3OCMA

The crystal structure of a domain from a possible membrane protein of bordetella parapertussis
Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
149
structure length
149
Chain Sequence
AFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRNRLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDEDELP
2040608010012014014012010080604020
051015202530Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein
source organism Bordetella parapertussis
publication title The crystal structure of a domain from a possible membrane protein of Bordetella parapertussis
rcsb
molecule keywords Putative membrane protein
total genus 33
structure length 149
sequence length 149
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-08-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 3ocmA00
4GQYA 4P1GA 3KPCA 4IYSA 2NYEA 2UV6A 2D4ZA 4IY3A 4ESYA 4ESYB 3LQNA 3OCOA 3KXRA 2RIHA 3LHHA 4GQWA 2QRDE 4FRYA 2UV5A 3PC4A 2RC3A 2YVXA 4P1OA 3L31A 5K23C 4L0DA 3FHMA 3FV6A 2EF7A 2YVZA 4PCUA 3OI8A 1Y5HA 2QR1E 3ORGA 3DDJA 4COOA 2OUXA 5MMZA 3KPBA 3TDHC 1PBJA 3FWSA 2OOXE 2YZQA 3FWRA 4UUUA 2ZY9A 4HG0A 2EMQA 3LV9A 4IY2A 4O9KA 2RIFA 2PFIA 3K6EA 3SL7A 3KH5A 4L3VA 2OOYE 2QRCE 2UV7A 5LXQA 4IY0A 5K25C 4GQVA 1YAVA 3FNAA 3GBYA 1O50A 3LFZA 1PVMA 2YZIA 3OCMA 1XKFA 4IY4A 3PC3A 3K2VA 2QLVC 5IIPA 4L28A 2UV4A 3KPDA 5K24C 2P9MA 3L2BA 4FXSA 2YVYA 3I8NA 4DQWA 2QREE 3PC2A 2QH1A 3T4NC 5KS7A 4L27A 4NOCA 5K22B 3HF7A 3TE5C 2NYCA 2O16A
chains in the Genus database with same CATH superfamily
4GQYA 4P1GA 3KPCA 4IYSA 2NYEA 2UV6A 2D4ZA 4IY3A 4ESYA 4ESYB 3LQNA 3OCOA 3KXRA 2RIHA 3LHHA 4GQWA 2QRDE 4FRYA 2UV5A 3PC4A 2RC3A 2YVXA 4P1OA 3L31A 5K23C 4L0DA 2JA3A 3FHMA 3FV6A 2EF7A 2YVZA 4PCUA 3OI8A 1Y5HA 2QR1E 3ORGA 3DDJA 4COOA 2OUXA 5MMZA 3KPBA 3TDHC 1PBJA 3FWSA 2OOXE 2YZQA 3FWRA 4UUUA 2ZY9A 4HG0A 2EMQA 3LV9A 4IY2A 4O9KA 2RIFA 2PFIA 3K6EA 3SL7A 3KH5A 4L3VA 2OOYE 2QRCE 2UV7A 5LXQA 4IY0A 5K25C 4GQVA 1YAVA 3FNAA 3GBYA 1O50A 3LFZA 1PVMA 2YZIA 3OCMA 1XKFA 4IY4A 3PC3A 3K2VA 2QLVC 5IIPA 4L28A 2UV4A 3KPDA 5K24C 2J9LA 2P9MA 3L2BA 4FXSA 2YVYA 3I8NA 4DQWA 2QREE 3PC2A 2QH1A 3T4NC 5KS7A 4L27A 4NOCA 5K22B 3HF7A 3TE5C 2NYCA 2O16A
chains in the Genus database with same CATH topology
4GQYA 4P1GA 3KPCA 4IYSA 2NYEA 2UV6A 2D4ZA 4IY3A 4ESYA 4ESYB 3LQNA 3OCOA 3KXRA 2RIHA 3LHHA 4GQWA 2QRDE 4FRYA 2UV5A 3PC4A 2RC3A 2YVXA 4P1OA 3L31A 5K23C 4L0DA 2JA3A 3FHMA 3FV6A 2EF7A 2YVZA 4PCUA 3OI8A 1Y5HA 2QR1E 3ORGA 3DDJA 4COOA 2OUXA 5MMZA 3KPBA 3TDHC 1PBJA 3FWSA 2OOXE 2YZQA 3FWRA 4UUUA 2ZY9A 4HG0A 2EMQA 3LV9A 4IY2A 4O9KA 2RIFA 2PFIA 3K6EA 3SL7A 3KH5A 4L3VA 2OOYE 2QRCE 2UV7A 5LXQA 4IY0A 5K25C 4GQVA 1YAVA 3FNAA 3GBYA 1O50A 3LFZA 1PVMA 2YZIA 3OCMA 1XKFA 4IY4A 3PC3A 3K2VA 2QLVC 5IIPA 4L28A 2UV4A 3KPDA 5K24C 2J9LA 2P9MA 3L2BA 4FXSA 2YVYA 3I8NA 4DQWA 2QREE 3PC2A 2QH1A 3T4NC 5KS7A 4L27A 4NOCA 5K22B 3HF7A 3TE5C 2NYCA 2O16A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GQY A;  4P1G A;  3KPC A;  4IYS A;  2NYE A;  2UV6 A;  2D4Z A;  4IY3 A;  4ESY A;  4ESY B;  3LQN A;  3OCO A;  3KXR A;  2RIH A;  3LHH A;  4GQW A;  2QRD E;  4FRY A;  2UV5 A;  3PC4 A;  2RC3 A;  2YVX A;  4P1O A;  3L31 A;  5K23 C;  4L0D A;  3FHM A;  3FV6 A;  2EF7 A;  2YVZ A;  4PCU A;  3OI8 A;  1Y5H A;  2QR1 E;  3ORG A;  3DDJ A;  4COO A;  2OUX A;  5MMZ A;  3KPB A;  3TDH C;  1PBJ A;  3FWS A;  2OOX E;  2YZQ A;  3FWR A;  4UUU A;  2ZY9 A;  4HG0 A;  2EMQ A;  3LV9 A;  4IY2 A;  4O9K A;  2RIF A;  2PFI A;  3K6E A;  3SL7 A;  3KH5 A;  4L3V A;  2OOY E;  2QRC E;  2UV7 A;  5LXQ A;  4IY0 A;  5K25 C;  4GQV A;  1YAV A;  3FNA A;  3GBY A;  1O50 A;  3LFZ A;  1PVM A;  2YZI A;  3OCM A;  1XKF A;  4IY4 A;  3PC3 A;  3K2V A;  2QLV C;  5IIP A;  4L28 A;  2UV4 A;  3KPD A;  5K24 C;  2P9M A;  3L2B A;  4FXS A;  2YVY A;  3I8N A;  4DQW A;  2QRE E;  3PC2 A;  2QH1 A;  3T4N C;  5KS7 A;  4L27 A;  4NOC A;  5K22 B;  3HF7 A;  3TE5 C;  2NYC A;  2O16 A; 
#chains in the Genus database with same CATH topology
 4GQY A;  4P1G A;  3KPC A;  4IYS A;  2NYE A;  2UV6 A;  2D4Z A;  4IY3 A;  4ESY A;  4ESY B;  3LQN A;  3OCO A;  3KXR A;  2RIH A;  3LHH A;  4GQW A;  2QRD E;  4FRY A;  2UV5 A;  3PC4 A;  2RC3 A;  2YVX A;  4P1O A;  3L31 A;  5K23 C;  4L0D A;  2JA3 A;  3FHM A;  3FV6 A;  2EF7 A;  2YVZ A;  4PCU A;  3OI8 A;  1Y5H A;  2QR1 E;  3ORG A;  3DDJ A;  4COO A;  2OUX A;  5MMZ A;  3KPB A;  3TDH C;  1PBJ A;  3FWS A;  2OOX E;  2YZQ A;  3FWR A;  4UUU A;  2ZY9 A;  4HG0 A;  2EMQ A;  3LV9 A;  4IY2 A;  4O9K A;  2RIF A;  2PFI A;  3K6E A;  3SL7 A;  3KH5 A;  4L3V A;  2OOY E;  2QRC E;  2UV7 A;  5LXQ A;  4IY0 A;  5K25 C;  4GQV A;  1YAV A;  3FNA A;  3GBY A;  1O50 A;  3LFZ A;  1PVM A;  2YZI A;  3OCM A;  1XKF A;  4IY4 A;  3PC3 A;  3K2V A;  2QLV C;  5IIP A;  4L28 A;  2UV4 A;  3KPD A;  5K24 C;  2J9L A;  2P9M A;  3L2B A;  4FXS A;  2YVY A;  3I8N A;  4DQW A;  2QRE E;  3PC2 A;  2QH1 A;  3T4N C;  5KS7 A;  4L27 A;  4NOC A;  5K22 B;  3HF7 A;  3TE5 C;  2NYC A;  2O16 A; 
#chains in the Genus database with same CATH homology
 4GQY A;  4P1G A;  3KPC A;  4IYS A;  2NYE A;  2UV6 A;  2D4Z A;  4IY3 A;  4ESY A;  4ESY B;  3LQN A;  3OCO A;  3KXR A;  2RIH A;  3LHH A;  4GQW A;  2QRD E;  4FRY A;  2UV5 A;  3PC4 A;  2RC3 A;  2YVX A;  4P1O A;  3L31 A;  5K23 C;  4L0D A;  2JA3 A;  3FHM A;  3FV6 A;  2EF7 A;  2YVZ A;  4PCU A;  3OI8 A;  1Y5H A;  2QR1 E;  3ORG A;  3DDJ A;  4COO A;  2OUX A;  5MMZ A;  3KPB A;  3TDH C;  1PBJ A;  3FWS A;  2OOX E;  2YZQ A;  3FWR A;  4UUU A;  2ZY9 A;  4HG0 A;  2EMQ A;  3LV9 A;  4IY2 A;  4O9K A;  2RIF A;  2PFI A;  3K6E A;  3SL7 A;  3KH5 A;  4L3V A;  2OOY E;  2QRC E;  2UV7 A;  5LXQ A;  4IY0 A;  5K25 C;  4GQV A;  1YAV A;  3FNA A;  3GBY A;  1O50 A;  3LFZ A;  1PVM A;  2YZI A;  3OCM A;  1XKF A;  4IY4 A;  3PC3 A;  3K2V A;  2QLV C;  5IIP A;  4L28 A;  2UV4 A;  3KPD A;  5K24 C;  2J9L A;  2P9M A;  3L2B A;  4FXS A;  2YVY A;  3I8N A;  4DQW A;  2QRE E;  3PC2 A;  2QH1 A;  3T4N C;  5KS7 A;  4L27 A;  4NOC A;  5K22 B;  3HF7 A;  3TE5 C;  2NYC A;  2O16 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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