3LV9A

Crystal structure of cbs domain of a putative transporter from clostridium difficile 630
Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
130
structure length
130
Chain Sequence
FEFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINENKIELEEILRDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGEI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI8 (122-125)TI1 (15-18)AH1 (41-50)3H1 (22-24)TI3 (17-20)TI6 (62-65)S4 (66-71)S1 (27-28)TI4 (28-31)O1 (34-59)S2 (35-36)S3 (55-59)TI5 (36-39)S6 (117-122)AH2 (72-82)3H2 (87-89)S5 (95-98)TI7 (98-101)S7 (126-132)TI2 (16-19)AH3 (103-113)TIV1 (59-62)Updating...
connected with : NaN
molecule tags Membrane protein
source organism Clostridium difficile 630
publication title Crystal structure of CBS domain of a putative transporter from Clostridium difficile 630
rcsb
molecule keywords Putative transporter
total genus 40
structure length 130
sequence length 130
ec nomenclature
pdb deposition date 2010-02-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 3lv9A00
3KH5A 1XKFA 3TE5C 2YZQA 3LFZA 3FWSA 2QLVC 3PC2A 3T4NC 3DDJA 5LXQA 2NYEA 3KPBA 2YVZA 3LHHA 4O9KA 4ESYB 5IIPA 2QRCE 2UV6A 3HF7A 5K22B 2UV5A 4IY0A 2QR1E 2UV4A 2QRDE 2RIFA 3FWRA 3ORGA 4NOCA 4COOA 3L2BA 5K25C 2PFIA 4HG0A 4FRYA 2ZY9A 4ESYA 1O50A 2O16A 3I8NA 2OOYE 2RIHA 4GQWA 4L0DA 5MMZA 2EF7A 4IYSA 3KXRA 2EMQA 1PVMA 2OOXE 4L28A 3LQNA 3KPDA 3PC3A 3GBYA 3FV6A 5KS7A 3OCMA 3KPCA 2YVYA 1PBJA 4PCUA 2P9MA 2YVXA 4UUUA 1Y5HA 2RC3A 3L31A 2NYCA 2UV7A 3LV9A 4P1OA 4GQYA 4P1GA 4IY4A 2OUXA 2D4ZA 3FNAA 2QREE 3K6EA 3OI8A 4IY3A 4FXSA 3K2VA 4IY2A 3SL7A 5K23C 3FHMA 4GQVA 4L27A 4L3VA 2YZIA 3PC4A 2QH1A 5K24C 1YAVA 3TDHC 3OCOA 4DQWA
chains in the Genus database with same CATH superfamily
3KH5A 1XKFA 3TE5C 2YZQA 3LFZA 3FWSA 2QLVC 3PC2A 3T4NC 3DDJA 5LXQA 2NYEA 3KPBA 2YVZA 3LHHA 4O9KA 4ESYB 5IIPA 2J9LA 2QRCE 2UV6A 3HF7A 5K22B 2UV5A 4IY0A 2QR1E 2UV4A 2QRDE 2RIFA 3FWRA 3ORGA 4NOCA 4COOA 3L2BA 5K25C 2PFIA 4HG0A 4FRYA 2ZY9A 4ESYA 1O50A 2O16A 3I8NA 2OOYE 2RIHA 4GQWA 4L0DA 5MMZA 2EF7A 4IYSA 3KXRA 2EMQA 1PVMA 2OOXE 4L28A 3LQNA 3KPDA 3PC3A 3GBYA 3FV6A 5KS7A 3OCMA 3KPCA 2YVYA 1PBJA 4PCUA 2P9MA 2YVXA 4UUUA 1Y5HA 2RC3A 3L31A 2NYCA 2UV7A 3LV9A 4P1OA 4GQYA 4P1GA 4IY4A 2OUXA 2D4ZA 3FNAA 2QREE 3K6EA 3OI8A 4IY3A 4FXSA 3K2VA 4IY2A 3SL7A 5K23C 3FHMA 4GQVA 4L27A 4L3VA 2YZIA 3PC4A 2QH1A 2JA3A 5K24C 1YAVA 3TDHC 3OCOA 4DQWA
chains in the Genus database with same CATH topology
3KH5A 1XKFA 3TE5C 2YZQA 3LFZA 3FWSA 2QLVC 3PC2A 3T4NC 3DDJA 5LXQA 2NYEA 3KPBA 2YVZA 3LHHA 4O9KA 4ESYB 5IIPA 2J9LA 2QRCE 2UV6A 3HF7A 5K22B 2UV5A 4IY0A 2QR1E 2UV4A 2QRDE 2RIFA 3FWRA 3ORGA 4NOCA 4COOA 3L2BA 5K25C 2PFIA 4HG0A 4FRYA 2ZY9A 4ESYA 1O50A 2O16A 3I8NA 2OOYE 2RIHA 4GQWA 4L0DA 5MMZA 2EF7A 4IYSA 3KXRA 2EMQA 1PVMA 2OOXE 4L28A 3LQNA 3KPDA 3PC3A 3GBYA 3FV6A 5KS7A 3OCMA 3KPCA 2YVYA 1PBJA 4PCUA 2P9MA 2YVXA 4UUUA 1Y5HA 2RC3A 3L31A 2NYCA 2UV7A 3LV9A 4P1OA 4GQYA 4P1GA 4IY4A 2OUXA 2D4ZA 3FNAA 2QREE 3K6EA 3OI8A 4IY3A 4FXSA 3K2VA 4IY2A 3SL7A 5K23C 3FHMA 4GQVA 4L27A 4L3VA 2YZIA 3PC4A 2QH1A 2JA3A 5K24C 1YAVA 3TDHC 3OCOA 4DQWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KH5 A;  1XKF A;  3TE5 C;  2YZQ A;  3LFZ A;  3FWS A;  2QLV C;  3PC2 A;  3T4N C;  3DDJ A;  5LXQ A;  2NYE A;  3KPB A;  2YVZ A;  3LHH A;  4O9K A;  4ESY B;  5IIP A;  2QRC E;  2UV6 A;  3HF7 A;  5K22 B;  2UV5 A;  4IY0 A;  2QR1 E;  2UV4 A;  2QRD E;  2RIF A;  3FWR A;  3ORG A;  4NOC A;  4COO A;  3L2B A;  5K25 C;  2PFI A;  4HG0 A;  4FRY A;  2ZY9 A;  4ESY A;  1O50 A;  2O16 A;  3I8N A;  2OOY E;  2RIH A;  4GQW A;  4L0D A;  5MMZ A;  2EF7 A;  4IYS A;  3KXR A;  2EMQ A;  1PVM A;  2OOX E;  4L28 A;  3LQN A;  3KPD A;  3PC3 A;  3GBY A;  3FV6 A;  5KS7 A;  3OCM A;  3KPC A;  2YVY A;  1PBJ A;  4PCU A;  2P9M A;  2YVX A;  4UUU A;  1Y5H A;  2RC3 A;  3L31 A;  2NYC A;  2UV7 A;  3LV9 A;  4P1O A;  4GQY A;  4P1G A;  4IY4 A;  2OUX A;  2D4Z A;  3FNA A;  2QRE E;  3K6E A;  3OI8 A;  4IY3 A;  4FXS A;  3K2V A;  4IY2 A;  3SL7 A;  5K23 C;  3FHM A;  4GQV A;  4L27 A;  4L3V A;  2YZI A;  3PC4 A;  2QH1 A;  5K24 C;  1YAV A;  3TDH C;  3OCO A;  4DQW A; 
#chains in the Genus database with same CATH topology
 3KH5 A;  1XKF A;  3TE5 C;  2YZQ A;  3LFZ A;  3FWS A;  2QLV C;  3PC2 A;  3T4N C;  3DDJ A;  5LXQ A;  2NYE A;  3KPB A;  2YVZ A;  3LHH A;  4O9K A;  4ESY B;  5IIP A;  2J9L A;  2QRC E;  2UV6 A;  3HF7 A;  5K22 B;  2UV5 A;  4IY0 A;  2QR1 E;  2UV4 A;  2QRD E;  2RIF A;  3FWR A;  3ORG A;  4NOC A;  4COO A;  3L2B A;  5K25 C;  2PFI A;  4HG0 A;  4FRY A;  2ZY9 A;  4ESY A;  1O50 A;  2O16 A;  3I8N A;  2OOY E;  2RIH A;  4GQW A;  4L0D A;  5MMZ A;  2EF7 A;  4IYS A;  3KXR A;  2EMQ A;  1PVM A;  2OOX E;  4L28 A;  3LQN A;  3KPD A;  3PC3 A;  3GBY A;  3FV6 A;  5KS7 A;  3OCM A;  3KPC A;  2YVY A;  1PBJ A;  4PCU A;  2P9M A;  2YVX A;  4UUU A;  1Y5H A;  2RC3 A;  3L31 A;  2NYC A;  2UV7 A;  3LV9 A;  4P1O A;  4GQY A;  4P1G A;  4IY4 A;  2OUX A;  2D4Z A;  3FNA A;  2QRE E;  3K6E A;  3OI8 A;  4IY3 A;  4FXS A;  3K2V A;  4IY2 A;  3SL7 A;  5K23 C;  3FHM A;  4GQV A;  4L27 A;  4L3V A;  2YZI A;  3PC4 A;  2QH1 A;  2JA3 A;  5K24 C;  1YAV A;  3TDH C;  3OCO A;  4DQW A; 
#chains in the Genus database with same CATH homology
 3KH5 A;  1XKF A;  3TE5 C;  2YZQ A;  3LFZ A;  3FWS A;  2QLV C;  3PC2 A;  3T4N C;  3DDJ A;  5LXQ A;  2NYE A;  3KPB A;  2YVZ A;  3LHH A;  4O9K A;  4ESY B;  5IIP A;  2J9L A;  2QRC E;  2UV6 A;  3HF7 A;  5K22 B;  2UV5 A;  4IY0 A;  2QR1 E;  2UV4 A;  2QRD E;  2RIF A;  3FWR A;  3ORG A;  4NOC A;  4COO A;  3L2B A;  5K25 C;  2PFI A;  4HG0 A;  4FRY A;  2ZY9 A;  4ESY A;  1O50 A;  2O16 A;  3I8N A;  2OOY E;  2RIH A;  4GQW A;  4L0D A;  5MMZ A;  2EF7 A;  4IYS A;  3KXR A;  2EMQ A;  1PVM A;  2OOX E;  4L28 A;  3LQN A;  3KPD A;  3PC3 A;  3GBY A;  3FV6 A;  5KS7 A;  3OCM A;  3KPC A;  2YVY A;  1PBJ A;  4PCU A;  2P9M A;  2YVX A;  4UUU A;  1Y5H A;  2RC3 A;  3L31 A;  2NYC A;  2UV7 A;  3LV9 A;  4P1O A;  4GQY A;  4P1G A;  4IY4 A;  2OUX A;  2D4Z A;  3FNA A;  2QRE E;  3K6E A;  3OI8 A;  4IY3 A;  4FXS A;  3K2V A;  4IY2 A;  3SL7 A;  5K23 C;  3FHM A;  4GQV A;  4L27 A;  4L3V A;  2YZI A;  3PC4 A;  2QH1 A;  2JA3 A;  5K24 C;  1YAV A;  3TDH C;  3OCO A;  4DQW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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