3FWSA

Crystal structure of the cbs domains from the bacillus subtilis ccpn repressor complexed with appnp, phosphate and magnesium ions
Total Genus 41
204060801001201400510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
145
structure length
145
Chain Sequence
TQLLADKLKKLQVKDFQSIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSENEIL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (89-91)TI1 (91-94)TI2 (115-118)AH3 (126-133)S2 (110-115)TI3 (138-141)TI4 (139-142)EMPTYS3 (119-125)AH1 (68-76)3H1 (80-82)TIV1 (133-136)AH2 (96-106)Updating...
connected with : NaN
molecule tags Transcription
source organism Bacillus subtilis
publication title Ligand recognition by the energy sensor domain of the CcpN repressor
rcsb
molecule keywords YqzB protein
total genus 41
structure length 145
sequence length 145
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 3fwsA00
2PFIA 4IY2A 2QH1A 1PVMA 4IY0A 1O50A 2D4ZA 1XKFA 2QR1E 3K2VA 2YVZA 2QREE 2UV6A 1Y5HA 2P9MA 2QRCE 3PC2A 4L3VA 4FRYA 3ORGA 4UUUA 4IYSA 1PBJA 3LFZA 2UV4A 2QLVC 3KPBA 3FNAA 3DDJA 2NYCA 5K22B 2NYEA 3KPCA 4GQVA 5KS7A 3SL7A 4L27A 3LQNA 3I8NA 4FXSA 4IY3A 4O9KA 3K6EA 3FWSA 4GQWA 2RIFA 3OCOA 4DQWA 2OOYE 1YAVA 3PC3A 5K25C 4GQYA 5MMZA 5K23C 4PCUA 3L2BA 4NOCA 3FWRA 4L0DA 2RIHA 3T4NC 3LHHA 3TE5C 2QRDE 3FHMA 4P1OA 5LXQA 2ZY9A 2YZQA 3OI8A 4L28A 3FV6A 4IY4A 5K24C 3GBYA 4HG0A 2UV7A 4P1GA 3KH5A 4ESYA 3LV9A 3PC4A 2YZIA 3L31A 2EF7A 5IIPA 2OOXE 2UV5A 2YVYA 3HF7A 2OUXA 3KPDA 3OCMA 3TDHC 2YVXA 3KXRA 2O16A 4COOA 4ESYB 2EMQA 2RC3A
chains in the Genus database with same CATH superfamily
2PFIA 4IY2A 2QH1A 1PVMA 4IY0A 1O50A 2D4ZA 1XKFA 2QR1E 3K2VA 2YVZA 2J9LA 2QREE 2UV6A 1Y5HA 2P9MA 2QRCE 3PC2A 4L3VA 4FRYA 3ORGA 4UUUA 4IYSA 1PBJA 3LFZA 2UV4A 2QLVC 3KPBA 3FNAA 3DDJA 2NYCA 5K22B 2NYEA 3KPCA 4GQVA 5KS7A 3SL7A 4L27A 3LQNA 3I8NA 4FXSA 4IY3A 4O9KA 3K6EA 3FWSA 4GQWA 2RIFA 3OCOA 4DQWA 2OOYE 1YAVA 3PC3A 5K25C 4GQYA 5MMZA 5K23C 4PCUA 3L2BA 4NOCA 3FWRA 4L0DA 2RIHA 3T4NC 3LHHA 3TE5C 2QRDE 3FHMA 4P1OA 5LXQA 2JA3A 2ZY9A 2YZQA 3OI8A 4L28A 3FV6A 4IY4A 5K24C 3GBYA 4HG0A 2UV7A 4P1GA 3KH5A 4ESYA 3LV9A 3PC4A 2YZIA 3L31A 2EF7A 5IIPA 2OOXE 2UV5A 2YVYA 3HF7A 2OUXA 3KPDA 3OCMA 3TDHC 2YVXA 3KXRA 2O16A 4COOA 4ESYB 2EMQA 2RC3A
chains in the Genus database with same CATH topology
2PFIA 4IY2A 2QH1A 1PVMA 4IY0A 1O50A 2D4ZA 1XKFA 2QR1E 3K2VA 2YVZA 2J9LA 2QREE 2UV6A 1Y5HA 2P9MA 2QRCE 3PC2A 4L3VA 4FRYA 3ORGA 4UUUA 4IYSA 1PBJA 3LFZA 2UV4A 2QLVC 3KPBA 3FNAA 3DDJA 2NYCA 5K22B 2NYEA 3KPCA 4GQVA 5KS7A 3SL7A 4L27A 3LQNA 3I8NA 4FXSA 4IY3A 4O9KA 3K6EA 3FWSA 4GQWA 2RIFA 3OCOA 4DQWA 2OOYE 1YAVA 3PC3A 5K25C 4GQYA 5MMZA 5K23C 4PCUA 3L2BA 4NOCA 3FWRA 4L0DA 2RIHA 3T4NC 3LHHA 3TE5C 2QRDE 3FHMA 4P1OA 5LXQA 2JA3A 2ZY9A 2YZQA 3OI8A 4L28A 3FV6A 4IY4A 5K24C 3GBYA 4HG0A 2UV7A 4P1GA 3KH5A 4ESYA 3LV9A 3PC4A 2YZIA 3L31A 2EF7A 5IIPA 2OOXE 2UV5A 2YVYA 3HF7A 2OUXA 3KPDA 3OCMA 3TDHC 2YVXA 3KXRA 2O16A 4COOA 4ESYB 2EMQA 2RC3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PFI A;  4IY2 A;  2QH1 A;  1PVM A;  4IY0 A;  1O50 A;  2D4Z A;  1XKF A;  2QR1 E;  3K2V A;  2YVZ A;  2QRE E;  2UV6 A;  1Y5H A;  2P9M A;  2QRC E;  3PC2 A;  4L3V A;  4FRY A;  3ORG A;  4UUU A;  4IYS A;  1PBJ A;  3LFZ A;  2UV4 A;  2QLV C;  3KPB A;  3FNA A;  3DDJ A;  2NYC A;  5K22 B;  2NYE A;  3KPC A;  4GQV A;  5KS7 A;  3SL7 A;  4L27 A;  3LQN A;  3I8N A;  4FXS A;  4IY3 A;  4O9K A;  3K6E A;  3FWS A;  4GQW A;  2RIF A;  3OCO A;  4DQW A;  2OOY E;  1YAV A;  3PC3 A;  5K25 C;  4GQY A;  5MMZ A;  5K23 C;  4PCU A;  3L2B A;  4NOC A;  3FWR A;  4L0D A;  2RIH A;  3T4N C;  3LHH A;  3TE5 C;  2QRD E;  3FHM A;  4P1O A;  5LXQ A;  2ZY9 A;  2YZQ A;  3OI8 A;  4L28 A;  3FV6 A;  4IY4 A;  5K24 C;  3GBY A;  4HG0 A;  2UV7 A;  4P1G A;  3KH5 A;  4ESY A;  3LV9 A;  3PC4 A;  2YZI A;  3L31 A;  2EF7 A;  5IIP A;  2OOX E;  2UV5 A;  2YVY A;  3HF7 A;  2OUX A;  3KPD A;  3OCM A;  3TDH C;  2YVX A;  3KXR A;  2O16 A;  4COO A;  4ESY B;  2EMQ A;  2RC3 A; 
#chains in the Genus database with same CATH topology
 2PFI A;  4IY2 A;  2QH1 A;  1PVM A;  4IY0 A;  1O50 A;  2D4Z A;  1XKF A;  2QR1 E;  3K2V A;  2YVZ A;  2J9L A;  2QRE E;  2UV6 A;  1Y5H A;  2P9M A;  2QRC E;  3PC2 A;  4L3V A;  4FRY A;  3ORG A;  4UUU A;  4IYS A;  1PBJ A;  3LFZ A;  2UV4 A;  2QLV C;  3KPB A;  3FNA A;  3DDJ A;  2NYC A;  5K22 B;  2NYE A;  3KPC A;  4GQV A;  5KS7 A;  3SL7 A;  4L27 A;  3LQN A;  3I8N A;  4FXS A;  4IY3 A;  4O9K A;  3K6E A;  3FWS A;  4GQW A;  2RIF A;  3OCO A;  4DQW A;  2OOY E;  1YAV A;  3PC3 A;  5K25 C;  4GQY A;  5MMZ A;  5K23 C;  4PCU A;  3L2B A;  4NOC A;  3FWR A;  4L0D A;  2RIH A;  3T4N C;  3LHH A;  3TE5 C;  2QRD E;  3FHM A;  4P1O A;  5LXQ A;  2JA3 A;  2ZY9 A;  2YZQ A;  3OI8 A;  4L28 A;  3FV6 A;  4IY4 A;  5K24 C;  3GBY A;  4HG0 A;  2UV7 A;  4P1G A;  3KH5 A;  4ESY A;  3LV9 A;  3PC4 A;  2YZI A;  3L31 A;  2EF7 A;  5IIP A;  2OOX E;  2UV5 A;  2YVY A;  3HF7 A;  2OUX A;  3KPD A;  3OCM A;  3TDH C;  2YVX A;  3KXR A;  2O16 A;  4COO A;  4ESY B;  2EMQ A;  2RC3 A; 
#chains in the Genus database with same CATH homology
 2PFI A;  4IY2 A;  2QH1 A;  1PVM A;  4IY0 A;  1O50 A;  2D4Z A;  1XKF A;  2QR1 E;  3K2V A;  2YVZ A;  2J9L A;  2QRE E;  2UV6 A;  1Y5H A;  2P9M A;  2QRC E;  3PC2 A;  4L3V A;  4FRY A;  3ORG A;  4UUU A;  4IYS A;  1PBJ A;  3LFZ A;  2UV4 A;  2QLV C;  3KPB A;  3FNA A;  3DDJ A;  2NYC A;  5K22 B;  2NYE A;  3KPC A;  4GQV A;  5KS7 A;  3SL7 A;  4L27 A;  3LQN A;  3I8N A;  4FXS A;  4IY3 A;  4O9K A;  3K6E A;  3FWS A;  4GQW A;  2RIF A;  3OCO A;  4DQW A;  2OOY E;  1YAV A;  3PC3 A;  5K25 C;  4GQY A;  5MMZ A;  5K23 C;  4PCU A;  3L2B A;  4NOC A;  3FWR A;  4L0D A;  2RIH A;  3T4N C;  3LHH A;  3TE5 C;  2QRD E;  3FHM A;  4P1O A;  5LXQ A;  2JA3 A;  2ZY9 A;  2YZQ A;  3OI8 A;  4L28 A;  3FV6 A;  4IY4 A;  5K24 C;  3GBY A;  4HG0 A;  2UV7 A;  4P1G A;  3KH5 A;  4ESY A;  3LV9 A;  3PC4 A;  2YZI A;  3L31 A;  2EF7 A;  5IIP A;  2OOX E;  2UV5 A;  2YVY A;  3HF7 A;  2OUX A;  3KPD A;  3OCM A;  3TDH C;  2YVX A;  3KXR A;  2O16 A;  4COO A;  4ESY B;  2EMQ A;  2RC3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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