2YVZ | Genus

Total Genus 48

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	48
sequence length	248
structure length	248
Chain Sequence	LAVSLQEALQEGDTRALREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
source organism	Thermus thermophilus
publication title	Crystal structure of the MgtE Mg(2+) transporter pubmed doi rcsb
molecule keywords	Mg2+ transporter MgtE
total genus	48
structure length	248
sequence length	248
chains with identical sequence	B
ec nomenclature
pdb deposition date	2007-04-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00571	CBS	CBS domain
A	PF03448	MgtE_N	MgtE intracellular N domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.25.60.10	Mainly Alpha	Alpha Horseshoe	MgtE N-terminal fold	MgtE N-terminal domain-like	2yvzA01
3.10.580.10	Alpha Beta	Roll	CBS-domain	CBS-domain	2yvzA02

2QRDE 4O9KA 2OOXE 3LQNA 1XKFA 4GQYA 3PC4A 3ORGA 4HG0A 2D4ZA 3LFZA 4P1OA 3TE5C 4IYSA 1O50A 3KPCA 4GQWA 3KPDA 5K23C 3KH5A 2RIFA 2QREE 2P9MA 2RC3A 2RIHA 3HF7A 2UV4A 3OCMA 4ESYB 3DDJA 3SL7A 3GBYA 2UV6A 2EF7A 2PFIA 4GQVA 4DQWA 3L2BA 4IY4A 4ESYA 3FNAA 5K24C 3PC2A 5K22B 2NYEA 3FV6A 2YVYA 2YZQA 4UUUA 3I8NA 2ZY9A 5MMZA 3OI8A 3FWSA 4L3VA 4NOCA 2UV5A 1PVMA 2YVXA 4PCUA 3LHHA 2QLVC 3FHMA 3LV9A 2YZIA 4IY3A 5KS7A 4FRYA 4IY0A 3K6EA 3TDHC 4FXSA 3K2VA 5LXQA 4P1GA 4L27A 2UV7A 3FWRA 3PC3A 2NYCA 4L28A 2QH1A 1PBJA 3OCOA 4COOA 2QRCE 3KPBA 4L0DA 3T4NC 5IIPA 2QR1E 4IY2A 2YVZA 1YAVA 1Y5HA 2OUXA 2OOYE 5K25C 3KXRA 3L31A 2EMQA 2O16A
chains in the Genus database with same CATH superfamily

2QRDE 4O9KA 2OOXE 3LQNA 1XKFA 4GQYA 3PC4A 3ORGA 4HG0A 2D4ZA 3LFZA 4P1OA 3TE5C 4IYSA 1O50A 3KPCA 4GQWA 3KPDA 5K23C 3KH5A 2RIFA 2QREE 2P9MA 2RC3A 2RIHA 3HF7A 2UV4A 3OCMA 4ESYB 3DDJA 3SL7A 3GBYA 2UV6A 2EF7A 2PFIA 4GQVA 4DQWA 3L2BA 4IY4A 4ESYA 3FNAA 5K24C 3PC2A 5K22B 2NYEA 3FV6A 2YVYA 2YZQA 4UUUA 3I8NA 2ZY9A 5MMZA 3OI8A 3FWSA 4L3VA 4NOCA 2UV5A 1PVMA 2YVXA 4PCUA 3LHHA 2JA3A 2QLVC 3FHMA 3LV9A 2YZIA 4IY3A 5KS7A 4FRYA 2J9LA 4IY0A 3K6EA 3TDHC 4FXSA 3K2VA 5LXQA 4P1GA 4L27A 2UV7A 3FWRA 3PC3A 2NYCA 4L28A 2QH1A 1PBJA 3OCOA 4COOA 2QRCE 3KPBA 4L0DA 3T4NC 5IIPA 2QR1E 4IY2A 2YVZA 1YAVA 1Y5HA 2OUXA 2OOYE 5K25C 3KXRA 3L31A 2EMQA 2O16A
chains in the Genus database with same CATH topology

2QRDE 4O9KA 2OOXE 3LQNA 1XKFA 4GQYA 3PC4A 3ORGA 4HG0A 2D4ZA 3LFZA 4P1OA 3TE5C 4IYSA 1O50A 3KPCA 4GQWA 3KPDA 5K23C 3KH5A 2RIFA 2QREE 2P9MA 2RC3A 2RIHA 3HF7A 2UV4A 3OCMA 4ESYB 3DDJA 3SL7A 3GBYA 2UV6A 2EF7A 2PFIA 4GQVA 4DQWA 3L2BA 4IY4A 4ESYA 3FNAA 5K24C 3PC2A 5K22B 2NYEA 3FV6A 2YVYA 2YZQA 4UUUA 3I8NA 2ZY9A 5MMZA 3OI8A 3FWSA 4L3VA 4NOCA 2UV5A 1PVMA 2YVXA 4PCUA 3LHHA 2JA3A 2QLVC 3FHMA 3LV9A 2YZIA 4IY3A 5KS7A 4FRYA 2J9LA 4IY0A 3K6EA 3TDHC 4FXSA 3K2VA 5LXQA 4P1GA 4L27A 2UV7A 3FWRA 3PC3A 2NYCA 4L28A 2QH1A 1PBJA 3OCOA 4COOA 2QRCE 3KPBA 4L0DA 3T4NC 5IIPA 2QR1E 4IY2A 2YVZA 1YAVA 1Y5HA 2OUXA 2OOYE 5K25C 3KXRA 3L31A 2EMQA 2O16A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2QRD E;  4O9K A;  2OOX E;  3LQN A;  1XKF A;  4GQY A;  3PC4 A;  3ORG A;  4HG0 A;  2D4Z A;  3LFZ A;  4P1O A;  3TE5 C;  4IYS A;  1O50 A;  3KPC A;  4GQW A;  3KPD A;  5K23 C;  3KH5 A;  2RIF A;  2QRE E;  2P9M A;  2RC3 A;  2RIH A;  3HF7 A;  2UV4 A;  3OCM A;  4ESY B;  3DDJ A;  3SL7 A;  3GBY A;  2UV6 A;  2EF7 A;  2PFI A;  4GQV A;  4DQW A;  3L2B A;  4IY4 A;  4ESY A;  3FNA A;  5K24 C;  3PC2 A;  5K22 B;  2NYE A;  3FV6 A;  2YVY A;  2YZQ A;  4UUU A;  3I8N A;  2ZY9 A;  5MMZ A;  3OI8 A;  3FWS A;  4L3V A;  4NOC A;  2UV5 A;  1PVM A;  2YVX A;  4PCU A;  3LHH A;  2QLV C;  3FHM A;  3LV9 A;  2YZI A;  4IY3 A;  5KS7 A;  4FRY A;  4IY0 A;  3K6E A;  3TDH C;  4FXS A;  3K2V A;  5LXQ A;  4P1G A;  4L27 A;  2UV7 A;  3FWR A;  3PC3 A;  2NYC A;  4L28 A;  2QH1 A;  1PBJ A;  3OCO A;  4COO A;  2QRC E;  3KPB A;  4L0D A;  3T4N C;  5IIP A;  2QR1 E;  4IY2 A;  2YVZ A;  1YAV A;  1Y5H A;  2OUX A;  2OOY E;  5K25 C;  3KXR A;  3L31 A;  2EMQ A;  2O16 A; 
#chains in the Genus database with same CATH topology
 2QRD E;  4O9K A;  2OOX E;  3LQN A;  1XKF A;  4GQY A;  3PC4 A;  3ORG A;  4HG0 A;  2D4Z A;  3LFZ A;  4P1O A;  3TE5 C;  4IYS A;  1O50 A;  3KPC A;  4GQW A;  3KPD A;  5K23 C;  3KH5 A;  2RIF A;  2QRE E;  2P9M A;  2RC3 A;  2RIH A;  3HF7 A;  2UV4 A;  3OCM A;  4ESY B;  3DDJ A;  3SL7 A;  3GBY A;  2UV6 A;  2EF7 A;  2PFI A;  4GQV A;  4DQW A;  3L2B A;  4IY4 A;  4ESY A;  3FNA A;  5K24 C;  3PC2 A;  5K22 B;  2NYE A;  3FV6 A;  2YVY A;  2YZQ A;  4UUU A;  3I8N A;  2ZY9 A;  5MMZ A;  3OI8 A;  3FWS A;  4L3V A;  4NOC A;  2UV5 A;  1PVM A;  2YVX A;  4PCU A;  3LHH A;  2JA3 A;  2QLV C;  3FHM A;  3LV9 A;  2YZI A;  4IY3 A;  5KS7 A;  4FRY A;  2J9L A;  4IY0 A;  3K6E A;  3TDH C;  4FXS A;  3K2V A;  5LXQ A;  4P1G A;  4L27 A;  2UV7 A;  3FWR A;  3PC3 A;  2NYC A;  4L28 A;  2QH1 A;  1PBJ A;  3OCO A;  4COO A;  2QRC E;  3KPB A;  4L0D A;  3T4N C;  5IIP A;  2QR1 E;  4IY2 A;  2YVZ A;  1YAV A;  1Y5H A;  2OUX A;  2OOY E;  5K25 C;  3KXR A;  3L31 A;  2EMQ A;  2O16 A; 
#chains in the Genus database with same CATH homology
 2QRD E;  4O9K A;  2OOX E;  3LQN A;  1XKF A;  4GQY A;  3PC4 A;  3ORG A;  4HG0 A;  2D4Z A;  3LFZ A;  4P1O A;  3TE5 C;  4IYS A;  1O50 A;  3KPC A;  4GQW A;  3KPD A;  5K23 C;  3KH5 A;  2RIF A;  2QRE E;  2P9M A;  2RC3 A;  2RIH A;  3HF7 A;  2UV4 A;  3OCM A;  4ESY B;  3DDJ A;  3SL7 A;  3GBY A;  2UV6 A;  2EF7 A;  2PFI A;  4GQV A;  4DQW A;  3L2B A;  4IY4 A;  4ESY A;  3FNA A;  5K24 C;  3PC2 A;  5K22 B;  2NYE A;  3FV6 A;  2YVY A;  2YZQ A;  4UUU A;  3I8N A;  2ZY9 A;  5MMZ A;  3OI8 A;  3FWS A;  4L3V A;  4NOC A;  2UV5 A;  1PVM A;  2YVX A;  4PCU A;  3LHH A;  2JA3 A;  2QLV C;  3FHM A;  3LV9 A;  2YZI A;  4IY3 A;  5KS7 A;  4FRY A;  2J9L A;  4IY0 A;  3K6E A;  3TDH C;  4FXS A;  3K2V A;  5LXQ A;  4P1G A;  4L27 A;  2UV7 A;  3FWR A;  3PC3 A;  2NYC A;  4L28 A;  2QH1 A;  1PBJ A;  3OCO A;  4COO A;  2QRC E;  3KPB A;  4L0D A;  3T4N C;  5IIP A;  2QR1 E;  4IY2 A;  2YVZ A;  1YAV A;  1Y5H A;  2OUX A;  2OOY E;  5K25 C;  3KXR A;  3L31 A;  2EMQ A;  2O16 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2YVZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations