2UV7A

Crystal structure of a cbs domain pair from the regulatory gamma1 subunit of human ampk in complex with amp
Total Genus 39
204060801001201400510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
143
structure length
143
Chain Sequence
HEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHGLVVVDENDVVKGIVSLSDILQALV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
source organism Homo sapiens
publication title Structure of a Cbs-Domain Pair from the Regulatory Gamma1 Subunit of Human Ampk in Complex with AMP and Zmp.
pubmed doi rcsb
molecule keywords 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1
total genus 39
structure length 143
sequence length 143
ec nomenclature
pdb deposition date 2007-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 2uv7A00
3FNAA 3PC2A 4IY0A 5IIPA 1XKFA 2QRCE 2D4ZA 2QR1E 4L3VA 3LFZA 4DQWA 3OCMA 2RC3A 4COOA 2QLVC 4IYSA 5K23C 3OI8A 1PBJA 3PC3A 4L0DA 2EF7A 3ORGA 4L28A 4FXSA 3K6EA 2PFIA 2NYEA 2NYCA 1O50A 4FRYA 2OOXE 4NOCA 2RIHA 3HF7A 2UV5A 5K24C 1PVMA 4ESYB 3OCOA 3KH5A 3DDJA 4O9KA 3PC4A 4GQVA 3KPBA 2YZIA 2P9MA 3LHHA 3FV6A 2YVXA 3FWSA 3TDHC 3KPDA 3LV9A 4GQWA 5MMZA 3GBYA 3SL7A 2ZY9A 5K25C 4P1OA 2UV4A 2YVZA 3K2VA 2UV7A 3T4NC 2QH1A 4L27A 1YAVA 4P1GA 2YVYA 2OOYE 3FWRA 4UUUA 2QRDE 3FHMA 4IY2A 2QREE 5LXQA 2OUXA 3TE5C 4IY4A 3KPCA 4GQYA 4PCUA 2O16A 3L31A 3LQNA 4IY3A 3I8NA 2YZQA 2EMQA 3L2BA 3KXRA 5KS7A 4HG0A 5K22B 1Y5HA 4ESYA 2RIFA 2UV6A
chains in the Genus database with same CATH superfamily
3FNAA 3PC2A 4IY0A 5IIPA 1XKFA 2QRCE 2D4ZA 2QR1E 4L3VA 3LFZA 4DQWA 3OCMA 2RC3A 4COOA 2QLVC 4IYSA 5K23C 3OI8A 1PBJA 3PC3A 4L0DA 2EF7A 3ORGA 4L28A 4FXSA 3K6EA 2PFIA 2NYEA 2NYCA 1O50A 4FRYA 2OOXE 4NOCA 2RIHA 3HF7A 2UV5A 2J9LA 5K24C 1PVMA 4ESYB 3OCOA 3KH5A 3DDJA 4O9KA 3PC4A 4GQVA 3KPBA 2YZIA 2P9MA 3LHHA 3FV6A 2YVXA 3FWSA 3TDHC 3KPDA 3LV9A 4GQWA 5MMZA 3GBYA 3SL7A 2ZY9A 5K25C 4P1OA 2UV4A 2YVZA 3K2VA 2UV7A 3T4NC 2QH1A 4L27A 1YAVA 4P1GA 2YVYA 2OOYE 3FWRA 4UUUA 2QRDE 3FHMA 2JA3A 4IY2A 2QREE 5LXQA 2OUXA 3TE5C 4IY4A 3KPCA 4GQYA 4PCUA 2O16A 3L31A 3LQNA 4IY3A 3I8NA 2YZQA 2EMQA 3L2BA 3KXRA 5KS7A 4HG0A 5K22B 1Y5HA 4ESYA 2RIFA 2UV6A
chains in the Genus database with same CATH topology
3FNAA 3PC2A 4IY0A 5IIPA 1XKFA 2QRCE 2D4ZA 2QR1E 4L3VA 3LFZA 4DQWA 3OCMA 2RC3A 4COOA 2QLVC 4IYSA 5K23C 3OI8A 1PBJA 3PC3A 4L0DA 2EF7A 3ORGA 4L28A 4FXSA 3K6EA 2PFIA 2NYEA 2NYCA 1O50A 4FRYA 2OOXE 4NOCA 2RIHA 3HF7A 2UV5A 2J9LA 5K24C 1PVMA 4ESYB 3OCOA 3KH5A 3DDJA 4O9KA 3PC4A 4GQVA 3KPBA 2YZIA 2P9MA 3LHHA 3FV6A 2YVXA 3FWSA 3TDHC 3KPDA 3LV9A 4GQWA 5MMZA 3GBYA 3SL7A 2ZY9A 5K25C 4P1OA 2UV4A 2YVZA 3K2VA 2UV7A 3T4NC 2QH1A 4L27A 1YAVA 4P1GA 2YVYA 2OOYE 3FWRA 4UUUA 2QRDE 3FHMA 2JA3A 4IY2A 2QREE 5LXQA 2OUXA 3TE5C 4IY4A 3KPCA 4GQYA 4PCUA 2O16A 3L31A 3LQNA 4IY3A 3I8NA 2YZQA 2EMQA 3L2BA 3KXRA 5KS7A 4HG0A 5K22B 1Y5HA 4ESYA 2RIFA 2UV6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FNA A;  3PC2 A;  4IY0 A;  5IIP A;  1XKF A;  2QRC E;  2D4Z A;  2QR1 E;  4L3V A;  3LFZ A;  4DQW A;  3OCM A;  2RC3 A;  4COO A;  2QLV C;  4IYS A;  5K23 C;  3OI8 A;  1PBJ A;  3PC3 A;  4L0D A;  2EF7 A;  3ORG A;  4L28 A;  4FXS A;  3K6E A;  2PFI A;  2NYE A;  2NYC A;  1O50 A;  4FRY A;  2OOX E;  4NOC A;  2RIH A;  3HF7 A;  2UV5 A;  5K24 C;  1PVM A;  4ESY B;  3OCO A;  3KH5 A;  3DDJ A;  4O9K A;  3PC4 A;  4GQV A;  3KPB A;  2YZI A;  2P9M A;  3LHH A;  3FV6 A;  2YVX A;  3FWS A;  3TDH C;  3KPD A;  3LV9 A;  4GQW A;  5MMZ A;  3GBY A;  3SL7 A;  2ZY9 A;  5K25 C;  4P1O A;  2UV4 A;  2YVZ A;  3K2V A;  2UV7 A;  3T4N C;  2QH1 A;  4L27 A;  1YAV A;  4P1G A;  2YVY A;  2OOY E;  3FWR A;  4UUU A;  2QRD E;  3FHM A;  4IY2 A;  2QRE E;  5LXQ A;  2OUX A;  3TE5 C;  4IY4 A;  3KPC A;  4GQY A;  4PCU A;  2O16 A;  3L31 A;  3LQN A;  4IY3 A;  3I8N A;  2YZQ A;  2EMQ A;  3L2B A;  3KXR A;  5KS7 A;  4HG0 A;  5K22 B;  1Y5H A;  4ESY A;  2RIF A;  2UV6 A; 
#chains in the Genus database with same CATH topology
 3FNA A;  3PC2 A;  4IY0 A;  5IIP A;  1XKF A;  2QRC E;  2D4Z A;  2QR1 E;  4L3V A;  3LFZ A;  4DQW A;  3OCM A;  2RC3 A;  4COO A;  2QLV C;  4IYS A;  5K23 C;  3OI8 A;  1PBJ A;  3PC3 A;  4L0D A;  2EF7 A;  3ORG A;  4L28 A;  4FXS A;  3K6E A;  2PFI A;  2NYE A;  2NYC A;  1O50 A;  4FRY A;  2OOX E;  4NOC A;  2RIH A;  3HF7 A;  2UV5 A;  2J9L A;  5K24 C;  1PVM A;  4ESY B;  3OCO A;  3KH5 A;  3DDJ A;  4O9K A;  3PC4 A;  4GQV A;  3KPB A;  2YZI A;  2P9M A;  3LHH A;  3FV6 A;  2YVX A;  3FWS A;  3TDH C;  3KPD A;  3LV9 A;  4GQW A;  5MMZ A;  3GBY A;  3SL7 A;  2ZY9 A;  5K25 C;  4P1O A;  2UV4 A;  2YVZ A;  3K2V A;  2UV7 A;  3T4N C;  2QH1 A;  4L27 A;  1YAV A;  4P1G A;  2YVY A;  2OOY E;  3FWR A;  4UUU A;  2QRD E;  3FHM A;  2JA3 A;  4IY2 A;  2QRE E;  5LXQ A;  2OUX A;  3TE5 C;  4IY4 A;  3KPC A;  4GQY A;  4PCU A;  2O16 A;  3L31 A;  3LQN A;  4IY3 A;  3I8N A;  2YZQ A;  2EMQ A;  3L2B A;  3KXR A;  5KS7 A;  4HG0 A;  5K22 B;  1Y5H A;  4ESY A;  2RIF A;  2UV6 A; 
#chains in the Genus database with same CATH homology
 3FNA A;  3PC2 A;  4IY0 A;  5IIP A;  1XKF A;  2QRC E;  2D4Z A;  2QR1 E;  4L3V A;  3LFZ A;  4DQW A;  3OCM A;  2RC3 A;  4COO A;  2QLV C;  4IYS A;  5K23 C;  3OI8 A;  1PBJ A;  3PC3 A;  4L0D A;  2EF7 A;  3ORG A;  4L28 A;  4FXS A;  3K6E A;  2PFI A;  2NYE A;  2NYC A;  1O50 A;  4FRY A;  2OOX E;  4NOC A;  2RIH A;  3HF7 A;  2UV5 A;  2J9L A;  5K24 C;  1PVM A;  4ESY B;  3OCO A;  3KH5 A;  3DDJ A;  4O9K A;  3PC4 A;  4GQV A;  3KPB A;  2YZI A;  2P9M A;  3LHH A;  3FV6 A;  2YVX A;  3FWS A;  3TDH C;  3KPD A;  3LV9 A;  4GQW A;  5MMZ A;  3GBY A;  3SL7 A;  2ZY9 A;  5K25 C;  4P1O A;  2UV4 A;  2YVZ A;  3K2V A;  2UV7 A;  3T4N C;  2QH1 A;  4L27 A;  1YAV A;  4P1G A;  2YVY A;  2OOY E;  3FWR A;  4UUU A;  2QRD E;  3FHM A;  2JA3 A;  4IY2 A;  2QRE E;  5LXQ A;  2OUX A;  3TE5 C;  4IY4 A;  3KPC A;  4GQY A;  4PCU A;  2O16 A;  3L31 A;  3LQN A;  4IY3 A;  3I8N A;  2YZQ A;  2EMQ A;  3L2B A;  3KXR A;  5KS7 A;  4HG0 A;  5K22 B;  1Y5H A;  4ESY A;  2RIF A;  2UV6 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.