2P9MA

Crystal structure of conserved hypothetical protein mj0922 from methanocaldococcus jannaschii dsm 2661
Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
133
structure length
128
Chain Sequence
LKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTKDVITIHEDASILEAIKKMDISIINQLPVVDKNNKLVGIISDGDIIRTISKI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (5-8)EMPTY3H1 (10-12)S5 (111-115)3H2 (33-37)TIV1 (15-18)S2 (41-45)TI4 (70-73)S1 (21-22)TI2 (22-25)S3 (51-56)TI3 (46-49)TIV2 (80-83)TIV3 (100-108)S4 (86-87)TI5 (87-90)AH3 (92-98)TI6 (116-119)AH1 (27-32)AH2 (57-65)S6 (121-126)Updating...
connected with : NaN
molecule tags Structural genomics, unknown function
source organism Methanocaldococcus jannaschii dsm 2661
publication title Crystal structure of conserved hypothetical protein MJ0922 from Methanocaldococcus jannaschii DSM 2661
rcsb
molecule keywords Hypothetical protein MJ0922
total genus 28
structure length 128
sequence length 133
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 2p9mA00
2D4ZA 3LFZA 4COOA 3FNAA 5K23C 4IY2A 2UV5A 2OUXA 3OCOA 4DQWA 3SL7A 4L3VA 3TDHC 4P1GA 3KXRA 5K25C 3KPBA 3KPDA 3L2BA 3K6EA 2O16A 2QRCE 1PVMA 3FWSA 2YZIA 3PC3A 1O50A 2EF7A 2NYEA 3PC4A 2QLVC 3GBYA 3ORGA 4GQVA 3FWRA 4GQYA 4O9KA 4UUUA 1Y5HA 3TE5C 2RIFA 3FV6A 2QR1E 5KS7A 4PCUA 3FHMA 2RC3A 4FXSA 2QRDE 4GQWA 5LXQA 1YAVA 5MMZA 2ZY9A 3LHHA 2YVXA 4IYSA 2NYCA 1XKFA 4ESYA 2UV7A 3OI8A 4HG0A 5K24C 2RIHA 4IY0A 3T4NC 3KH5A 2EMQA 2QH1A 1PBJA 4IY3A 2UV6A 3OCMA 3LV9A 3L31A 2YVZA 4L27A 3KPCA 2UV4A 2YZQA 2YVYA 3HF7A 2OOXE 3DDJA 2OOYE 4P1OA 5K22B 5IIPA 4IY4A 3LQNA 2PFIA 3PC2A 4L28A 2P9MA 4L0DA 3I8NA 4FRYA 4NOCA 2QREE 4ESYB 3K2VA
chains in the Genus database with same CATH superfamily
2D4ZA 3LFZA 4COOA 2JA3A 3FNAA 5K23C 4IY2A 2UV5A 2OUXA 3OCOA 4DQWA 3SL7A 4L3VA 3TDHC 4P1GA 3KXRA 5K25C 3KPBA 3KPDA 3L2BA 3K6EA 2O16A 2QRCE 1PVMA 3FWSA 2YZIA 3PC3A 1O50A 2EF7A 2NYEA 3PC4A 2QLVC 3GBYA 3ORGA 4GQVA 3FWRA 4GQYA 4O9KA 4UUUA 1Y5HA 3TE5C 2RIFA 3FV6A 2QR1E 5KS7A 4PCUA 3FHMA 2RC3A 4FXSA 2QRDE 4GQWA 5LXQA 1YAVA 5MMZA 2ZY9A 3LHHA 2YVXA 4IYSA 2NYCA 1XKFA 4ESYA 2UV7A 3OI8A 4HG0A 5K24C 2RIHA 4IY0A 3T4NC 3KH5A 2EMQA 2QH1A 1PBJA 4IY3A 2UV6A 3OCMA 3LV9A 3L31A 2YVZA 4L27A 3KPCA 2UV4A 2YZQA 2YVYA 3HF7A 2OOXE 3DDJA 2OOYE 4P1OA 5K22B 2J9LA 5IIPA 4IY4A 3LQNA 2PFIA 3PC2A 4L28A 2P9MA 4L0DA 3I8NA 4FRYA 4NOCA 2QREE 4ESYB 3K2VA
chains in the Genus database with same CATH topology
2D4ZA 3LFZA 4COOA 2JA3A 3FNAA 5K23C 4IY2A 2UV5A 2OUXA 3OCOA 4DQWA 3SL7A 4L3VA 3TDHC 4P1GA 3KXRA 5K25C 3KPBA 3KPDA 3L2BA 3K6EA 2O16A 2QRCE 1PVMA 3FWSA 2YZIA 3PC3A 1O50A 2EF7A 2NYEA 3PC4A 2QLVC 3GBYA 3ORGA 4GQVA 3FWRA 4GQYA 4O9KA 4UUUA 1Y5HA 3TE5C 2RIFA 3FV6A 2QR1E 5KS7A 4PCUA 3FHMA 2RC3A 4FXSA 2QRDE 4GQWA 5LXQA 1YAVA 5MMZA 2ZY9A 3LHHA 2YVXA 4IYSA 2NYCA 1XKFA 4ESYA 2UV7A 3OI8A 4HG0A 5K24C 2RIHA 4IY0A 3T4NC 3KH5A 2EMQA 2QH1A 1PBJA 4IY3A 2UV6A 3OCMA 3LV9A 3L31A 2YVZA 4L27A 3KPCA 2UV4A 2YZQA 2YVYA 3HF7A 2OOXE 3DDJA 2OOYE 4P1OA 5K22B 2J9LA 5IIPA 4IY4A 3LQNA 2PFIA 3PC2A 4L28A 2P9MA 4L0DA 3I8NA 4FRYA 4NOCA 2QREE 4ESYB 3K2VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D4Z A;  3LFZ A;  4COO A;  3FNA A;  5K23 C;  4IY2 A;  2UV5 A;  2OUX A;  3OCO A;  4DQW A;  3SL7 A;  4L3V A;  3TDH C;  4P1G A;  3KXR A;  5K25 C;  3KPB A;  3KPD A;  3L2B A;  3K6E A;  2O16 A;  2QRC E;  1PVM A;  3FWS A;  2YZI A;  3PC3 A;  1O50 A;  2EF7 A;  2NYE A;  3PC4 A;  2QLV C;  3GBY A;  3ORG A;  4GQV A;  3FWR A;  4GQY A;  4O9K A;  4UUU A;  1Y5H A;  3TE5 C;  2RIF A;  3FV6 A;  2QR1 E;  5KS7 A;  4PCU A;  3FHM A;  2RC3 A;  4FXS A;  2QRD E;  4GQW A;  5LXQ A;  1YAV A;  5MMZ A;  2ZY9 A;  3LHH A;  2YVX A;  4IYS A;  2NYC A;  1XKF A;  4ESY A;  2UV7 A;  3OI8 A;  4HG0 A;  5K24 C;  2RIH A;  4IY0 A;  3T4N C;  3KH5 A;  2EMQ A;  2QH1 A;  1PBJ A;  4IY3 A;  2UV6 A;  3OCM A;  3LV9 A;  3L31 A;  2YVZ A;  4L27 A;  3KPC A;  2UV4 A;  2YZQ A;  2YVY A;  3HF7 A;  2OOX E;  3DDJ A;  2OOY E;  4P1O A;  5K22 B;  5IIP A;  4IY4 A;  3LQN A;  2PFI A;  3PC2 A;  4L28 A;  2P9M A;  4L0D A;  3I8N A;  4FRY A;  4NOC A;  2QRE E;  4ESY B;  3K2V A; 
#chains in the Genus database with same CATH topology
 2D4Z A;  3LFZ A;  4COO A;  2JA3 A;  3FNA A;  5K23 C;  4IY2 A;  2UV5 A;  2OUX A;  3OCO A;  4DQW A;  3SL7 A;  4L3V A;  3TDH C;  4P1G A;  3KXR A;  5K25 C;  3KPB A;  3KPD A;  3L2B A;  3K6E A;  2O16 A;  2QRC E;  1PVM A;  3FWS A;  2YZI A;  3PC3 A;  1O50 A;  2EF7 A;  2NYE A;  3PC4 A;  2QLV C;  3GBY A;  3ORG A;  4GQV A;  3FWR A;  4GQY A;  4O9K A;  4UUU A;  1Y5H A;  3TE5 C;  2RIF A;  3FV6 A;  2QR1 E;  5KS7 A;  4PCU A;  3FHM A;  2RC3 A;  4FXS A;  2QRD E;  4GQW A;  5LXQ A;  1YAV A;  5MMZ A;  2ZY9 A;  3LHH A;  2YVX A;  4IYS A;  2NYC A;  1XKF A;  4ESY A;  2UV7 A;  3OI8 A;  4HG0 A;  5K24 C;  2RIH A;  4IY0 A;  3T4N C;  3KH5 A;  2EMQ A;  2QH1 A;  1PBJ A;  4IY3 A;  2UV6 A;  3OCM A;  3LV9 A;  3L31 A;  2YVZ A;  4L27 A;  3KPC A;  2UV4 A;  2YZQ A;  2YVY A;  3HF7 A;  2OOX E;  3DDJ A;  2OOY E;  4P1O A;  5K22 B;  2J9L A;  5IIP A;  4IY4 A;  3LQN A;  2PFI A;  3PC2 A;  4L28 A;  2P9M A;  4L0D A;  3I8N A;  4FRY A;  4NOC A;  2QRE E;  4ESY B;  3K2V A; 
#chains in the Genus database with same CATH homology
 2D4Z A;  3LFZ A;  4COO A;  2JA3 A;  3FNA A;  5K23 C;  4IY2 A;  2UV5 A;  2OUX A;  3OCO A;  4DQW A;  3SL7 A;  4L3V A;  3TDH C;  4P1G A;  3KXR A;  5K25 C;  3KPB A;  3KPD A;  3L2B A;  3K6E A;  2O16 A;  2QRC E;  1PVM A;  3FWS A;  2YZI A;  3PC3 A;  1O50 A;  2EF7 A;  2NYE A;  3PC4 A;  2QLV C;  3GBY A;  3ORG A;  4GQV A;  3FWR A;  4GQY A;  4O9K A;  4UUU A;  1Y5H A;  3TE5 C;  2RIF A;  3FV6 A;  2QR1 E;  5KS7 A;  4PCU A;  3FHM A;  2RC3 A;  4FXS A;  2QRD E;  4GQW A;  5LXQ A;  1YAV A;  5MMZ A;  2ZY9 A;  3LHH A;  2YVX A;  4IYS A;  2NYC A;  1XKF A;  4ESY A;  2UV7 A;  3OI8 A;  4HG0 A;  5K24 C;  2RIH A;  4IY0 A;  3T4N C;  3KH5 A;  2EMQ A;  2QH1 A;  1PBJ A;  4IY3 A;  2UV6 A;  3OCM A;  3LV9 A;  3L31 A;  2YVZ A;  4L27 A;  3KPC A;  2UV4 A;  2YZQ A;  2YVY A;  3HF7 A;  2OOX E;  3DDJ A;  2OOY E;  4P1O A;  5K22 B;  2J9L A;  5IIP A;  4IY4 A;  3LQN A;  2PFI A;  3PC2 A;  4L28 A;  2P9M A;  4L0D A;  3I8N A;  4FRY A;  4NOC A;  2QRE E;  4ESY B;  3K2V A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.