4EZZ A;  4EZX A;  4PO2 A;  4JNF A;  1YUW A;  3C7N B;  4JWI A;  1Q5L A;  4R5K A;  3H0X A;  4EZV A;  4HYB A;  3ZEF A;  3DPO A;  3D2F A;  3DQG A;  2OP6 A;  4R5L A;  4F01 A;  2V7Y A;  3SBT B;  5TKY A;  4EZS A;  4E81 A;  4WV5 A;  2KHO A;  3DPP A;  1U00 A;  4JWD A;  4EZT A;  4ILI A;  1DKX A;  1DG4 A;  4EZW A;  4JWE A;  4R5G A;  4EZP A;  4B9Q A;  1CKR A;  3C7N A;  4EZU A;  4JWC A;  3N8E A;  3QNJ A;  4I43 A;  3SBS A;  4EZR A;  4JN4 A;  4EZN A;  3D2E A;  5E84 A;  1BPR A;  4F00 A;  2BPR A;  4EZO A;  4R5I A;  4MQD A;  3DPQ A;  4ILG A;  4R5J A;  1DKZ A;  4FL9 A;  4ILH B;  7HSC A;  4EZQ A;  2QXL A; 
#chains in the Genus database with same CATH homology
 1DKY A;  4HY9 A;  4EZY A;  4JNE A;  4WV7 A;  3DOB A;  4EZZ A;  4EZX A;  4PO2 A;  4JNF A;  1YUW A;  3C7N B;  4JWI A;  1Q5L A;  4R5K A;  3H0X A;  4EZV A;  4HYB A;  3ZEF A;  3DPO A;  3D2F A;  3DQG A;  2OP6 A;  4R5L A;  4F01 A;  2V7Y A;  3SBT B;  5TKY A;  4EZS A;  4E81 A;  4WV5 A;  2KHO A;  3DPP A;  1U00 A;  4JWD A;  4EZT A;  4ILI A;  1DKX A;  1DG4 A;  4EZW A;  4JWE A;  4R5G A;  4EZP A;  4B9Q A;  1CKR A;  3C7N A;  4EZU A;  4JWC A;  3N8E A;  3QNJ A;  4I43 A;  3SBS A;  4EZR A;  4JN4 A;  4EZN A;  3D2E A;  5E84 A;  1BPR A;  4F00 A;  2BPR A;  4EZO A;  4R5I A;  4MQD A;  3DPQ A;  4ILG A;  4R5J A;  1DKZ A;  4FL9 A;  4ILH B;  7HSC A;  4EZQ A;  2QXL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1CKRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization