1DG4A

Nmr structure of the substrate binding domain of dnak in the apo form
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
111
structure length
111
Chain Sequence
LSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
publication title Structural insights into substrate binding by the molecular chaperone DnaK.
pubmed doi rcsb
molecule keywords DNAK
molecule tags Chaperone
total genus 15
structure length 111
sequence length 111
ec nomenclature
pdb deposition date 1999-11-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 1dg4A00
2KHOA 4JWDA 4EZOA 3C7NB 4E81A 1Q5LA 3D2EA 3DPOA 4R5GA 4F01A 4EZWA 4EZYA 1CKRA 4HY9A 4JNEA 4WV5A 4R5JA 4EZTA 3H0XA 3DQGA 4EZUA 4JN4A 2BPRA 5TKYA 1DKXA 1DG4A 4B9QA 4R5IA 4R5KA 4EZXA 3D2FA 4JWEA 5E84A 1YUWA 4EZZA 4F00A 4PO2A 3DPQA 4HYBA 4EZNA 2QXLA 3N8EA 4EZQA 4WV7A 3DPPA 4R5LA 1BPRA 2OP6A 3C7NA 2V7YA 1DKZA 4JWCA 1DKYA 4EZSA 4EZRA 4EZPA 4JNFA 4JWIA 4FL9A 7HSCA 4EZVA 3QNJA 3DOBA 1U00A
chains in the Genus database with same CATH superfamily
2KHOA 4ILIA 3SBSA 4JWDA 4EZOA 3C7NB 4E81A 1Q5LA 3D2EA 3DPOA 4R5GA 4F01A 4EZWA 4EZYA 1CKRA 4HY9A 4JNEA 4WV5A 4R5JA 4EZTA 3H0XA 3DQGA 4EZUA 4I43A 2BPRA 4JN4A 5TKYA 1DKXA 1DG4A 4B9QA 4ILHB 4ILGA 4R5IA 4R5KA 4EZXA 3D2FA 4JWEA 5E84A 1YUWA 4EZZA 4F00A 4PO2A 3DPQA 3SBTB 4HYBA 4EZNA 4MQDA 2QXLA 3N8EA 4EZQA 3ZEFA 4WV7A 3DPPA 4R5LA 1BPRA 2OP6A 3C7NA 2V7YA 1DKZA 4JWCA 1DKYA 4EZSA 4EZRA 4EZPA 4JNFA 4JWIA 4FL9A 7HSCA 4EZVA 3QNJA 3DOBA 1U00A
chains in the Genus database with same CATH topology
2KHOA 4ILIA 3SBSA 4JWDA 4EZOA 3C7NB 4E81A 1Q5LA 3D2EA 3DPOA 4R5GA 4F01A 4EZWA 4EZYA 1CKRA 4HY9A 4JNEA 4WV5A 4R5JA 4EZTA 3H0XA 3DQGA 4EZUA 4I43A 2BPRA 4JN4A 5TKYA 1DKXA 1DG4A 4B9QA 4ILHB 4ILGA 4R5IA 4R5KA 4EZXA 3D2FA 4JWEA 5E84A 1YUWA 4EZZA 4F00A 4PO2A 3DPQA 3SBTB 4HYBA 4EZNA 4MQDA 2QXLA 3N8EA 4EZQA 3ZEFA 4WV7A 3DPPA 4R5LA 1BPRA 2OP6A 3C7NA 2V7YA 1DKZA 4JWCA 1DKYA 4EZSA 4EZRA 4EZPA 4JNFA 4JWIA 4FL9A 7HSCA 4EZVA 3QNJA 3DOBA 1U00A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2KHO A;  4JWD A;  4EZO A;  3C7N B;  4E81 A;  1Q5L A;  3D2E A;  3DPO A;  4R5G A;  4F01 A;  4EZW A;  4EZY A;  1CKR A;  4HY9 A;  4JNE A;  4WV5 A;  4R5J A;  4EZT A;  3H0X A;  3DQG A;  4EZU A;  4JN4 A;  2BPR A;  5TKY A;  1DKX A;  1DG4 A;  4B9Q A;  4R5I A;  4R5K A;  4EZX A;  3D2F A;  4JWE A;  5E84 A;  1YUW A;  4EZZ A;  4F00 A;  4PO2 A;  3DPQ A;  4HYB A;  4EZN A;  2QXL A;  3N8E A;  4EZQ A;  4WV7 A;  3DPP A;  4R5L A;  1BPR A;  2OP6 A;  3C7N A;  2V7Y A;  1DKZ A;  4JWC A;  1DKY A;  4EZS A;  4EZR A;  4EZP A;  4JNF A;  4JWI A;  4FL9 A;  7HSC A;  4EZV A;  3QNJ A;  3DOB A;  1U00 A; 
#chains in the Genus database with same CATH topology
 2KHO A;  4ILI A;  3SBS A;  4JWD A;  4EZO A;  3C7N B;  4E81 A;  1Q5L A;  3D2E A;  3DPO A;  4R5G A;  4F01 A;  4EZW A;  4EZY A;  1CKR A;  4HY9 A;  4JNE A;  4WV5 A;  4R5J A;  4EZT A;  3H0X A;  3DQG A;  4EZU A;  4I43 A;  2BPR A;  4JN4 A;  5TKY A;  1DKX A;  1DG4 A;  4B9Q A;  4ILH B;  4ILG A;  4R5I A;  4R5K A;  4EZX A;  3D2F A;  4JWE A;  5E84 A;  1YUW A;  4EZZ A;  4F00 A;  4PO2 A;  3DPQ A;  3SBT B;  4HYB A;  4EZN A;  4MQD A;  2QXL A;  3N8E A;  4EZQ A;  3ZEF A;  4WV7 A;  3DPP A;  4R5L A;  1BPR A;  2OP6 A;  3C7N A;  2V7Y A;  1DKZ A;  4JWC A;  1DKY A;  4EZS A;  4EZR A;  4EZP A;  4JNF A;  4JWI A;  4FL9 A;  7HSC A;  4EZV A;  3QNJ A;  3DOB A;  1U00 A; 
#chains in the Genus database with same CATH homology
 2KHO A;  4ILI A;  3SBS A;  4JWD A;  4EZO A;  3C7N B;  4E81 A;  1Q5L A;  3D2E A;  3DPO A;  4R5G A;  4F01 A;  4EZW A;  4EZY A;  1CKR A;  4HY9 A;  4JNE A;  4WV5 A;  4R5J A;  4EZT A;  3H0X A;  3DQG A;  4EZU A;  4I43 A;  2BPR A;  4JN4 A;  5TKY A;  1DKX A;  1DG4 A;  4B9Q A;  4ILH B;  4ILG A;  4R5I A;  4R5K A;  4EZX A;  3D2F A;  4JWE A;  5E84 A;  1YUW A;  4EZZ A;  4F00 A;  4PO2 A;  3DPQ A;  3SBT B;  4HYB A;  4EZN A;  4MQD A;  2QXL A;  3N8E A;  4EZQ A;  3ZEF A;  4WV7 A;  3DPP A;  4R5L A;  1BPR A;  2OP6 A;  3C7N A;  2V7Y A;  1DKZ A;  4JWC A;  1DKY A;  4EZS A;  4EZR A;  4EZP A;  4JNF A;  4JWI A;  4FL9 A;  7HSC A;  4EZV A;  3QNJ A;  3DOB A;  1U00 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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