3KPD | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	119
structure length	119
Chain Sequence	TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 119 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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119 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Unknown function
source organism	Methanocaldococcus jannaschii
publication title	Binding of S-Methyl-5'-Thioadenosine and S-Adenosyl-l-Methionine to Protein MJ0100 Triggers an Open-to-Closed Conformational Change in Its CBS Motif Pair. pubmed doi rcsb
molecule keywords	Uncharacterized protein MJ0100
total genus	27
structure length	119
sequence length	119
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2009-11-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00571	CBS	CBS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.580.10	Alpha Beta	Roll	CBS-domain	CBS-domain	3kpdA00

4L3VA 3KXRA 1O50A 2YZQA 3OCMA 2D4ZA 3TDHC 2OOXE 1YAVA 2UV6A 5K22B 3FWSA 4FRYA 4IY4A 3L2BA 3HF7A 5K24C 1XKFA 2YVXA 3DDJA 3TE5C 2ZY9A 3SL7A 3PC3A 2YVYA 2O16A 2QLVC 4P1OA 3PC2A 2PFIA 2YVZA 4L0DA 2NYEA 4IY3A 4GQYA 4IYSA 4FXSA 3LHHA 3L31A 1PVMA 3FV6A 4L27A 4UUUA 2EMQA 1PBJA 3OI8A 2YZIA 4O9KA 3K2VA 3LQNA 4GQWA 3GBYA 4DQWA 5IIPA 4HG0A 2RC3A 3OCOA 3K6EA 4GQVA 5K25C 2OOYE 5LXQA 3KPBA 4NOCA 2RIFA 2UV7A 3LV9A 3ORGA 2QRCE 2QH1A 2QRDE 3T4NC 2EF7A 4PCUA 2UV4A 2NYCA 1Y5HA 5KS7A 3KPDA 4L28A 3I8NA 3FWRA 5K23C 4ESYA 2QR1E 2RIHA 3KH5A 4IY0A 4ESYB 4COOA 5MMZA 2QREE 4P1GA 3LFZA 4IY2A 3KPCA 3FHMA 3FNAA 2OUXA 2P9MA 3PC4A 2UV5A
chains in the Genus database with same CATH superfamily

4L3VA 3KXRA 1O50A 2YZQA 3OCMA 2D4ZA 3TDHC 2OOXE 1YAVA 2UV6A 5K22B 3FWSA 4FRYA 4IY4A 3L2BA 3HF7A 5K24C 1XKFA 2YVXA 3DDJA 3TE5C 2ZY9A 3SL7A 3PC3A 2YVYA 2O16A 2QLVC 4P1OA 3PC2A 2PFIA 2YVZA 4L0DA 2NYEA 4IY3A 4GQYA 4IYSA 4FXSA 3LHHA 3L31A 1PVMA 3FV6A 4L27A 4UUUA 2EMQA 1PBJA 3OI8A 2JA3A 2YZIA 3K2VA 4O9KA 3LQNA 4GQWA 3GBYA 4DQWA 5IIPA 4HG0A 2RC3A 3OCOA 3K6EA 4GQVA 5K25C 2OOYE 5LXQA 3KPBA 4NOCA 2RIFA 2UV7A 3LV9A 3ORGA 2QRCE 2QH1A 2QRDE 3T4NC 2EF7A 4PCUA 2UV4A 2NYCA 1Y5HA 5KS7A 3KPDA 2J9LA 4L28A 3I8NA 3FWRA 5K23C 4ESYA 2QR1E 2RIHA 3KH5A 4IY0A 4ESYB 4COOA 5MMZA 2QREE 4P1GA 3LFZA 4IY2A 3KPCA 3FHMA 3FNAA 2OUXA 2P9MA 3PC4A 2UV5A
chains in the Genus database with same CATH topology

4L3VA 3KXRA 1O50A 2YZQA 3OCMA 2D4ZA 3TDHC 2OOXE 1YAVA 2UV6A 5K22B 3FWSA 4FRYA 4IY4A 3L2BA 3HF7A 5K24C 1XKFA 2YVXA 3DDJA 3TE5C 2ZY9A 3SL7A 3PC3A 2YVYA 2O16A 2QLVC 4P1OA 3PC2A 2PFIA 2YVZA 4L0DA 2NYEA 4IY3A 4GQYA 4IYSA 4FXSA 3LHHA 3L31A 1PVMA 3FV6A 4L27A 4UUUA 2EMQA 1PBJA 3OI8A 2JA3A 2YZIA 3K2VA 4O9KA 3LQNA 4GQWA 3GBYA 4DQWA 5IIPA 4HG0A 2RC3A 3OCOA 3K6EA 4GQVA 5K25C 2OOYE 5LXQA 3KPBA 4NOCA 2RIFA 2UV7A 3LV9A 3ORGA 2QRCE 2QH1A 2QRDE 3T4NC 2EF7A 4PCUA 2UV4A 2NYCA 1Y5HA 5KS7A 3KPDA 2J9LA 4L28A 3I8NA 3FWRA 5K23C 4ESYA 2QR1E 2RIHA 3KH5A 4IY0A 4ESYB 4COOA 5MMZA 2QREE 4P1GA 3LFZA 4IY2A 3KPCA 3FHMA 3FNAA 2OUXA 2P9MA 3PC4A 2UV5A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4L3V A;  3KXR A;  1O50 A;  2YZQ A;  3OCM A;  2D4Z A;  3TDH C;  2OOX E;  1YAV A;  2UV6 A;  5K22 B;  3FWS A;  4FRY A;  4IY4 A;  3L2B A;  3HF7 A;  5K24 C;  1XKF A;  2YVX A;  3DDJ A;  3TE5 C;  2ZY9 A;  3SL7 A;  3PC3 A;  2YVY A;  2O16 A;  2QLV C;  4P1O A;  3PC2 A;  2PFI A;  2YVZ A;  4L0D A;  2NYE A;  4IY3 A;  4GQY A;  4IYS A;  4FXS A;  3LHH A;  3L31 A;  1PVM A;  3FV6 A;  4L27 A;  4UUU A;  2EMQ A;  1PBJ A;  3OI8 A;  2YZI A;  4O9K A;  3K2V A;  3LQN A;  4GQW A;  3GBY A;  4DQW A;  5IIP A;  4HG0 A;  2RC3 A;  3OCO A;  3K6E A;  4GQV A;  5K25 C;  2OOY E;  5LXQ A;  3KPB A;  4NOC A;  2RIF A;  2UV7 A;  3LV9 A;  3ORG A;  2QRC E;  2QH1 A;  2QRD E;  3T4N C;  2EF7 A;  4PCU A;  2UV4 A;  2NYC A;  1Y5H A;  5KS7 A;  3KPD A;  4L28 A;  3I8N A;  3FWR A;  5K23 C;  4ESY A;  2QR1 E;  2RIH A;  3KH5 A;  4IY0 A;  4ESY B;  4COO A;  5MMZ A;  2QRE E;  4P1G A;  3LFZ A;  4IY2 A;  3KPC A;  3FHM A;  3FNA A;  2OUX A;  2P9M A;  3PC4 A;  2UV5 A; 
#chains in the Genus database with same CATH topology
 4L3V A;  3KXR A;  1O50 A;  2YZQ A;  3OCM A;  2D4Z A;  3TDH C;  2OOX E;  1YAV A;  2UV6 A;  5K22 B;  3FWS A;  4FRY A;  4IY4 A;  3L2B A;  3HF7 A;  5K24 C;  1XKF A;  2YVX A;  3DDJ A;  3TE5 C;  2ZY9 A;  3SL7 A;  3PC3 A;  2YVY A;  2O16 A;  2QLV C;  4P1O A;  3PC2 A;  2PFI A;  2YVZ A;  4L0D A;  2NYE A;  4IY3 A;  4GQY A;  4IYS A;  4FXS A;  3LHH A;  3L31 A;  1PVM A;  3FV6 A;  4L27 A;  4UUU A;  2EMQ A;  1PBJ A;  3OI8 A;  2JA3 A;  2YZI A;  3K2V A;  4O9K A;  3LQN A;  4GQW A;  3GBY A;  4DQW A;  5IIP A;  4HG0 A;  2RC3 A;  3OCO A;  3K6E A;  4GQV A;  5K25 C;  2OOY E;  5LXQ A;  3KPB A;  4NOC A;  2RIF A;  2UV7 A;  3LV9 A;  3ORG A;  2QRC E;  2QH1 A;  2QRD E;  3T4N C;  2EF7 A;  4PCU A;  2UV4 A;  2NYC A;  1Y5H A;  5KS7 A;  3KPD A;  2J9L A;  4L28 A;  3I8N A;  3FWR A;  5K23 C;  4ESY A;  2QR1 E;  2RIH A;  3KH5 A;  4IY0 A;  4ESY B;  4COO A;  5MMZ A;  2QRE E;  4P1G A;  3LFZ A;  4IY2 A;  3KPC A;  3FHM A;  3FNA A;  2OUX A;  2P9M A;  3PC4 A;  2UV5 A; 
#chains in the Genus database with same CATH homology
 4L3V A;  3KXR A;  1O50 A;  2YZQ A;  3OCM A;  2D4Z A;  3TDH C;  2OOX E;  1YAV A;  2UV6 A;  5K22 B;  3FWS A;  4FRY A;  4IY4 A;  3L2B A;  3HF7 A;  5K24 C;  1XKF A;  2YVX A;  3DDJ A;  3TE5 C;  2ZY9 A;  3SL7 A;  3PC3 A;  2YVY A;  2O16 A;  2QLV C;  4P1O A;  3PC2 A;  2PFI A;  2YVZ A;  4L0D A;  2NYE A;  4IY3 A;  4GQY A;  4IYS A;  4FXS A;  3LHH A;  3L31 A;  1PVM A;  3FV6 A;  4L27 A;  4UUU A;  2EMQ A;  1PBJ A;  3OI8 A;  2JA3 A;  2YZI A;  3K2V A;  4O9K A;  3LQN A;  4GQW A;  3GBY A;  4DQW A;  5IIP A;  4HG0 A;  2RC3 A;  3OCO A;  3K6E A;  4GQV A;  5K25 C;  2OOY E;  5LXQ A;  3KPB A;  4NOC A;  2RIF A;  2UV7 A;  3LV9 A;  3ORG A;  2QRC E;  2QH1 A;  2QRD E;  3T4N C;  2EF7 A;  4PCU A;  2UV4 A;  2NYC A;  1Y5H A;  5KS7 A;  3KPD A;  2J9L A;  4L28 A;  3I8N A;  3FWR A;  5K23 C;  4ESY A;  2QR1 E;  2RIH A;  3KH5 A;  4IY0 A;  4ESY B;  4COO A;  5MMZ A;  2QRE E;  4P1G A;  3LFZ A;  4IY2 A;  3KPC A;  3FHM A;  3FNA A;  2OUX A;  2P9M A;  3PC4 A;  2UV5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3KPDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations