1PVMA

Crystal structure of a conserved cbs domain protein ta0289 of unknown function from thermoplasma acidophilum
Total Genus 50

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
178
structure length
178
Chain Sequence
MFMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASITDILLSHRTKDYQHLCPKCGVGVLEPVYNEKGEIKVFRCSNPACDYEE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S6 (112-117)TI1 (10-13)EMPTYS2 (36-40)S1 (15-17)TI3 (41-44)TI2 (17-20)AH1 (22-32)TI5 (66-69)TI4 (65-68)S3 (46-51)TIV1 (76-79)AH2 (52-59)AH5 (127-139)3H2 (60-62)S8 (163-169)3H3 (71-73)AH3 (88-98)S4 (81-83)TI6 (83-86)TI7 (107-110)S5 (102-106)AH4 (118-122)S7 (154-159)TI10 (147-150)TI9 (146-149)TIV2 (149-152)TI11 (159-162)3H1 (5-7)TI8 (122-125)TI12 (171-174)Updating...
connected with : NaN
molecule tags Structural genomics, unknown function
source organism Thermoplasma acidophilum dsm 1728
publication title Biochemical and structural characterization of a novel family of cystathionine beta-synthase domain proteins fused to a Zn ribbon-like domain
pubmed doi rcsb
molecule keywords conserved hypothetical protein Ta0289
total genus 50
structure length 178
sequence length 178
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
A PF09151 DUF1936 Domain of unknown function (DUF1936)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 1pvmA00
2QRDE 4O9KA 2OOXE 3LQNA 1XKFA 4GQYA 3PC4A 3ORGA 4HG0A 2D4ZA 3LFZA 4P1OA 3TE5C 4IYSA 1O50A 3KPCA 4GQWA 3KPDA 5K23C 3KH5A 2RIFA 2QREE 2P9MA 2RC3A 2RIHA 3HF7A 2UV4A 3OCMA 4ESYB 3DDJA 3SL7A 3GBYA 2UV6A 2EF7A 2PFIA 4GQVA 4DQWA 3L2BA 4IY4A 4ESYA 3FNAA 5K24C 3PC2A 5K22B 2NYEA 3FV6A 2YVYA 2YZQA 4UUUA 3I8NA 2ZY9A 5MMZA 3OI8A 3FWSA 4L3VA 4NOCA 2UV5A 1PVMA 2YVXA 4PCUA 3LHHA 2QLVC 3FHMA 3LV9A 2YZIA 4IY3A 5KS7A 4FRYA 4IY0A 3K6EA 3TDHC 4FXSA 3K2VA 5LXQA 4P1GA 4L27A 2UV7A 3FWRA 3PC3A 2NYCA 4L28A 2QH1A 1PBJA 3OCOA 4COOA 2QRCE 3KPBA 4L0DA 3T4NC 5IIPA 2QR1E 4IY2A 2YVZA 1YAVA 1Y5HA 2OOYE 2OUXA 5K25C 3KXRA 3L31A 2EMQA 2O16A
chains in the Genus database with same CATH superfamily
2QRDE 4O9KA 2OOXE 3LQNA 1XKFA 4GQYA 3PC4A 3ORGA 4HG0A 2D4ZA 3LFZA 4P1OA 3TE5C 4IYSA 1O50A 3KPCA 4GQWA 3KPDA 5K23C 3KH5A 2RIFA 2QREE 2P9MA 2RC3A 2RIHA 3HF7A 2UV4A 3OCMA 4ESYB 3DDJA 3SL7A 3GBYA 2UV6A 2EF7A 2PFIA 4GQVA 4DQWA 3L2BA 4IY4A 4ESYA 3FNAA 5K24C 3PC2A 5K22B 2NYEA 3FV6A 2YVYA 2YZQA 4UUUA 3I8NA 2ZY9A 5MMZA 3OI8A 3FWSA 4L3VA 4NOCA 2UV5A 1PVMA 2YVXA 4PCUA 3LHHA 2JA3A 2QLVC 3FHMA 3LV9A 2YZIA 4IY3A 5KS7A 4FRYA 2J9LA 4IY0A 3K6EA 3TDHC 4FXSA 3K2VA 5LXQA 4P1GA 4L27A 2UV7A 3FWRA 3PC3A 2NYCA 4L28A 2QH1A 1PBJA 3OCOA 4COOA 2QRCE 3KPBA 4L0DA 3T4NC 5IIPA 2QR1E 4IY2A 2YVZA 1YAVA 1Y5HA 2OOYE 2OUXA 5K25C 3KXRA 3L31A 2EMQA 2O16A
chains in the Genus database with same CATH topology
2QRDE 4O9KA 2OOXE 3LQNA 1XKFA 4GQYA 3PC4A 3ORGA 4HG0A 2D4ZA 3LFZA 4P1OA 3TE5C 4IYSA 1O50A 3KPCA 4GQWA 3KPDA 5K23C 3KH5A 2RIFA 2QREE 2P9MA 2RC3A 2RIHA 3HF7A 2UV4A 3OCMA 4ESYB 3DDJA 3SL7A 3GBYA 2UV6A 2EF7A 2PFIA 4GQVA 4DQWA 3L2BA 4IY4A 4ESYA 3FNAA 5K24C 3PC2A 5K22B 2NYEA 3FV6A 2YVYA 2YZQA 4UUUA 3I8NA 2ZY9A 5MMZA 3OI8A 3FWSA 4L3VA 4NOCA 2UV5A 1PVMA 2YVXA 4PCUA 3LHHA 2JA3A 2QLVC 3FHMA 3LV9A 2YZIA 4IY3A 5KS7A 4FRYA 2J9LA 4IY0A 3K6EA 3TDHC 4FXSA 3K2VA 5LXQA 4P1GA 4L27A 2UV7A 3FWRA 3PC3A 2NYCA 4L28A 2QH1A 1PBJA 3OCOA 4COOA 2QRCE 3KPBA 4L0DA 3T4NC 5IIPA 2QR1E 4IY2A 2YVZA 1YAVA 1Y5HA 2OOYE 2OUXA 5K25C 3KXRA 3L31A 2EMQA 2O16A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QRD E;  4O9K A;  2OOX E;  3LQN A;  1XKF A;  4GQY A;  3PC4 A;  3ORG A;  4HG0 A;  2D4Z A;  3LFZ A;  4P1O A;  3TE5 C;  4IYS A;  1O50 A;  3KPC A;  4GQW A;  3KPD A;  5K23 C;  3KH5 A;  2RIF A;  2QRE E;  2P9M A;  2RC3 A;  2RIH A;  3HF7 A;  2UV4 A;  3OCM A;  4ESY B;  3DDJ A;  3SL7 A;  3GBY A;  2UV6 A;  2EF7 A;  2PFI A;  4GQV A;  4DQW A;  3L2B A;  4IY4 A;  4ESY A;  3FNA A;  5K24 C;  3PC2 A;  5K22 B;  2NYE A;  3FV6 A;  2YVY A;  2YZQ A;  4UUU A;  3I8N A;  2ZY9 A;  5MMZ A;  3OI8 A;  3FWS A;  4L3V A;  4NOC A;  2UV5 A;  1PVM A;  2YVX A;  4PCU A;  3LHH A;  2QLV C;  3FHM A;  3LV9 A;  2YZI A;  4IY3 A;  5KS7 A;  4FRY A;  4IY0 A;  3K6E A;  3TDH C;  4FXS A;  3K2V A;  5LXQ A;  4P1G A;  4L27 A;  2UV7 A;  3FWR A;  3PC3 A;  2NYC A;  4L28 A;  2QH1 A;  1PBJ A;  3OCO A;  4COO A;  2QRC E;  3KPB A;  4L0D A;  3T4N C;  5IIP A;  2QR1 E;  4IY2 A;  2YVZ A;  1YAV A;  1Y5H A;  2OOY E;  2OUX A;  5K25 C;  3KXR A;  3L31 A;  2EMQ A;  2O16 A; 
#chains in the Genus database with same CATH topology
 2QRD E;  4O9K A;  2OOX E;  3LQN A;  1XKF A;  4GQY A;  3PC4 A;  3ORG A;  4HG0 A;  2D4Z A;  3LFZ A;  4P1O A;  3TE5 C;  4IYS A;  1O50 A;  3KPC A;  4GQW A;  3KPD A;  5K23 C;  3KH5 A;  2RIF A;  2QRE E;  2P9M A;  2RC3 A;  2RIH A;  3HF7 A;  2UV4 A;  3OCM A;  4ESY B;  3DDJ A;  3SL7 A;  3GBY A;  2UV6 A;  2EF7 A;  2PFI A;  4GQV A;  4DQW A;  3L2B A;  4IY4 A;  4ESY A;  3FNA A;  5K24 C;  3PC2 A;  5K22 B;  2NYE A;  3FV6 A;  2YVY A;  2YZQ A;  4UUU A;  3I8N A;  2ZY9 A;  5MMZ A;  3OI8 A;  3FWS A;  4L3V A;  4NOC A;  2UV5 A;  1PVM A;  2YVX A;  4PCU A;  3LHH A;  2JA3 A;  2QLV C;  3FHM A;  3LV9 A;  2YZI A;  4IY3 A;  5KS7 A;  4FRY A;  2J9L A;  4IY0 A;  3K6E A;  3TDH C;  4FXS A;  3K2V A;  5LXQ A;  4P1G A;  4L27 A;  2UV7 A;  3FWR A;  3PC3 A;  2NYC A;  4L28 A;  2QH1 A;  1PBJ A;  3OCO A;  4COO A;  2QRC E;  3KPB A;  4L0D A;  3T4N C;  5IIP A;  2QR1 E;  4IY2 A;  2YVZ A;  1YAV A;  1Y5H A;  2OOY E;  2OUX A;  5K25 C;  3KXR A;  3L31 A;  2EMQ A;  2O16 A; 
#chains in the Genus database with same CATH homology
 2QRD E;  4O9K A;  2OOX E;  3LQN A;  1XKF A;  4GQY A;  3PC4 A;  3ORG A;  4HG0 A;  2D4Z A;  3LFZ A;  4P1O A;  3TE5 C;  4IYS A;  1O50 A;  3KPC A;  4GQW A;  3KPD A;  5K23 C;  3KH5 A;  2RIF A;  2QRE E;  2P9M A;  2RC3 A;  2RIH A;  3HF7 A;  2UV4 A;  3OCM A;  4ESY B;  3DDJ A;  3SL7 A;  3GBY A;  2UV6 A;  2EF7 A;  2PFI A;  4GQV A;  4DQW A;  3L2B A;  4IY4 A;  4ESY A;  3FNA A;  5K24 C;  3PC2 A;  5K22 B;  2NYE A;  3FV6 A;  2YVY A;  2YZQ A;  4UUU A;  3I8N A;  2ZY9 A;  5MMZ A;  3OI8 A;  3FWS A;  4L3V A;  4NOC A;  2UV5 A;  1PVM A;  2YVX A;  4PCU A;  3LHH A;  2JA3 A;  2QLV C;  3FHM A;  3LV9 A;  2YZI A;  4IY3 A;  5KS7 A;  4FRY A;  2J9L A;  4IY0 A;  3K6E A;  3TDH C;  4FXS A;  3K2V A;  5LXQ A;  4P1G A;  4L27 A;  2UV7 A;  3FWR A;  3PC3 A;  2NYC A;  4L28 A;  2QH1 A;  1PBJ A;  3OCO A;  4COO A;  2QRC E;  3KPB A;  4L0D A;  3T4N C;  5IIP A;  2QR1 E;  4IY2 A;  2YVZ A;  1YAV A;  1Y5H A;  2OOY E;  2OUX A;  5K25 C;  3KXR A;  3L31 A;  2EMQ A;  2O16 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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