2QREE

Crystal structure of the adenylate sensor from amp-activated protein kinase in complex with 5-aminoimidazole-4-carboxamide 1-beta-d-ribofuranotide (zmp)
Total Genus 81
5010015020025030001020304050607080
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
315
structure length
315
Chain Sequence
MDVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYO1 (3-5)AH1 (5-21)AH12 (306-313)AH6 (128-138)3H1 (24-27)TI3 (123-126)S1 (37-38)S2 (58-62)AH5 (102-112)TI1 (38-41)AH2 (43-53)AH4 (99-99)S3 (67-72)TIV2 (63-66)S5 (154-162)TIV1 (62-65)AH3 (74-87)TI12 (246-249)TI2 (90-93)3H2 (93-98)TI11 (245-248)TIV3 (113-116)S4 (142-149)TIV5 (150-153)AH7 (163-173)TI4 (174-177)TI5 (175-178)TI15 (271-274)TI7 (177-180)3H3 (184-186)AH10 (253-259)TI8 (199-202)TI13 (247-250)AH8 (204-214)TI9 (223-226)TI16 (295-298)S7 (228-233)TI10 (233-236)AH9 (236-242)S9 (290-294)S8 (269-270)AH11 (276-285)TIV4 (149-152)S10 (300-305)S6 (218-222)TI14 (248-251)TIV7 (261-264)Updating...
connected with : NaN
molecule tags Transferase
source organism Schizosaccharomyces pombe
publication title Structural Insight into AMPK Regulation: ADP Comes into Play.
pubmed doi rcsb
molecule keywords SNF1-like protein kinase ssp2
total genus 81
structure length 315
sequence length 315
chains with identical sequence G
ec nomenclature
pdb deposition date 2007-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 2qreE02
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 2qreE01
2RIFA 4IY2A 3K2VA 2RC3A 3GBYA 4P1OA 2UV7A 3KH5A 5K24C 3L31A 5LXQA 1PBJA 3FNAA 2ZY9A 1YAVA 2EF7A 2QR1E 4L3VA 3OCOA 2QREE 2YVZA 5K25C 2YVYA 3FHMA 4HG0A 5IIPA 3PC4A 3FV6A 2O16A 2UV5A 4IYSA 4GQWA 2QLVC 1Y5HA 2NYEA 1O50A 3LFZA 4IY4A 2YVXA 4IY0A 3FWSA 2UV4A 3LV9A 1PVMA 4GQVA 4UUUA 3DDJA 2NYCA 4ESYB 5K22B 3OI8A 3HF7A 3T4NC 3KXRA 4P1GA 2EMQA 3FWRA 4COOA 3LQNA 3K6EA 4NOCA 2D4ZA 3OCMA 4L0DA 4GQYA 4ESYA 4FRYA 4IY3A 2QRCE 2UV6A 1XKFA 3KPBA 2P9MA 4L27A 2QRDE 3LHHA 4O9KA 4FXSA 3I8NA 5KS7A 4L28A 2OOYE 3TE5C 2OUXA 4PCUA 3TDHC 5K23C 3PC2A 3PC3A 3KPCA 2YZQA 5MMZA 2YZIA 3L2BA 2QH1A 2PFIA 2RIHA 3KPDA 4DQWA 3SL7A 2OOXE 3ORGA
chains in the Genus database with same CATH superfamily
2RIFA 4IY2A 3K2VA 2RC3A 3GBYA 4P1OA 2UV7A 3KH5A 5K24C 3L31A 5LXQA 1PBJA 3FNAA 2ZY9A 1YAVA 2EF7A 2QR1E 4L3VA 3OCOA 2QREE 2YVZA 5K25C 2YVYA 3FHMA 4HG0A 5IIPA 3PC4A 3FV6A 2O16A 2UV5A 4IYSA 4GQWA 2QLVC 1Y5HA 2NYEA 1O50A 3LFZA 4IY4A 2YVXA 4IY0A 3FWSA 2UV4A 3LV9A 1PVMA 4GQVA 4UUUA 3DDJA 2NYCA 4ESYB 2J9LA 2JA3A 5K22B 3OI8A 3HF7A 3T4NC 3KXRA 4P1GA 2EMQA 3FWRA 4COOA 3LQNA 3K6EA 4NOCA 2D4ZA 3OCMA 4L0DA 4GQYA 4ESYA 4FRYA 4IY3A 2QRCE 2UV6A 1XKFA 3KPBA 2P9MA 4L27A 2QRDE 3LHHA 4O9KA 4FXSA 3I8NA 5KS7A 4L28A 2OOYE 3TE5C 2OUXA 4PCUA 3TDHC 5K23C 3PC2A 3PC3A 3KPCA 2YZQA 5MMZA 2YZIA 3L2BA 2QH1A 2PFIA 2RIHA 3KPDA 4DQWA 3SL7A 2OOXE 3ORGA
chains in the Genus database with same CATH topology
2RIFA 4IY2A 3K2VA 2RC3A 3GBYA 4P1OA 2UV7A 3KH5A 5K24C 3L31A 5LXQA 1PBJA 3FNAA 2ZY9A 1YAVA 2EF7A 2QR1E 4L3VA 3OCOA 2QREE 2YVZA 5K25C 2YVYA 3FHMA 4HG0A 5IIPA 3PC4A 3FV6A 2O16A 2UV5A 4IYSA 4GQWA 2QLVC 1Y5HA 2NYEA 1O50A 3LFZA 4IY4A 2YVXA 4IY0A 3FWSA 2UV4A 3LV9A 1PVMA 4GQVA 4UUUA 3DDJA 2NYCA 4ESYB 2J9LA 2JA3A 5K22B 3OI8A 3HF7A 3T4NC 3KXRA 4P1GA 2EMQA 3FWRA 4COOA 3LQNA 3K6EA 4NOCA 2D4ZA 3OCMA 4L0DA 4GQYA 4ESYA 4FRYA 4IY3A 2QRCE 2UV6A 1XKFA 3KPBA 2P9MA 4L27A 2QRDE 3LHHA 4O9KA 4FXSA 3I8NA 5KS7A 4L28A 2OOYE 3TE5C 2OUXA 4PCUA 3TDHC 5K23C 3PC2A 3PC3A 3KPCA 2YZQA 5MMZA 2YZIA 3L2BA 2QH1A 2PFIA 2RIHA 3KPDA 4DQWA 3SL7A 2OOXE 3ORGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RIF A;  4IY2 A;  3K2V A;  2RC3 A;  3GBY A;  4P1O A;  2UV7 A;  3KH5 A;  5K24 C;  3L31 A;  5LXQ A;  1PBJ A;  3FNA A;  2ZY9 A;  1YAV A;  2EF7 A;  2QR1 E;  4L3V A;  3OCO A;  2QRE E;  2YVZ A;  5K25 C;  2YVY A;  3FHM A;  4HG0 A;  5IIP A;  3PC4 A;  3FV6 A;  2O16 A;  2UV5 A;  4IYS A;  4GQW A;  2QLV C;  1Y5H A;  2NYE A;  1O50 A;  3LFZ A;  4IY4 A;  2YVX A;  4IY0 A;  3FWS A;  2UV4 A;  3LV9 A;  1PVM A;  4GQV A;  4UUU A;  3DDJ A;  2NYC A;  4ESY B;  5K22 B;  3OI8 A;  3HF7 A;  3T4N C;  3KXR A;  4P1G A;  2EMQ A;  3FWR A;  4COO A;  3LQN A;  3K6E A;  4NOC A;  2D4Z A;  3OCM A;  4L0D A;  4GQY A;  4ESY A;  4FRY A;  4IY3 A;  2QRC E;  2UV6 A;  1XKF A;  3KPB A;  2P9M A;  4L27 A;  2QRD E;  3LHH A;  4O9K A;  4FXS A;  3I8N A;  5KS7 A;  4L28 A;  2OOY E;  3TE5 C;  2OUX A;  4PCU A;  3TDH C;  5K23 C;  3PC2 A;  3PC3 A;  3KPC A;  2YZQ A;  5MMZ A;  2YZI A;  3L2B A;  2QH1 A;  2PFI A;  2RIH A;  3KPD A;  4DQW A;  3SL7 A;  2OOX E;  3ORG A; 
#chains in the Genus database with same CATH topology
 2RIF A;  4IY2 A;  3K2V A;  2RC3 A;  3GBY A;  4P1O A;  2UV7 A;  3KH5 A;  5K24 C;  3L31 A;  5LXQ A;  1PBJ A;  3FNA A;  2ZY9 A;  1YAV A;  2EF7 A;  2QR1 E;  4L3V A;  3OCO A;  2QRE E;  2YVZ A;  5K25 C;  2YVY A;  3FHM A;  4HG0 A;  5IIP A;  3PC4 A;  3FV6 A;  2O16 A;  2UV5 A;  4IYS A;  4GQW A;  2QLV C;  1Y5H A;  2NYE A;  1O50 A;  3LFZ A;  4IY4 A;  2YVX A;  4IY0 A;  3FWS A;  2UV4 A;  3LV9 A;  1PVM A;  4GQV A;  4UUU A;  3DDJ A;  2NYC A;  4ESY B;  2J9L A;  2JA3 A;  5K22 B;  3OI8 A;  3HF7 A;  3T4N C;  3KXR A;  4P1G A;  2EMQ A;  3FWR A;  4COO A;  3LQN A;  3K6E A;  4NOC A;  2D4Z A;  3OCM A;  4L0D A;  4GQY A;  4ESY A;  4FRY A;  4IY3 A;  2QRC E;  2UV6 A;  1XKF A;  3KPB A;  2P9M A;  4L27 A;  2QRD E;  3LHH A;  4O9K A;  4FXS A;  3I8N A;  5KS7 A;  4L28 A;  2OOY E;  3TE5 C;  2OUX A;  4PCU A;  3TDH C;  5K23 C;  3PC2 A;  3PC3 A;  3KPC A;  2YZQ A;  5MMZ A;  2YZI A;  3L2B A;  2QH1 A;  2PFI A;  2RIH A;  3KPD A;  4DQW A;  3SL7 A;  2OOX E;  3ORG A; 
#chains in the Genus database with same CATH homology
 2RIF A;  4IY2 A;  3K2V A;  2RC3 A;  3GBY A;  4P1O A;  2UV7 A;  3KH5 A;  5K24 C;  3L31 A;  5LXQ A;  1PBJ A;  3FNA A;  2ZY9 A;  1YAV A;  2EF7 A;  2QR1 E;  4L3V A;  3OCO A;  2QRE E;  2YVZ A;  5K25 C;  2YVY A;  3FHM A;  4HG0 A;  5IIP A;  3PC4 A;  3FV6 A;  2O16 A;  2UV5 A;  4IYS A;  4GQW A;  2QLV C;  1Y5H A;  2NYE A;  1O50 A;  3LFZ A;  4IY4 A;  2YVX A;  4IY0 A;  3FWS A;  2UV4 A;  3LV9 A;  1PVM A;  4GQV A;  4UUU A;  3DDJ A;  2NYC A;  4ESY B;  2J9L A;  2JA3 A;  5K22 B;  3OI8 A;  3HF7 A;  3T4N C;  3KXR A;  4P1G A;  2EMQ A;  3FWR A;  4COO A;  3LQN A;  3K6E A;  4NOC A;  2D4Z A;  3OCM A;  4L0D A;  4GQY A;  4ESY A;  4FRY A;  4IY3 A;  2QRC E;  2UV6 A;  1XKF A;  3KPB A;  2P9M A;  4L27 A;  2QRD E;  3LHH A;  4O9K A;  4FXS A;  3I8N A;  5KS7 A;  4L28 A;  2OOY E;  3TE5 C;  2OUX A;  4PCU A;  3TDH C;  5K23 C;  3PC2 A;  3PC3 A;  3KPC A;  2YZQ A;  5MMZ A;  2YZI A;  3L2B A;  2QH1 A;  2PFI A;  2RIH A;  3KPD A;  4DQW A;  3SL7 A;  2OOX E;  3ORG A; 
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similar chains in the pdb database (?% sequence similarity)

 
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