2NYCA

Crystal structure of the bateman2 domain of yeast snf4
Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
140
structure length
130
Chain Sequence
THFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGLSLSVGEALMRRSYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding
source organism Saccharomyces cerevisiae
publication title Structure of the Bateman2 domain of yeast Snf4: dimeric association and relevance for AMP binding.
pubmed doi rcsb
molecule keywords Nuclear protein SNF4
total genus 36
structure length 130
sequence length 140
ec nomenclature
pdb deposition date 2006-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 2nycA00
2D4ZA 3FV6A 3TDHC 5K22B 3HF7A 4P1GA 3KH5A 2EMQA 4P1OA 2NYEA 2QRCE 2O16A 2QR1E 2UV4A 3LFZA 1YAVA 3L2BA 4IY4A 3KPCA 3OI8A 4FRYA 4L28A 3LV9A 2YZIA 4FXSA 4IY2A 4DQWA 2YVXA 1Y5HA 4HG0A 3GBYA 2YVZA 3KPDA 2PFIA 2QH1A 5IIPA 3FHMA 5K24C 3PC4A 3L31A 3FNAA 4L27A 3KPBA 1O50A 4L3VA 4GQWA 2YZQA 5LXQA 3FWSA 2RIFA 3I8NA 3K6EA 1PBJA 3K2VA 2QLVC 2QRDE 4IY3A 3PC2A 4ESYB 2ZY9A 1XKFA 1PVMA 4IYSA 3PC3A 2NYCA 3SL7A 4PCUA 3FWRA 2UV7A 2OOXE 3T4NC 4L0DA 2EF7A 3DDJA 4GQVA 3LQNA 5K25C 3OCOA 3KXRA 5K23C 3OCMA 4UUUA 2P9MA 2RC3A 2RIHA 4IY0A 2QREE 4ESYA 4NOCA 4O9KA 2OOYE 5KS7A 2UV6A 3ORGA 2OUXA 2YVYA 3LHHA 4GQYA 4COOA 5MMZA 3TE5C 2UV5A
chains in the Genus database with same CATH superfamily
2D4ZA 3FV6A 3TDHC 5K22B 3HF7A 4P1GA 3KH5A 2EMQA 4P1OA 2NYEA 2QRCE 2O16A 2QR1E 2UV4A 3LFZA 1YAVA 3L2BA 4IY4A 3KPCA 3OI8A 4FRYA 4L28A 3LV9A 2YZIA 4FXSA 4IY2A 4DQWA 2YVXA 1Y5HA 4HG0A 3GBYA 2YVZA 3KPDA 2PFIA 2QH1A 5IIPA 3FHMA 5K24C 3PC4A 3L31A 3FNAA 4L27A 3KPBA 1O50A 4L3VA 4GQWA 2YZQA 5LXQA 3FWSA 2RIFA 3I8NA 3K6EA 1PBJA 3K2VA 2QLVC 2QRDE 4IY3A 3PC2A 4ESYB 2ZY9A 1XKFA 1PVMA 4IYSA 2JA3A 3PC3A 2NYCA 3SL7A 4PCUA 3FWRA 2UV7A 2OOXE 3T4NC 4L0DA 2J9LA 2EF7A 3DDJA 4GQVA 3LQNA 5K25C 3OCOA 3KXRA 5K23C 3OCMA 4UUUA 2P9MA 2RC3A 2RIHA 4IY0A 2QREE 4ESYA 4NOCA 4O9KA 2OOYE 5KS7A 2UV6A 3ORGA 2OUXA 2YVYA 3LHHA 4GQYA 4COOA 5MMZA 3TE5C 2UV5A
chains in the Genus database with same CATH topology
2D4ZA 3FV6A 3TDHC 5K22B 3HF7A 4P1GA 3KH5A 2EMQA 4P1OA 2NYEA 2QRCE 2O16A 2QR1E 2UV4A 3LFZA 1YAVA 3L2BA 4IY4A 3KPCA 3OI8A 4FRYA 4L28A 3LV9A 2YZIA 4FXSA 4IY2A 4DQWA 2YVXA 1Y5HA 4HG0A 3GBYA 2YVZA 3KPDA 2PFIA 2QH1A 5IIPA 3FHMA 5K24C 3PC4A 3L31A 3FNAA 4L27A 3KPBA 1O50A 4L3VA 4GQWA 2YZQA 5LXQA 3FWSA 2RIFA 3I8NA 3K6EA 1PBJA 3K2VA 2QLVC 2QRDE 4IY3A 3PC2A 4ESYB 2ZY9A 1XKFA 1PVMA 4IYSA 2JA3A 3PC3A 2NYCA 3SL7A 4PCUA 3FWRA 2UV7A 2OOXE 3T4NC 4L0DA 2J9LA 2EF7A 3DDJA 4GQVA 3LQNA 5K25C 3OCOA 3KXRA 5K23C 3OCMA 4UUUA 2P9MA 2RC3A 2RIHA 4IY0A 2QREE 4ESYA 4NOCA 4O9KA 2OOYE 5KS7A 2UV6A 3ORGA 2OUXA 2YVYA 3LHHA 4GQYA 4COOA 5MMZA 3TE5C 2UV5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D4Z A;  3FV6 A;  3TDH C;  5K22 B;  3HF7 A;  4P1G A;  3KH5 A;  2EMQ A;  4P1O A;  2NYE A;  2QRC E;  2O16 A;  2QR1 E;  2UV4 A;  3LFZ A;  1YAV A;  3L2B A;  4IY4 A;  3KPC A;  3OI8 A;  4FRY A;  4L28 A;  3LV9 A;  2YZI A;  4FXS A;  4IY2 A;  4DQW A;  2YVX A;  1Y5H A;  4HG0 A;  3GBY A;  2YVZ A;  3KPD A;  2PFI A;  2QH1 A;  5IIP A;  3FHM A;  5K24 C;  3PC4 A;  3L31 A;  3FNA A;  4L27 A;  3KPB A;  1O50 A;  4L3V A;  4GQW A;  2YZQ A;  5LXQ A;  3FWS A;  2RIF A;  3I8N A;  3K6E A;  1PBJ A;  3K2V A;  2QLV C;  2QRD E;  4IY3 A;  3PC2 A;  4ESY B;  2ZY9 A;  1XKF A;  1PVM A;  4IYS A;  3PC3 A;  2NYC A;  3SL7 A;  4PCU A;  3FWR A;  2UV7 A;  2OOX E;  3T4N C;  4L0D A;  2EF7 A;  3DDJ A;  4GQV A;  3LQN A;  5K25 C;  3OCO A;  3KXR A;  5K23 C;  3OCM A;  4UUU A;  2P9M A;  2RC3 A;  2RIH A;  4IY0 A;  2QRE E;  4ESY A;  4NOC A;  4O9K A;  2OOY E;  5KS7 A;  2UV6 A;  3ORG A;  2OUX A;  2YVY A;  3LHH A;  4GQY A;  4COO A;  5MMZ A;  3TE5 C;  2UV5 A; 
#chains in the Genus database with same CATH topology
 2D4Z A;  3FV6 A;  3TDH C;  5K22 B;  3HF7 A;  4P1G A;  3KH5 A;  2EMQ A;  4P1O A;  2NYE A;  2QRC E;  2O16 A;  2QR1 E;  2UV4 A;  3LFZ A;  1YAV A;  3L2B A;  4IY4 A;  3KPC A;  3OI8 A;  4FRY A;  4L28 A;  3LV9 A;  2YZI A;  4FXS A;  4IY2 A;  4DQW A;  2YVX A;  1Y5H A;  4HG0 A;  3GBY A;  2YVZ A;  3KPD A;  2PFI A;  2QH1 A;  5IIP A;  3FHM A;  5K24 C;  3PC4 A;  3L31 A;  3FNA A;  4L27 A;  3KPB A;  1O50 A;  4L3V A;  4GQW A;  2YZQ A;  5LXQ A;  3FWS A;  2RIF A;  3I8N A;  3K6E A;  1PBJ A;  3K2V A;  2QLV C;  2QRD E;  4IY3 A;  3PC2 A;  4ESY B;  2ZY9 A;  1XKF A;  1PVM A;  4IYS A;  2JA3 A;  3PC3 A;  2NYC A;  3SL7 A;  4PCU A;  3FWR A;  2UV7 A;  2OOX E;  3T4N C;  4L0D A;  2J9L A;  2EF7 A;  3DDJ A;  4GQV A;  3LQN A;  5K25 C;  3OCO A;  3KXR A;  5K23 C;  3OCM A;  4UUU A;  2P9M A;  2RC3 A;  2RIH A;  4IY0 A;  2QRE E;  4ESY A;  4NOC A;  4O9K A;  2OOY E;  5KS7 A;  2UV6 A;  3ORG A;  2OUX A;  2YVY A;  3LHH A;  4GQY A;  4COO A;  5MMZ A;  3TE5 C;  2UV5 A; 
#chains in the Genus database with same CATH homology
 2D4Z A;  3FV6 A;  3TDH C;  5K22 B;  3HF7 A;  4P1G A;  3KH5 A;  2EMQ A;  4P1O A;  2NYE A;  2QRC E;  2O16 A;  2QR1 E;  2UV4 A;  3LFZ A;  1YAV A;  3L2B A;  4IY4 A;  3KPC A;  3OI8 A;  4FRY A;  4L28 A;  3LV9 A;  2YZI A;  4FXS A;  4IY2 A;  4DQW A;  2YVX A;  1Y5H A;  4HG0 A;  3GBY A;  2YVZ A;  3KPD A;  2PFI A;  2QH1 A;  5IIP A;  3FHM A;  5K24 C;  3PC4 A;  3L31 A;  3FNA A;  4L27 A;  3KPB A;  1O50 A;  4L3V A;  4GQW A;  2YZQ A;  5LXQ A;  3FWS A;  2RIF A;  3I8N A;  3K6E A;  1PBJ A;  3K2V A;  2QLV C;  2QRD E;  4IY3 A;  3PC2 A;  4ESY B;  2ZY9 A;  1XKF A;  1PVM A;  4IYS A;  2JA3 A;  3PC3 A;  2NYC A;  3SL7 A;  4PCU A;  3FWR A;  2UV7 A;  2OOX E;  3T4N C;  4L0D A;  2J9L A;  2EF7 A;  3DDJ A;  4GQV A;  3LQN A;  5K25 C;  3OCO A;  3KXR A;  5K23 C;  3OCM A;  4UUU A;  2P9M A;  2RC3 A;  2RIH A;  4IY0 A;  2QRE E;  4ESY A;  4NOC A;  4O9K A;  2OOY E;  5KS7 A;  2UV6 A;  3ORG A;  2OUX A;  2YVY A;  3LHH A;  4GQY A;  4COO A;  5MMZ A;  3TE5 C;  2UV5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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