4FRYA

The structure of a putative signal-transduction protein with cbs domains from burkholderia ambifaria mc40-6
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
136
structure length
136
Chain Sequence
TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIADQQFTIS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords Putative signal-transduction protein with CBS domains
publication title Combining functional and structural genomics to sample the essential Burkholderia structome.
pubmed doi rcsb
source organism Burkholderia ambifaria
total genus 32
structure length 136
sequence length 136
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 4fryA00
2QH1A 5K25C 4IY4A 2RIFA 4ESYA 4L0DA 3K2VA 4UUUA 3I8NA 2QRCE 5K22B 3T4NC 3FHMA 5MMZA 2UV7A 5LXQA 4P1GA 1XKFA 4IY2A 4L3VA 4L28A 2RC3A 3GBYA 3KXRA 2YZQA 3FNAA 3DDJA 3OI8A 2D4ZA 4IY3A 4PCUA 3L31A 4NOCA 3KPCA 2RIHA 3PC2A 1O50A 3PC4A 2QR1E 2UV6A 4FRYA 2EF7A 3LFZA 3HF7A 2OOXE 2OOYE 2EMQA 3OCOA 3KPBA 4ESYB 3FWRA 2UV5A 3ORGA 3SL7A 4L27A 3FV6A 2NYEA 2YVZA 4GQVA 3OCMA 4COOA 4HG0A 5K23C 1PBJA 2OUXA 3KPDA 2PFIA 4GQWA 2ZY9A 2QREE 4P1OA 3KH5A 1YAVA 4IYSA 3L2BA 5K24C 3LHHA 3PC3A 2UV4A 5IIPA 3K6EA 4FXSA 2YVXA 2YZIA 4IY0A 5KS7A 2QLVC 2YVYA 2QRDE 1PVMA 3TDHC 2NYCA 2P9MA 4DQWA 4GQYA 3TE5C 2O16A 1Y5HA 4O9KA 3FWSA 3LQNA 3LV9A
chains in the Genus database with same CATH superfamily
2QH1A 5K25C 4IY4A 2RIFA 4ESYA 4L0DA 3K2VA 4UUUA 3I8NA 2QRCE 5K22B 3T4NC 3FHMA 5MMZA 2UV7A 5LXQA 4P1GA 1XKFA 4IY2A 4L3VA 4L28A 2RC3A 3GBYA 3KXRA 2YZQA 3FNAA 3DDJA 3OI8A 2D4ZA 4IY3A 4PCUA 3L31A 4NOCA 3KPCA 2RIHA 3PC2A 1O50A 3PC4A 2QR1E 2UV6A 4FRYA 2EF7A 3LFZA 3HF7A 2OOXE 2OOYE 2EMQA 3OCOA 3KPBA 4ESYB 3FWRA 2UV5A 3ORGA 3SL7A 4L27A 3FV6A 2NYEA 2YVZA 4GQVA 3OCMA 4COOA 4HG0A 5K23C 1PBJA 2OUXA 3KPDA 2PFIA 2JA3A 4GQWA 2ZY9A 2QREE 4P1OA 3KH5A 1YAVA 4IYSA 3L2BA 5K24C 3LHHA 3PC3A 2UV4A 5IIPA 3K6EA 4FXSA 2YVXA 2YZIA 4IY0A 5KS7A 2QLVC 2YVYA 2QRDE 1PVMA 3TDHC 2NYCA 2P9MA 4DQWA 4GQYA 3TE5C 2J9LA 2O16A 1Y5HA 4O9KA 3FWSA 3LQNA 3LV9A
chains in the Genus database with same CATH topology
2QH1A 5K25C 4IY4A 2RIFA 4ESYA 4L0DA 3K2VA 4UUUA 3I8NA 2QRCE 5K22B 3T4NC 3FHMA 5MMZA 2UV7A 5LXQA 4P1GA 1XKFA 4IY2A 4L3VA 4L28A 2RC3A 3GBYA 3KXRA 2YZQA 3FNAA 3DDJA 3OI8A 2D4ZA 4IY3A 4PCUA 3L31A 4NOCA 3KPCA 2RIHA 3PC2A 1O50A 3PC4A 2QR1E 2UV6A 4FRYA 2EF7A 3LFZA 3HF7A 2OOXE 2OOYE 2EMQA 3OCOA 3KPBA 4ESYB 3FWRA 2UV5A 3ORGA 3SL7A 4L27A 3FV6A 2NYEA 2YVZA 4GQVA 3OCMA 4COOA 4HG0A 5K23C 1PBJA 2OUXA 3KPDA 2PFIA 2JA3A 4GQWA 2ZY9A 2QREE 4P1OA 3KH5A 1YAVA 4IYSA 3L2BA 5K24C 3LHHA 3PC3A 2UV4A 5IIPA 3K6EA 4FXSA 2YVXA 2YZIA 4IY0A 5KS7A 2QLVC 2YVYA 2QRDE 1PVMA 3TDHC 2NYCA 2P9MA 4DQWA 4GQYA 3TE5C 2J9LA 2O16A 1Y5HA 4O9KA 3FWSA 3LQNA 3LV9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QH1 A;  5K25 C;  4IY4 A;  2RIF A;  4ESY A;  4L0D A;  3K2V A;  4UUU A;  3I8N A;  2QRC E;  5K22 B;  3T4N C;  3FHM A;  5MMZ A;  2UV7 A;  5LXQ A;  4P1G A;  1XKF A;  4IY2 A;  4L3V A;  4L28 A;  2RC3 A;  3GBY A;  3KXR A;  2YZQ A;  3FNA A;  3DDJ A;  3OI8 A;  2D4Z A;  4IY3 A;  4PCU A;  3L31 A;  4NOC A;  3KPC A;  2RIH A;  3PC2 A;  1O50 A;  3PC4 A;  2QR1 E;  2UV6 A;  4FRY A;  2EF7 A;  3LFZ A;  3HF7 A;  2OOX E;  2OOY E;  2EMQ A;  3OCO A;  3KPB A;  4ESY B;  3FWR A;  2UV5 A;  3ORG A;  3SL7 A;  4L27 A;  3FV6 A;  2NYE A;  2YVZ A;  4GQV A;  3OCM A;  4COO A;  4HG0 A;  5K23 C;  1PBJ A;  2OUX A;  3KPD A;  2PFI A;  4GQW A;  2ZY9 A;  2QRE E;  4P1O A;  3KH5 A;  1YAV A;  4IYS A;  3L2B A;  5K24 C;  3LHH A;  3PC3 A;  2UV4 A;  5IIP A;  3K6E A;  4FXS A;  2YVX A;  2YZI A;  4IY0 A;  5KS7 A;  2QLV C;  2YVY A;  2QRD E;  1PVM A;  3TDH C;  2NYC A;  2P9M A;  4DQW A;  4GQY A;  3TE5 C;  2O16 A;  1Y5H A;  4O9K A;  3FWS A;  3LQN A;  3LV9 A; 
#chains in the Genus database with same CATH topology
 2QH1 A;  5K25 C;  4IY4 A;  2RIF A;  4ESY A;  4L0D A;  3K2V A;  4UUU A;  3I8N A;  2QRC E;  5K22 B;  3T4N C;  3FHM A;  5MMZ A;  2UV7 A;  5LXQ A;  4P1G A;  1XKF A;  4IY2 A;  4L3V A;  4L28 A;  2RC3 A;  3GBY A;  3KXR A;  2YZQ A;  3FNA A;  3DDJ A;  3OI8 A;  2D4Z A;  4IY3 A;  4PCU A;  3L31 A;  4NOC A;  3KPC A;  2RIH A;  3PC2 A;  1O50 A;  3PC4 A;  2QR1 E;  2UV6 A;  4FRY A;  2EF7 A;  3LFZ A;  3HF7 A;  2OOX E;  2OOY E;  2EMQ A;  3OCO A;  3KPB A;  4ESY B;  3FWR A;  2UV5 A;  3ORG A;  3SL7 A;  4L27 A;  3FV6 A;  2NYE A;  2YVZ A;  4GQV A;  3OCM A;  4COO A;  4HG0 A;  5K23 C;  1PBJ A;  2OUX A;  3KPD A;  2PFI A;  2JA3 A;  4GQW A;  2ZY9 A;  2QRE E;  4P1O A;  3KH5 A;  1YAV A;  4IYS A;  3L2B A;  5K24 C;  3LHH A;  3PC3 A;  2UV4 A;  5IIP A;  3K6E A;  4FXS A;  2YVX A;  2YZI A;  4IY0 A;  5KS7 A;  2QLV C;  2YVY A;  2QRD E;  1PVM A;  3TDH C;  2NYC A;  2P9M A;  4DQW A;  4GQY A;  3TE5 C;  2J9L A;  2O16 A;  1Y5H A;  4O9K A;  3FWS A;  3LQN A;  3LV9 A; 
#chains in the Genus database with same CATH homology
 2QH1 A;  5K25 C;  4IY4 A;  2RIF A;  4ESY A;  4L0D A;  3K2V A;  4UUU A;  3I8N A;  2QRC E;  5K22 B;  3T4N C;  3FHM A;  5MMZ A;  2UV7 A;  5LXQ A;  4P1G A;  1XKF A;  4IY2 A;  4L3V A;  4L28 A;  2RC3 A;  3GBY A;  3KXR A;  2YZQ A;  3FNA A;  3DDJ A;  3OI8 A;  2D4Z A;  4IY3 A;  4PCU A;  3L31 A;  4NOC A;  3KPC A;  2RIH A;  3PC2 A;  1O50 A;  3PC4 A;  2QR1 E;  2UV6 A;  4FRY A;  2EF7 A;  3LFZ A;  3HF7 A;  2OOX E;  2OOY E;  2EMQ A;  3OCO A;  3KPB A;  4ESY B;  3FWR A;  2UV5 A;  3ORG A;  3SL7 A;  4L27 A;  3FV6 A;  2NYE A;  2YVZ A;  4GQV A;  3OCM A;  4COO A;  4HG0 A;  5K23 C;  1PBJ A;  2OUX A;  3KPD A;  2PFI A;  2JA3 A;  4GQW A;  2ZY9 A;  2QRE E;  4P1O A;  3KH5 A;  1YAV A;  4IYS A;  3L2B A;  5K24 C;  3LHH A;  3PC3 A;  2UV4 A;  5IIP A;  3K6E A;  4FXS A;  2YVX A;  2YZI A;  4IY0 A;  5KS7 A;  2QLV C;  2YVY A;  2QRD E;  1PVM A;  3TDH C;  2NYC A;  2P9M A;  4DQW A;  4GQY A;  3TE5 C;  2J9L A;  2O16 A;  1Y5H A;  4O9K A;  3FWS A;  3LQN A;  3LV9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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