1Q5L | Genus

Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	7
sequence length	115
structure length	115
Chain Sequence	DVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 115 atoms

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115 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Chaperone
source organism	Escherichia coli
publication title	The solution structure of the bacterial HSP70 chaperone protein domain DnaK(393-507) in complex with the peptide NRLLLTG. pubmed doi rcsb
molecule keywords	Chaperone protein dnaK
total genus	7
structure length	115
sequence length	115
ec nomenclature
pdb deposition date	2003-08-08

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.34.10	Mainly Beta	Sandwich	Substrate Binding Domain Of DNAk; Chain A, domain 1	Substrate Binding Domain Of DNAk; Chain A, domain 1	1q5lA00

4JNFA 2KHOA 1Q5LA 4WV5A 2OP6A 4F01A 3DPOA 4FL9A 4R5GA 4EZOA 3DPPA 4EZZA 4JN4A 4EZXA 4R5IA 3DPQA 1U00A 3N8EA 4EZRA 4F00A 4JWIA 4EZQA 1DG4A 3H0XA 1DKYA 4HYBA 4WV7A 3D2FA 5TKYA 4EZNA 3D2EA 3C7NB 1BPRA 4EZPA 4EZWA 2QXLA 3C7NA 4E81A 4EZYA 4R5KA 7HSCA 4EZSA 4JWDA 4EZVA 3QNJA 4JWCA 4EZTA 1DKXA 4JWEA 1CKRA 4R5JA 4PO2A 4HY9A 1DKZA 3DQGA 1YUWA 2BPRA 2V7YA 4EZUA 4B9QA 3DOBA 4R5LA 5E84A 4JNEA
chains in the Genus database with same CATH superfamily

4JNFA 2KHOA 1Q5LA 4WV5A 2OP6A 4F01A 3DPOA 4FL9A 4R5GA 4EZOA 3DPPA 4EZZA 4I43A 4JN4A 4EZXA 3ZEFA 4R5IA 3DPQA 1U00A 3N8EA 4EZRA 4ILIA 4ILGA 4F00A 4JWIA 4EZQA 1DG4A 3H0XA 1DKYA 4ILHB 4HYBA 4WV7A 3SBTB 3D2FA 5TKYA 4EZNA 3D2EA 3C7NB 1BPRA 4EZPA 4EZWA 2QXLA 3C7NA 4E81A 4EZYA 4R5KA 7HSCA 4EZSA 4JWDA 3SBSA 4EZVA 3QNJA 4JWCA 4EZTA 1DKXA 4JWEA 1CKRA 4R5JA 4PO2A 4MQDA 4HY9A 1DKZA 3DQGA 1YUWA 2BPRA 2V7YA 4EZUA 4B9QA 3DOBA 4R5LA 5E84A 4JNEA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4JNF A;  2KHO A;  1Q5L A;  4WV5 A;  2OP6 A;  4F01 A;  3DPO A;  4FL9 A;  4R5G A;  4EZO A;  3DPP A;  4EZZ A;  4JN4 A;  4EZX A;  4R5I A;  3DPQ A;  1U00 A;  3N8E A;  4EZR A;  4F00 A;  4JWI A;  4EZQ A;  1DG4 A;  3H0X A;  1DKY A;  4HYB A;  4WV7 A;  3D2F A;  5TKY A;  4EZN A;  3D2E A;  3C7N B;  1BPR A;  4EZP A;  4EZW A;  2QXL A;  3C7N A;  4E81 A;  4EZY A;  4R5K A;  7HSC A;  4EZS A;  4JWD A;  4EZV A;  3QNJ A;  4JWC A;  4EZT A;  1DKX A;  4JWE A;  1CKR A;  4R5J A;  4PO2 A;  4HY9 A;  1DKZ A;  3DQG A;  1YUW A;  2BPR A;  2V7Y A;  4EZU A;  4B9Q A;  3DOB A;  4R5L A;  5E84 A;  4JNE A; 
#chains in the Genus database with same CATH topology
 4JNF A;  2KHO A;  1Q5L A;  4WV5 A;  2OP6 A;  4F01 A;  3DPO A;  4FL9 A;  4R5G A;  4EZO A;  3DPP A;  4EZZ A;  4I43 A;  4JN4 A;  4EZX A;  3ZEF A;  4R5I A;  3DPQ A;  1U00 A;  3N8E A;  4EZR A;  4ILI A;  4ILG A;  4F00 A;  4JWI A;  4EZQ A;  1DG4 A;  3H0X A;  1DKY A;  4ILH B;  4HYB A;  4WV7 A;  3SBT B;  3D2F A;  5TKY A;  4EZN A;  3D2E A;  3C7N B;  1BPR A;  4EZP A;  4EZW A;  2QXL A;  3C7N A;  4E81 A;  4EZY A;  4R5K A;  7HSC A;  4EZS A;  4JWD A;  3SBS A;  4EZV A;  3QNJ A;  4JWC A;  4EZT A;  1DKX A;  4JWE A;  1CKR A;  4R5J A;  4PO2 A;  4MQD A;  4HY9 A;  1DKZ A;  3DQG A;  1YUW A;  2BPR A;  2V7Y A;  4EZU A;  4B9Q A;  3DOB A;  4R5L A;  5E84 A;  4JNE A; 
#chains in the Genus database with same CATH homology
 4JNF A;  2KHO A;  1Q5L A;  4WV5 A;  2OP6 A;  4F01 A;  3DPO A;  4FL9 A;  4R5G A;  4EZO A;  3DPP A;  4EZZ A;  4I43 A;  4JN4 A;  4EZX A;  3ZEF A;  4R5I A;  3DPQ A;  1U00 A;  3N8E A;  4EZR A;  4ILI A;  4ILG A;  4F00 A;  4JWI A;  4EZQ A;  1DG4 A;  3H0X A;  1DKY A;  4ILH B;  4HYB A;  4WV7 A;  3SBT B;  3D2F A;  5TKY A;  4EZN A;  3D2E A;  3C7N B;  1BPR A;  4EZP A;  4EZW A;  2QXL A;  3C7N A;  4E81 A;  4EZY A;  4R5K A;  7HSC A;  4EZS A;  4JWD A;  3SBS A;  4EZV A;  3QNJ A;  4JWC A;  4EZT A;  1DKX A;  4JWE A;  1CKR A;  4R5J A;  4PO2 A;  4MQD A;  4HY9 A;  1DKZ A;  3DQG A;  1YUW A;  2BPR A;  2V7Y A;  4EZU A;  4B9Q A;  3DOB A;  4R5L A;  5E84 A;  4JNE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1Q5LA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization