2OOYE

Crystal structure of the adenylate sensor from amp-activated protein kinase complexed with atp
Total Genus 88
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
333
structure length
333
Chain Sequence
MDVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTPGVPEQTDNFESAV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords SNF1-like protein kinase ssp2
publication title Crystal structures of the adenylate sensor from fission yeast AMP-activated protein kinase.
pubmed doi rcsb
source organism Schizosaccharomyces pombe
total genus 88
structure length 333
sequence length 333
chains with identical sequence G
ec nomenclature
pdb deposition date 2007-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 2ooyE02
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 2ooyE01
3LHHA 2YZQA 4IY4A 2UV4A 1PVMA 2UV7A 5LXQA 3K2VA 4HG0A 2YVYA 3LFZA 3OCMA 3K6EA 3TDHC 3T4NC 2QH1A 2OUXA 2D4ZA 4L28A 1PBJA 3ORGA 4L27A 2EF7A 4GQWA 1O50A 3FHMA 4COOA 2QRDE 2RIHA 4UUUA 4IYSA 3FWRA 3KXRA 4L3VA 4IY2A 4P1OA 2UV5A 4FRYA 4PCUA 4IY0A 2QREE 3KH5A 3PC4A 3TE5C 5K24C 5MMZA 3L2BA 3KPBA 1YAVA 4FXSA 3LV9A 3PC3A 3OCOA 2QRCE 2EMQA 4ESYB 5KS7A 2RIFA 3FV6A 3PC2A 4GQVA 3KPCA 2YVXA 5K25C 2NYCA 3DDJA 4NOCA 3SL7A 2UV6A 4IY3A 2YVZA 2O16A 2P9MA 1XKFA 2NYEA 4L0DA 3LQNA 2OOYE 2QR1E 4O9KA 5IIPA 4GQYA 4DQWA 2PFIA 3KPDA 4ESYA 3GBYA 3FWSA 2QLVC 3I8NA 5K22B 3HF7A 5K23C 3FNAA 2OOXE 3OI8A 4P1GA 1Y5HA 2YZIA 2RC3A 2ZY9A 3L31A
chains in the Genus database with same CATH superfamily
3LHHA 2YZQA 4IY4A 2UV4A 1PVMA 2UV7A 5LXQA 3K2VA 4HG0A 2YVYA 3LFZA 3OCMA 3K6EA 3TDHC 3T4NC 2QH1A 2OUXA 2D4ZA 4L28A 1PBJA 3ORGA 4L27A 2EF7A 4GQWA 1O50A 3FHMA 4COOA 2QRDE 2RIHA 4UUUA 4IYSA 3FWRA 3KXRA 4L3VA 4IY2A 4P1OA 2UV5A 4FRYA 4PCUA 4IY0A 2QREE 3KH5A 3PC4A 3TE5C 5K24C 5MMZA 3L2BA 3KPBA 1YAVA 4FXSA 3LV9A 3PC3A 2JA3A 3OCOA 2QRCE 2EMQA 4ESYB 5KS7A 2RIFA 3FV6A 3PC2A 4GQVA 3KPCA 2YVXA 5K25C 2NYCA 3DDJA 4NOCA 3SL7A 2UV6A 4IY3A 2YVZA 2O16A 2P9MA 1XKFA 2NYEA 4L0DA 3LQNA 2OOYE 2QR1E 4O9KA 5IIPA 4GQYA 4DQWA 2PFIA 3KPDA 4ESYA 3GBYA 3FWSA 2QLVC 3I8NA 5K22B 3HF7A 5K23C 3FNAA 2OOXE 3OI8A 4P1GA 1Y5HA 2YZIA 2RC3A 2ZY9A 3L31A 2J9LA
chains in the Genus database with same CATH topology
3LHHA 2YZQA 4IY4A 2UV4A 1PVMA 2UV7A 5LXQA 3K2VA 4HG0A 2YVYA 3LFZA 3OCMA 3K6EA 3TDHC 3T4NC 2QH1A 2OUXA 2D4ZA 4L28A 1PBJA 3ORGA 4L27A 2EF7A 4GQWA 1O50A 3FHMA 4COOA 2QRDE 2RIHA 4UUUA 4IYSA 3FWRA 3KXRA 4L3VA 4IY2A 4P1OA 2UV5A 4FRYA 4PCUA 4IY0A 2QREE 3KH5A 3PC4A 3TE5C 5K24C 5MMZA 3L2BA 3KPBA 1YAVA 4FXSA 3LV9A 3PC3A 2JA3A 3OCOA 2QRCE 2EMQA 4ESYB 5KS7A 2RIFA 3FV6A 3PC2A 4GQVA 3KPCA 2YVXA 5K25C 2NYCA 3DDJA 4NOCA 3SL7A 2UV6A 4IY3A 2YVZA 2O16A 2P9MA 1XKFA 2NYEA 4L0DA 3LQNA 2OOYE 2QR1E 4O9KA 5IIPA 4GQYA 4DQWA 2PFIA 3KPDA 4ESYA 3GBYA 3FWSA 2QLVC 3I8NA 5K22B 3HF7A 5K23C 3FNAA 2OOXE 3OI8A 4P1GA 1Y5HA 2YZIA 2RC3A 2ZY9A 3L31A 2J9LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LHH A;  2YZQ A;  4IY4 A;  2UV4 A;  1PVM A;  2UV7 A;  5LXQ A;  3K2V A;  4HG0 A;  2YVY A;  3LFZ A;  3OCM A;  3K6E A;  3TDH C;  3T4N C;  2QH1 A;  2OUX A;  2D4Z A;  4L28 A;  1PBJ A;  3ORG A;  4L27 A;  2EF7 A;  4GQW A;  1O50 A;  3FHM A;  4COO A;  2QRD E;  2RIH A;  4UUU A;  4IYS A;  3FWR A;  3KXR A;  4L3V A;  4IY2 A;  4P1O A;  2UV5 A;  4FRY A;  4PCU A;  4IY0 A;  2QRE E;  3KH5 A;  3PC4 A;  3TE5 C;  5K24 C;  5MMZ A;  3L2B A;  3KPB A;  1YAV A;  4FXS A;  3LV9 A;  3PC3 A;  3OCO A;  2QRC E;  2EMQ A;  4ESY B;  5KS7 A;  2RIF A;  3FV6 A;  3PC2 A;  4GQV A;  3KPC A;  2YVX A;  5K25 C;  2NYC A;  3DDJ A;  4NOC A;  3SL7 A;  2UV6 A;  4IY3 A;  2YVZ A;  2O16 A;  2P9M A;  1XKF A;  2NYE A;  4L0D A;  3LQN A;  2OOY E;  2QR1 E;  4O9K A;  5IIP A;  4GQY A;  4DQW A;  2PFI A;  3KPD A;  4ESY A;  3GBY A;  3FWS A;  2QLV C;  3I8N A;  5K22 B;  3HF7 A;  5K23 C;  3FNA A;  2OOX E;  3OI8 A;  4P1G A;  1Y5H A;  2YZI A;  2RC3 A;  2ZY9 A;  3L31 A; 
#chains in the Genus database with same CATH topology
 3LHH A;  2YZQ A;  4IY4 A;  2UV4 A;  1PVM A;  2UV7 A;  5LXQ A;  3K2V A;  4HG0 A;  2YVY A;  3LFZ A;  3OCM A;  3K6E A;  3TDH C;  3T4N C;  2QH1 A;  2OUX A;  2D4Z A;  4L28 A;  1PBJ A;  3ORG A;  4L27 A;  2EF7 A;  4GQW A;  1O50 A;  3FHM A;  4COO A;  2QRD E;  2RIH A;  4UUU A;  4IYS A;  3FWR A;  3KXR A;  4L3V A;  4IY2 A;  4P1O A;  2UV5 A;  4FRY A;  4PCU A;  4IY0 A;  2QRE E;  3KH5 A;  3PC4 A;  3TE5 C;  5K24 C;  5MMZ A;  3L2B A;  3KPB A;  1YAV A;  4FXS A;  3LV9 A;  3PC3 A;  2JA3 A;  3OCO A;  2QRC E;  2EMQ A;  4ESY B;  5KS7 A;  2RIF A;  3FV6 A;  3PC2 A;  4GQV A;  3KPC A;  2YVX A;  5K25 C;  2NYC A;  3DDJ A;  4NOC A;  3SL7 A;  2UV6 A;  4IY3 A;  2YVZ A;  2O16 A;  2P9M A;  1XKF A;  2NYE A;  4L0D A;  3LQN A;  2OOY E;  2QR1 E;  4O9K A;  5IIP A;  4GQY A;  4DQW A;  2PFI A;  3KPD A;  4ESY A;  3GBY A;  3FWS A;  2QLV C;  3I8N A;  5K22 B;  3HF7 A;  5K23 C;  3FNA A;  2OOX E;  3OI8 A;  4P1G A;  1Y5H A;  2YZI A;  2RC3 A;  2ZY9 A;  3L31 A;  2J9L A; 
#chains in the Genus database with same CATH homology
 3LHH A;  2YZQ A;  4IY4 A;  2UV4 A;  1PVM A;  2UV7 A;  5LXQ A;  3K2V A;  4HG0 A;  2YVY A;  3LFZ A;  3OCM A;  3K6E A;  3TDH C;  3T4N C;  2QH1 A;  2OUX A;  2D4Z A;  4L28 A;  1PBJ A;  3ORG A;  4L27 A;  2EF7 A;  4GQW A;  1O50 A;  3FHM A;  4COO A;  2QRD E;  2RIH A;  4UUU A;  4IYS A;  3FWR A;  3KXR A;  4L3V A;  4IY2 A;  4P1O A;  2UV5 A;  4FRY A;  4PCU A;  4IY0 A;  2QRE E;  3KH5 A;  3PC4 A;  3TE5 C;  5K24 C;  5MMZ A;  3L2B A;  3KPB A;  1YAV A;  4FXS A;  3LV9 A;  3PC3 A;  2JA3 A;  3OCO A;  2QRC E;  2EMQ A;  4ESY B;  5KS7 A;  2RIF A;  3FV6 A;  3PC2 A;  4GQV A;  3KPC A;  2YVX A;  5K25 C;  2NYC A;  3DDJ A;  4NOC A;  3SL7 A;  2UV6 A;  4IY3 A;  2YVZ A;  2O16 A;  2P9M A;  1XKF A;  2NYE A;  4L0D A;  3LQN A;  2OOY E;  2QR1 E;  4O9K A;  5IIP A;  4GQY A;  4DQW A;  2PFI A;  3KPD A;  4ESY A;  3GBY A;  3FWS A;  2QLV C;  3I8N A;  5K22 B;  3HF7 A;  5K23 C;  3FNA A;  2OOX E;  3OI8 A;  4P1G A;  1Y5H A;  2YZI A;  2RC3 A;  2ZY9 A;  3L31 A;  2J9L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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