2RC3A

Crystal structure of cbs domain, ne2398
Total Genus 38

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
127
structure length
127
Chain Sequence
MKTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAIS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (41-44)TIV1 (64-67)AH2 (46-56)S1 (39-40)S2 (60-65)AH3 (75-81)S3 (68-74)3H1 (82-84)TI2 (106-109)3H2 (89-91)AH4 (111-121)TVIII1 (99-102)S4 (125-130)3H3 (94-96)AH1 (26-33)Updating...
connected with : NaN
molecule tags Structural genomics, unknown function
source organism Nitrosomonas europaea atcc 19718
publication title Crystal structure of CBS domain, NE2398.
rcsb
molecule keywords CBS domain
total genus 38
structure length 127
sequence length 127
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-09-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 2rc3A00
4L3VA 3KXRA 1O50A 2YZQA 3OCMA 2D4ZA 3TDHC 2OOXE 1YAVA 2UV6A 5K22B 3FWSA 4FRYA 4IY4A 3L2BA 3HF7A 5K24C 1XKFA 2YVXA 3DDJA 3TE5C 2ZY9A 3SL7A 3PC3A 2YVYA 2O16A 2QLVC 4P1OA 3PC2A 2PFIA 2YVZA 4L0DA 2NYEA 4IY3A 4GQYA 4IYSA 4FXSA 3LHHA 3L31A 1PVMA 3FV6A 4L27A 4UUUA 2EMQA 1PBJA 3OI8A 2YZIA 4O9KA 3K2VA 3LQNA 4GQWA 3GBYA 4DQWA 5IIPA 4HG0A 2RC3A 3OCOA 3K6EA 4GQVA 5K25C 2OOYE 5LXQA 3KPBA 4NOCA 2RIFA 2UV7A 3LV9A 3ORGA 2QRCE 2QH1A 2QRDE 3T4NC 2EF7A 4PCUA 2UV4A 2NYCA 1Y5HA 5KS7A 3KPDA 4L28A 3I8NA 3FWRA 5K23C 4ESYA 2QR1E 2RIHA 3KH5A 4IY0A 4ESYB 4COOA 5MMZA 2QREE 4P1GA 3LFZA 4IY2A 3KPCA 3FHMA 3FNAA 2OUXA 2P9MA 3PC4A 2UV5A
chains in the Genus database with same CATH superfamily
4L3VA 3KXRA 1O50A 2YZQA 3OCMA 2D4ZA 3TDHC 2OOXE 1YAVA 2UV6A 5K22B 3FWSA 4FRYA 4IY4A 3L2BA 3HF7A 5K24C 1XKFA 2YVXA 3DDJA 3TE5C 2ZY9A 3SL7A 3PC3A 2YVYA 2O16A 2QLVC 4P1OA 3PC2A 2PFIA 2YVZA 4L0DA 2NYEA 4IY3A 4GQYA 4IYSA 4FXSA 3LHHA 3L31A 1PVMA 3FV6A 4L27A 4UUUA 2EMQA 1PBJA 3OI8A 2JA3A 2YZIA 3K2VA 4O9KA 3LQNA 4GQWA 3GBYA 4DQWA 5IIPA 4HG0A 2RC3A 3OCOA 3K6EA 4GQVA 5K25C 2OOYE 5LXQA 3KPBA 4NOCA 2RIFA 2UV7A 3LV9A 3ORGA 2QRCE 2QH1A 2QRDE 3T4NC 2EF7A 4PCUA 2UV4A 2NYCA 1Y5HA 5KS7A 3KPDA 2J9LA 4L28A 3I8NA 3FWRA 5K23C 4ESYA 2QR1E 2RIHA 3KH5A 4IY0A 4ESYB 4COOA 5MMZA 2QREE 4P1GA 3LFZA 4IY2A 3KPCA 3FHMA 3FNAA 2OUXA 2P9MA 3PC4A 2UV5A
chains in the Genus database with same CATH topology
4L3VA 3KXRA 1O50A 2YZQA 3OCMA 2D4ZA 3TDHC 2OOXE 1YAVA 2UV6A 5K22B 3FWSA 4FRYA 4IY4A 3L2BA 3HF7A 5K24C 1XKFA 2YVXA 3DDJA 3TE5C 2ZY9A 3SL7A 3PC3A 2YVYA 2O16A 2QLVC 4P1OA 3PC2A 2PFIA 2YVZA 4L0DA 2NYEA 4IY3A 4GQYA 4IYSA 4FXSA 3LHHA 3L31A 1PVMA 3FV6A 4L27A 4UUUA 2EMQA 1PBJA 3OI8A 2JA3A 2YZIA 3K2VA 4O9KA 3LQNA 4GQWA 3GBYA 4DQWA 5IIPA 4HG0A 2RC3A 3OCOA 3K6EA 4GQVA 5K25C 2OOYE 5LXQA 3KPBA 4NOCA 2RIFA 2UV7A 3LV9A 3ORGA 2QRCE 2QH1A 2QRDE 3T4NC 2EF7A 4PCUA 2UV4A 2NYCA 1Y5HA 5KS7A 3KPDA 2J9LA 4L28A 3I8NA 3FWRA 5K23C 4ESYA 2QR1E 2RIHA 3KH5A 4IY0A 4ESYB 4COOA 5MMZA 2QREE 4P1GA 3LFZA 4IY2A 3KPCA 3FHMA 3FNAA 2OUXA 2P9MA 3PC4A 2UV5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L3V A;  3KXR A;  1O50 A;  2YZQ A;  3OCM A;  2D4Z A;  3TDH C;  2OOX E;  1YAV A;  2UV6 A;  5K22 B;  3FWS A;  4FRY A;  4IY4 A;  3L2B A;  3HF7 A;  5K24 C;  1XKF A;  2YVX A;  3DDJ A;  3TE5 C;  2ZY9 A;  3SL7 A;  3PC3 A;  2YVY A;  2O16 A;  2QLV C;  4P1O A;  3PC2 A;  2PFI A;  2YVZ A;  4L0D A;  2NYE A;  4IY3 A;  4GQY A;  4IYS A;  4FXS A;  3LHH A;  3L31 A;  1PVM A;  3FV6 A;  4L27 A;  4UUU A;  2EMQ A;  1PBJ A;  3OI8 A;  2YZI A;  4O9K A;  3K2V A;  3LQN A;  4GQW A;  3GBY A;  4DQW A;  5IIP A;  4HG0 A;  2RC3 A;  3OCO A;  3K6E A;  4GQV A;  5K25 C;  2OOY E;  5LXQ A;  3KPB A;  4NOC A;  2RIF A;  2UV7 A;  3LV9 A;  3ORG A;  2QRC E;  2QH1 A;  2QRD E;  3T4N C;  2EF7 A;  4PCU A;  2UV4 A;  2NYC A;  1Y5H A;  5KS7 A;  3KPD A;  4L28 A;  3I8N A;  3FWR A;  5K23 C;  4ESY A;  2QR1 E;  2RIH A;  3KH5 A;  4IY0 A;  4ESY B;  4COO A;  5MMZ A;  2QRE E;  4P1G A;  3LFZ A;  4IY2 A;  3KPC A;  3FHM A;  3FNA A;  2OUX A;  2P9M A;  3PC4 A;  2UV5 A; 
#chains in the Genus database with same CATH topology
 4L3V A;  3KXR A;  1O50 A;  2YZQ A;  3OCM A;  2D4Z A;  3TDH C;  2OOX E;  1YAV A;  2UV6 A;  5K22 B;  3FWS A;  4FRY A;  4IY4 A;  3L2B A;  3HF7 A;  5K24 C;  1XKF A;  2YVX A;  3DDJ A;  3TE5 C;  2ZY9 A;  3SL7 A;  3PC3 A;  2YVY A;  2O16 A;  2QLV C;  4P1O A;  3PC2 A;  2PFI A;  2YVZ A;  4L0D A;  2NYE A;  4IY3 A;  4GQY A;  4IYS A;  4FXS A;  3LHH A;  3L31 A;  1PVM A;  3FV6 A;  4L27 A;  4UUU A;  2EMQ A;  1PBJ A;  3OI8 A;  2JA3 A;  2YZI A;  3K2V A;  4O9K A;  3LQN A;  4GQW A;  3GBY A;  4DQW A;  5IIP A;  4HG0 A;  2RC3 A;  3OCO A;  3K6E A;  4GQV A;  5K25 C;  2OOY E;  5LXQ A;  3KPB A;  4NOC A;  2RIF A;  2UV7 A;  3LV9 A;  3ORG A;  2QRC E;  2QH1 A;  2QRD E;  3T4N C;  2EF7 A;  4PCU A;  2UV4 A;  2NYC A;  1Y5H A;  5KS7 A;  3KPD A;  2J9L A;  4L28 A;  3I8N A;  3FWR A;  5K23 C;  4ESY A;  2QR1 E;  2RIH A;  3KH5 A;  4IY0 A;  4ESY B;  4COO A;  5MMZ A;  2QRE E;  4P1G A;  3LFZ A;  4IY2 A;  3KPC A;  3FHM A;  3FNA A;  2OUX A;  2P9M A;  3PC4 A;  2UV5 A; 
#chains in the Genus database with same CATH homology
 4L3V A;  3KXR A;  1O50 A;  2YZQ A;  3OCM A;  2D4Z A;  3TDH C;  2OOX E;  1YAV A;  2UV6 A;  5K22 B;  3FWS A;  4FRY A;  4IY4 A;  3L2B A;  3HF7 A;  5K24 C;  1XKF A;  2YVX A;  3DDJ A;  3TE5 C;  2ZY9 A;  3SL7 A;  3PC3 A;  2YVY A;  2O16 A;  2QLV C;  4P1O A;  3PC2 A;  2PFI A;  2YVZ A;  4L0D A;  2NYE A;  4IY3 A;  4GQY A;  4IYS A;  4FXS A;  3LHH A;  3L31 A;  1PVM A;  3FV6 A;  4L27 A;  4UUU A;  2EMQ A;  1PBJ A;  3OI8 A;  2JA3 A;  2YZI A;  3K2V A;  4O9K A;  3LQN A;  4GQW A;  3GBY A;  4DQW A;  5IIP A;  4HG0 A;  2RC3 A;  3OCO A;  3K6E A;  4GQV A;  5K25 C;  2OOY E;  5LXQ A;  3KPB A;  4NOC A;  2RIF A;  2UV7 A;  3LV9 A;  3ORG A;  2QRC E;  2QH1 A;  2QRD E;  3T4N C;  2EF7 A;  4PCU A;  2UV4 A;  2NYC A;  1Y5H A;  5KS7 A;  3KPD A;  2J9L A;  4L28 A;  3I8N A;  3FWR A;  5K23 C;  4ESY A;  2QR1 E;  2RIH A;  3KH5 A;  4IY0 A;  4ESY B;  4COO A;  5MMZ A;  2QRE E;  4P1G A;  3LFZ A;  4IY2 A;  3KPC A;  3FHM A;  3FNA A;  2OUX A;  2P9M A;  3PC4 A;  2UV5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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