1PVMA

Crystal structure of a conserved cbs domain protein ta0289 of unknown function from thermoplasma acidophilum
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
178
structure length
178
Chain Sequence
MFMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASITDILLSHRTKDYQHLCPKCGVGVLEPVYNEKGEIKVFRCSNPACDYEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords conserved hypothetical protein Ta0289
publication title Biochemical and structural characterization of a novel family of cystathionine beta-synthase domain proteins fused to a Zn ribbon-like domain
pubmed doi rcsb
source organism Thermoplasma acidophilum dsm 1728
total genus 50
structure length 178
sequence length 178
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
A PF09151 DUF1936 Domain of unknown function (DUF1936)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 1pvmA00
2RIFA 1XKFA 2P9MA 4P1OA 3KPBA 2O16A 2QRDE 4UUUA 3LHHA 3K6EA 5K25C 4L0DA 1PBJA 4IY4A 2QR1E 2PFIA 2YVZA 3FWRA 2UV7A 3L31A 3T4NC 3KPDA 3FNAA 3PC4A 4IYSA 2ZY9A 5K22B 3FWSA 4ESYB 2UV5A 2NYEA 3L2BA 5MMZA 2RC3A 4P1GA 2EMQA 3HF7A 2RIHA 4NOCA 2QREE 4L28A 3LV9A 3OCMA 4IY2A 3FV6A 3KPCA 3GBYA 2QLVC 3KH5A 2EF7A 2YZQA 3FHMA 4GQWA 5K24C 1PVMA 3OCOA 1Y5HA 5IIPA 4IY3A 4L3VA 5K23C 2D4ZA 2YVYA 2QH1A 1YAVA 2QRCE 3TE5C 4ESYA 2UV4A 3OI8A 4O9KA 3LQNA 3LFZA 4DQWA 2OOYE 3TDHC 5LXQA 2OOXE 3PC2A 4L27A 2YZIA 3DDJA 3I8NA 4GQVA 3KXRA 2YVXA 3SL7A 3K2VA 4PCUA 4IY0A 5KS7A 3PC3A 2NYCA 2UV6A 4COOA 1O50A 3ORGA 2OUXA 4HG0A 4FRYA 4FXSA 4GQYA
chains in the Genus database with same CATH superfamily
2RIFA 1XKFA 2P9MA 4P1OA 3KPBA 2O16A 2QRDE 4UUUA 3LHHA 3K6EA 5K25C 4L0DA 1PBJA 4IY4A 2QR1E 2PFIA 2J9LA 2YVZA 3FWRA 2UV7A 3L31A 3T4NC 3KPDA 3FNAA 3PC4A 4IYSA 2ZY9A 5K22B 3FWSA 4ESYB 2UV5A 2NYEA 3L2BA 5MMZA 2RC3A 4P1GA 2EMQA 3HF7A 2RIHA 4NOCA 2QREE 4L28A 3LV9A 3OCMA 4IY2A 3FV6A 3KPCA 2JA3A 3GBYA 2QLVC 3KH5A 2EF7A 2YZQA 3FHMA 4GQWA 5K24C 1PVMA 3OCOA 1Y5HA 5IIPA 4IY3A 4L3VA 5K23C 2D4ZA 2YVYA 2QH1A 1YAVA 2QRCE 3TE5C 4ESYA 2UV4A 3OI8A 4O9KA 3LQNA 3LFZA 4DQWA 2OOYE 3TDHC 5LXQA 2OOXE 3PC2A 4L27A 2YZIA 3DDJA 3I8NA 4GQVA 3KXRA 2YVXA 3SL7A 3K2VA 4PCUA 4IY0A 5KS7A 3PC3A 2NYCA 2UV6A 4COOA 1O50A 3ORGA 2OUXA 4HG0A 4FRYA 4FXSA 4GQYA
chains in the Genus database with same CATH topology
2RIFA 1XKFA 2P9MA 4P1OA 3KPBA 2O16A 2QRDE 4UUUA 3LHHA 3K6EA 5K25C 4L0DA 1PBJA 4IY4A 2QR1E 2PFIA 2J9LA 2YVZA 3FWRA 2UV7A 3L31A 3T4NC 3KPDA 3FNAA 3PC4A 4IYSA 2ZY9A 5K22B 3FWSA 4ESYB 2UV5A 2NYEA 3L2BA 5MMZA 2RC3A 4P1GA 2EMQA 3HF7A 2RIHA 4NOCA 2QREE 4L28A 3LV9A 3OCMA 4IY2A 3FV6A 3KPCA 2JA3A 3GBYA 2QLVC 3KH5A 2EF7A 2YZQA 3FHMA 4GQWA 5K24C 1PVMA 3OCOA 1Y5HA 5IIPA 4IY3A 4L3VA 5K23C 2D4ZA 2YVYA 2QH1A 1YAVA 2QRCE 3TE5C 4ESYA 2UV4A 3OI8A 4O9KA 3LQNA 3LFZA 4DQWA 2OOYE 3TDHC 5LXQA 2OOXE 3PC2A 4L27A 2YZIA 3DDJA 3I8NA 4GQVA 3KXRA 2YVXA 3SL7A 3K2VA 4PCUA 4IY0A 5KS7A 3PC3A 2NYCA 2UV6A 4COOA 1O50A 3ORGA 2OUXA 4HG0A 4FRYA 4FXSA 4GQYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RIF A;  1XKF A;  2P9M A;  4P1O A;  3KPB A;  2O16 A;  2QRD E;  4UUU A;  3LHH A;  3K6E A;  5K25 C;  4L0D A;  1PBJ A;  4IY4 A;  2QR1 E;  2PFI A;  2YVZ A;  3FWR A;  2UV7 A;  3L31 A;  3T4N C;  3KPD A;  3FNA A;  3PC4 A;  4IYS A;  2ZY9 A;  5K22 B;  3FWS A;  4ESY B;  2UV5 A;  2NYE A;  3L2B A;  5MMZ A;  2RC3 A;  4P1G A;  2EMQ A;  3HF7 A;  2RIH A;  4NOC A;  2QRE E;  4L28 A;  3LV9 A;  3OCM A;  4IY2 A;  3FV6 A;  3KPC A;  3GBY A;  2QLV C;  3KH5 A;  2EF7 A;  2YZQ A;  3FHM A;  4GQW A;  5K24 C;  1PVM A;  3OCO A;  1Y5H A;  5IIP A;  4IY3 A;  4L3V A;  5K23 C;  2D4Z A;  2YVY A;  2QH1 A;  1YAV A;  2QRC E;  3TE5 C;  4ESY A;  2UV4 A;  3OI8 A;  4O9K A;  3LQN A;  3LFZ A;  4DQW A;  2OOY E;  3TDH C;  5LXQ A;  2OOX E;  3PC2 A;  4L27 A;  2YZI A;  3DDJ A;  3I8N A;  4GQV A;  3KXR A;  2YVX A;  3SL7 A;  3K2V A;  4PCU A;  4IY0 A;  5KS7 A;  3PC3 A;  2NYC A;  2UV6 A;  4COO A;  1O50 A;  3ORG A;  2OUX A;  4HG0 A;  4FRY A;  4FXS A;  4GQY A; 
#chains in the Genus database with same CATH topology
 2RIF A;  1XKF A;  2P9M A;  4P1O A;  3KPB A;  2O16 A;  2QRD E;  4UUU A;  3LHH A;  3K6E A;  5K25 C;  4L0D A;  1PBJ A;  4IY4 A;  2QR1 E;  2PFI A;  2J9L A;  2YVZ A;  3FWR A;  2UV7 A;  3L31 A;  3T4N C;  3KPD A;  3FNA A;  3PC4 A;  4IYS A;  2ZY9 A;  5K22 B;  3FWS A;  4ESY B;  2UV5 A;  2NYE A;  3L2B A;  5MMZ A;  2RC3 A;  4P1G A;  2EMQ A;  3HF7 A;  2RIH A;  4NOC A;  2QRE E;  4L28 A;  3LV9 A;  3OCM A;  4IY2 A;  3FV6 A;  3KPC A;  2JA3 A;  3GBY A;  2QLV C;  3KH5 A;  2EF7 A;  2YZQ A;  3FHM A;  4GQW A;  5K24 C;  1PVM A;  3OCO A;  1Y5H A;  5IIP A;  4IY3 A;  4L3V A;  5K23 C;  2D4Z A;  2YVY A;  2QH1 A;  1YAV A;  2QRC E;  3TE5 C;  4ESY A;  2UV4 A;  3OI8 A;  4O9K A;  3LQN A;  3LFZ A;  4DQW A;  2OOY E;  3TDH C;  5LXQ A;  2OOX E;  3PC2 A;  4L27 A;  2YZI A;  3DDJ A;  3I8N A;  4GQV A;  3KXR A;  2YVX A;  3SL7 A;  3K2V A;  4PCU A;  4IY0 A;  5KS7 A;  3PC3 A;  2NYC A;  2UV6 A;  4COO A;  1O50 A;  3ORG A;  2OUX A;  4HG0 A;  4FRY A;  4FXS A;  4GQY A; 
#chains in the Genus database with same CATH homology
 2RIF A;  1XKF A;  2P9M A;  4P1O A;  3KPB A;  2O16 A;  2QRD E;  4UUU A;  3LHH A;  3K6E A;  5K25 C;  4L0D A;  1PBJ A;  4IY4 A;  2QR1 E;  2PFI A;  2J9L A;  2YVZ A;  3FWR A;  2UV7 A;  3L31 A;  3T4N C;  3KPD A;  3FNA A;  3PC4 A;  4IYS A;  2ZY9 A;  5K22 B;  3FWS A;  4ESY B;  2UV5 A;  2NYE A;  3L2B A;  5MMZ A;  2RC3 A;  4P1G A;  2EMQ A;  3HF7 A;  2RIH A;  4NOC A;  2QRE E;  4L28 A;  3LV9 A;  3OCM A;  4IY2 A;  3FV6 A;  3KPC A;  2JA3 A;  3GBY A;  2QLV C;  3KH5 A;  2EF7 A;  2YZQ A;  3FHM A;  4GQW A;  5K24 C;  1PVM A;  3OCO A;  1Y5H A;  5IIP A;  4IY3 A;  4L3V A;  5K23 C;  2D4Z A;  2YVY A;  2QH1 A;  1YAV A;  2QRC E;  3TE5 C;  4ESY A;  2UV4 A;  3OI8 A;  4O9K A;  3LQN A;  3LFZ A;  4DQW A;  2OOY E;  3TDH C;  5LXQ A;  2OOX E;  3PC2 A;  4L27 A;  2YZI A;  3DDJ A;  3I8N A;  4GQV A;  3KXR A;  2YVX A;  3SL7 A;  3K2V A;  4PCU A;  4IY0 A;  5KS7 A;  3PC3 A;  2NYC A;  2UV6 A;  4COO A;  1O50 A;  3ORG A;  2OUX A;  4HG0 A;  4FRY A;  4FXS A;  4GQY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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