3H0XA

Crystal structure of peptide-binding domain of kar2 protein from saccharomyces cerevisiae
Total Genus 41
204060801001201400510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
150
structure length
150
Chain Sequence
ADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone
source organism Saccharomyces cerevisiae
publication title X-ray crystal structure of peptide-binding domain of Kar2 protein from Saccharomyces cerevisiae.
rcsb
molecule keywords 78 kDa glucose-regulated protein homolog
total genus 41
structure length 150
sequence length 150
ec nomenclature ec 3.6.4.10: Non-chaperonin molecular chaperone ATPase.
pdb deposition date 2009-04-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 3h0xA00
4JWEA 3DQGA 3DOBA 4JN4A 4EZTA 4WV7A 4EZYA 4EZXA 7HSCA 3QNJA 3C7NA 4E81A 4EZWA 5E84A 3DPPA 3H0XA 1YUWA 3C7NB 2QXLA 4HY9A 1DKZA 3DPOA 4EZNA 4EZVA 3DPQA 4R5IA 1U00A 1BPRA 3D2FA 4EZSA 5TKYA 2BPRA 4B9QA 4FL9A 1CKRA 3D2EA 4F01A 1DG4A 4EZOA 4HYBA 1Q5LA 4EZUA 4R5KA 4JWDA 4JWCA 1DKXA 1DKYA 4JNEA 3N8EA 2V7YA 4EZZA 4JWIA 4R5GA 4WV5A 4EZPA 4EZQA 2OP6A 4JNFA 4F00A 4EZRA 4PO2A 2KHOA 4R5JA 4R5LA
chains in the Genus database with same CATH superfamily
4JWEA 3DQGA 3DOBA 4JN4A 3SBTB 4WV7A 4EZTA 4EZYA 4EZXA 7HSCA 3QNJA 3C7NA 4ILGA 4MQDA 5E84A 4E81A 4EZWA 3DPPA 3H0XA 1YUWA 3C7NB 2QXLA 4HY9A 1DKZA 3DPOA 4EZNA 4EZVA 3DPQA 4R5IA 1U00A 1BPRA 3D2FA 3SBSA 4EZSA 4EZRA 5TKYA 2BPRA 4B9QA 4FL9A 1CKRA 3D2EA 4F01A 1DG4A 4EZOA 4HYBA 1Q5LA 4EZUA 4I43A 4R5KA 4JWDA 4JWCA 1DKXA 1DKYA 4JNEA 3N8EA 2V7YA 4EZZA 4JWIA 4R5GA 4WV5A 3ZEFA 4EZPA 2OP6A 4ILHB 4JNFA 4EZQA 4ILIA 2KHOA 4F00A 4PO2A 4R5JA 4R5LA
chains in the Genus database with same CATH topology
4JWEA 3DQGA 3DOBA 4JN4A 3SBTB 4WV7A 4EZTA 4EZYA 4EZXA 7HSCA 3QNJA 3C7NA 4ILGA 4MQDA 5E84A 4E81A 4EZWA 3DPPA 3H0XA 1YUWA 3C7NB 2QXLA 4HY9A 1DKZA 3DPOA 4EZNA 4EZVA 3DPQA 4R5IA 1U00A 1BPRA 3D2FA 3SBSA 4EZSA 4EZRA 5TKYA 2BPRA 4B9QA 4FL9A 1CKRA 3D2EA 4F01A 1DG4A 4EZOA 4HYBA 1Q5LA 4EZUA 4I43A 4R5KA 4JWDA 4JWCA 1DKXA 1DKYA 4JNEA 3N8EA 2V7YA 4EZZA 4JWIA 4R5GA 4WV5A 3ZEFA 4EZPA 2OP6A 4ILHB 4JNFA 4EZQA 4ILIA 2KHOA 4F00A 4PO2A 4R5JA 4R5LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JWE A;  3DQG A;  3DOB A;  4JN4 A;  4EZT A;  4WV7 A;  4EZY A;  4EZX A;  7HSC A;  3QNJ A;  3C7N A;  4E81 A;  4EZW A;  5E84 A;  3DPP A;  3H0X A;  1YUW A;  3C7N B;  2QXL A;  4HY9 A;  1DKZ A;  3DPO A;  4EZN A;  4EZV A;  3DPQ A;  4R5I A;  1U00 A;  1BPR A;  3D2F A;  4EZS A;  5TKY A;  2BPR A;  4B9Q A;  4FL9 A;  1CKR A;  3D2E A;  4F01 A;  1DG4 A;  4EZO A;  4HYB A;  1Q5L A;  4EZU A;  4R5K A;  4JWD A;  4JWC A;  1DKX A;  1DKY A;  4JNE A;  3N8E A;  2V7Y A;  4EZZ A;  4JWI A;  4R5G A;  4WV5 A;  4EZP A;  4EZQ A;  2OP6 A;  4JNF A;  4F00 A;  4EZR A;  4PO2 A;  2KHO A;  4R5J A;  4R5L A; 
#chains in the Genus database with same CATH topology
 4JWE A;  3DQG A;  3DOB A;  4JN4 A;  3SBT B;  4WV7 A;  4EZT A;  4EZY A;  4EZX A;  7HSC A;  3QNJ A;  3C7N A;  4ILG A;  4MQD A;  5E84 A;  4E81 A;  4EZW A;  3DPP A;  3H0X A;  1YUW A;  3C7N B;  2QXL A;  4HY9 A;  1DKZ A;  3DPO A;  4EZN A;  4EZV A;  3DPQ A;  4R5I A;  1U00 A;  1BPR A;  3D2F A;  3SBS A;  4EZS A;  4EZR A;  5TKY A;  2BPR A;  4B9Q A;  4FL9 A;  1CKR A;  3D2E A;  4F01 A;  1DG4 A;  4EZO A;  4HYB A;  1Q5L A;  4EZU A;  4I43 A;  4R5K A;  4JWD A;  4JWC A;  1DKX A;  1DKY A;  4JNE A;  3N8E A;  2V7Y A;  4EZZ A;  4JWI A;  4R5G A;  4WV5 A;  3ZEF A;  4EZP A;  2OP6 A;  4ILH B;  4JNF A;  4EZQ A;  4ILI A;  2KHO A;  4F00 A;  4PO2 A;  4R5J A;  4R5L A; 
#chains in the Genus database with same CATH homology
 4JWE A;  3DQG A;  3DOB A;  4JN4 A;  3SBT B;  4WV7 A;  4EZT A;  4EZY A;  4EZX A;  7HSC A;  3QNJ A;  3C7N A;  4ILG A;  4MQD A;  5E84 A;  4E81 A;  4EZW A;  3DPP A;  3H0X A;  1YUW A;  3C7N B;  2QXL A;  4HY9 A;  1DKZ A;  3DPO A;  4EZN A;  4EZV A;  3DPQ A;  4R5I A;  1U00 A;  1BPR A;  3D2F A;  3SBS A;  4EZS A;  4EZR A;  5TKY A;  2BPR A;  4B9Q A;  4FL9 A;  1CKR A;  3D2E A;  4F01 A;  1DG4 A;  4EZO A;  4HYB A;  1Q5L A;  4EZU A;  4I43 A;  4R5K A;  4JWD A;  4JWC A;  1DKX A;  1DKY A;  4JNE A;  3N8E A;  2V7Y A;  4EZZ A;  4JWI A;  4R5G A;  4WV5 A;  3ZEF A;  4EZP A;  2OP6 A;  4ILH B;  4JNF A;  4EZQ A;  4ILI A;  2KHO A;  4F00 A;  4PO2 A;  4R5J A;  4R5L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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