3DQGA

Peptide-binding domain of heat shock 70 kda protein f, mitochondrial precursor, from caenorhabditis elegans.
Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
148
structure length
148
Chain Sequence
DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQIENMIKEAEKNAAEDAKRKELVEVINQAE
2040608010012014014012010080604020
05101520253035Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Chaperone
source organism Caenorhabditis elegans
publication title X-ray crystal structure of peptide-binding domain of heat shock 70 kDa protein F, mitochondrial precursor, from Caenorhabditis elegans.
rcsb
molecule keywords Heat shock 70 kDa protein F
total genus 35
structure length 148
sequence length 148
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2008-07-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 3dqgA00
3DPPA 4F00A 1CKRA 4R5JA 4HYBA 4R5KA 4JN4A 1DKYA 3C7NA 4EZPA 3C7NB 4EZUA 4EZZA 4EZNA 1DKXA 3DOBA 3D2FA 4EZWA 4EZQA 4JNFA 4R5IA 3DPQA 4B9QA 4EZVA 4F01A 4EZTA 4JWDA 2V7YA 1U00A 2QXLA 2BPRA 1DKZA 3QNJA 4FL9A 1YUWA 4E81A 4EZXA 4JWIA 4EZYA 7HSCA 4HY9A 4WV5A 4R5LA 3N8EA 4JWCA 5E84A 1BPRA 3DQGA 4WV7A 2OP6A 4EZSA 1DG4A 4EZOA 4PO2A 4JNEA 1Q5LA 3H0XA 4JWEA 4R5GA 4EZRA 3DPOA 3D2EA 2KHOA 5TKYA
chains in the Genus database with same CATH superfamily
3DPPA 4F00A 1CKRA 4R5JA 4HYBA 4R5KA 4JN4A 1DKYA 3C7NA 4EZPA 3C7NB 4EZUA 3SBTB 4EZZA 4EZNA 1DKXA 3DOBA 3D2FA 3SBSA 4EZWA 4EZQA 4JNFA 4R5IA 3DPQA 4B9QA 4EZVA 4F01A 4EZTA 4JWDA 4I43A 2V7YA 1U00A 2QXLA 2BPRA 1DKZA 3QNJA 4FL9A 1YUWA 4E81A 4EZXA 4JWIA 4ILHB 4EZYA 4HY9A 7HSCA 4WV5A 4R5LA 3N8EA 4JWCA 5E84A 1BPRA 3ZEFA 3DQGA 4MQDA 2OP6A 4WV7A 4EZSA 1DG4A 4ILGA 4EZOA 4PO2A 4JNEA 1Q5LA 3H0XA 4JWEA 4ILIA 4R5GA 4EZRA 3DPOA 3D2EA 2KHOA 5TKYA
chains in the Genus database with same CATH topology
3DPPA 4F00A 1CKRA 4R5JA 4HYBA 4R5KA 4JN4A 1DKYA 3C7NA 4EZPA 3C7NB 4EZUA 3SBTB 4EZZA 4EZNA 1DKXA 3DOBA 3D2FA 3SBSA 4EZWA 4EZQA 4JNFA 4R5IA 3DPQA 4B9QA 4EZVA 4F01A 4EZTA 4JWDA 4I43A 2V7YA 1U00A 2QXLA 2BPRA 1DKZA 3QNJA 4FL9A 1YUWA 4E81A 4EZXA 4JWIA 4ILHB 4EZYA 4HY9A 7HSCA 4WV5A 4R5LA 3N8EA 4JWCA 5E84A 1BPRA 3ZEFA 3DQGA 4MQDA 2OP6A 4WV7A 4EZSA 1DG4A 4ILGA 4EZOA 4PO2A 4JNEA 1Q5LA 3H0XA 4JWEA 4ILIA 4R5GA 4EZRA 3DPOA 3D2EA 2KHOA 5TKYA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3DPP A;  4F00 A;  1CKR A;  4R5J A;  4HYB A;  4R5K A;  4JN4 A;  1DKY A;  3C7N A;  4EZP A;  3C7N B;  4EZU A;  4EZZ A;  4EZN A;  1DKX A;  3DOB A;  3D2F A;  4EZW A;  4EZQ A;  4JNF A;  4R5I A;  3DPQ A;  4B9Q A;  4EZV A;  4F01 A;  4EZT A;  4JWD A;  2V7Y A;  1U00 A;  2QXL A;  2BPR A;  1DKZ A;  3QNJ A;  4FL9 A;  1YUW A;  4E81 A;  4EZX A;  4JWI A;  4EZY A;  7HSC A;  4HY9 A;  4WV5 A;  4R5L A;  3N8E A;  4JWC A;  5E84 A;  1BPR A;  3DQG A;  4WV7 A;  2OP6 A;  4EZS A;  1DG4 A;  4EZO A;  4PO2 A;  4JNE A;  1Q5L A;  3H0X A;  4JWE A;  4R5G A;  4EZR A;  3DPO A;  3D2E A;  2KHO A;  5TKY A; 
#chains in the Genus database with same CATH topology
 3DPP A;  4F00 A;  1CKR A;  4R5J A;  4HYB A;  4R5K A;  4JN4 A;  1DKY A;  3C7N A;  4EZP A;  3C7N B;  4EZU A;  3SBT B;  4EZZ A;  4EZN A;  1DKX A;  3DOB A;  3D2F A;  3SBS A;  4EZW A;  4EZQ A;  4JNF A;  4R5I A;  3DPQ A;  4B9Q A;  4EZV A;  4F01 A;  4EZT A;  4JWD A;  4I43 A;  2V7Y A;  1U00 A;  2QXL A;  2BPR A;  1DKZ A;  3QNJ A;  4FL9 A;  1YUW A;  4E81 A;  4EZX A;  4JWI A;  4ILH B;  4EZY A;  4HY9 A;  7HSC A;  4WV5 A;  4R5L A;  3N8E A;  4JWC A;  5E84 A;  1BPR A;  3ZEF A;  3DQG A;  4MQD A;  2OP6 A;  4WV7 A;  4EZS A;  1DG4 A;  4ILG A;  4EZO A;  4PO2 A;  4JNE A;  1Q5L A;  3H0X A;  4JWE A;  4ILI A;  4R5G A;  4EZR A;  3DPO A;  3D2E A;  2KHO A;  5TKY A; 
#chains in the Genus database with same CATH homology
 3DPP A;  4F00 A;  1CKR A;  4R5J A;  4HYB A;  4R5K A;  4JN4 A;  1DKY A;  3C7N A;  4EZP A;  3C7N B;  4EZU A;  3SBT B;  4EZZ A;  4EZN A;  1DKX A;  3DOB A;  3D2F A;  3SBS A;  4EZW A;  4EZQ A;  4JNF A;  4R5I A;  3DPQ A;  4B9Q A;  4EZV A;  4F01 A;  4EZT A;  4JWD A;  4I43 A;  2V7Y A;  1U00 A;  2QXL A;  2BPR A;  1DKZ A;  3QNJ A;  4FL9 A;  1YUW A;  4E81 A;  4EZX A;  4JWI A;  4ILH B;  4EZY A;  4HY9 A;  7HSC A;  4WV5 A;  4R5L A;  3N8E A;  4JWC A;  5E84 A;  1BPR A;  3ZEF A;  3DQG A;  4MQD A;  2OP6 A;  4WV7 A;  4EZS A;  1DG4 A;  4ILG A;  4EZO A;  4PO2 A;  4JNE A;  1Q5L A;  3H0X A;  4JWE A;  4ILI A;  4R5G A;  4EZR A;  3DPO A;  3D2E A;  2KHO A;  5TKY A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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