3SL7A

Crystal structure of cbs-pair protein, cbsx2 from arabidopsis thaliana
Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
160
structure length
141
Chain Sequence
TGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (98-108)EMPTYS1 (112-116)S2 (122-127)AH2 (128-132)TI2 (117-120)TI1 (93-96)3H1 (79-81)Updating...
connected with : NaN
molecule tags Membrane protein
source organism Arabidopsis thaliana
publication title Single cystathionine beta-synthase domain-containing proteins modulate development by regulating the thioredoxin system in Arabidopsis
pubmed doi rcsb
molecule keywords CBS domain-containing protein CBSX2
total genus 39
structure length 141
sequence length 160
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-06-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 3sl7A00
3L31A 4FXSA 4L27A 4FRYA 3FNAA 4ESYB 3FHMA 3PC3A 3TDHC 3LQNA 2NYCA 3FWRA 4IY2A 3PC4A 3L2BA 1O50A 3I8NA 3OCMA 4PCUA 2ZY9A 2OOYE 4COOA 2YZIA 4L0DA 2EMQA 5K22B 2RIFA 3DDJA 3T4NC 3KPBA 1YAVA 2QRDE 2P9MA 4L3VA 3LV9A 2QLVC 2RIHA 2EF7A 1PBJA 3KXRA 2D4ZA 2QH1A 4GQWA 2UV7A 2QR1E 2UV6A 3OCOA 3FV6A 1XKFA 3PC2A 3KPDA 2PFIA 3ORGA 2YVXA 4IYSA 2YZQA 3LHHA 3OI8A 1Y5HA 2RC3A 4IY4A 4P1GA 4GQVA 3GBYA 5IIPA 4GQYA 2YVYA 4NOCA 3FWSA 5KS7A 3KH5A 3SL7A 4ESYA 4IY0A 1PVMA 3LFZA 3K6EA 5K24C 2UV5A 5LXQA 2OUXA 4HG0A 2QRCE 5K25C 2UV4A 2O16A 5K23C 3TE5C 2QREE 2YVZA 2NYEA 4UUUA 4DQWA 4P1OA 4IY3A 4L28A 5MMZA 2OOXE 3K2VA 4O9KA 3KPCA 3HF7A
chains in the Genus database with same CATH superfamily
3L31A 4FXSA 4L27A 4FRYA 3FNAA 4ESYB 3FHMA 3PC3A 3TDHC 3LQNA 2NYCA 3FWRA 4IY2A 3PC4A 3L2BA 1O50A 3I8NA 3OCMA 4PCUA 2ZY9A 2OOYE 4COOA 2YZIA 4L0DA 2EMQA 5K22B 2RIFA 3DDJA 3T4NC 3KPBA 1YAVA 2QRDE 2P9MA 4L3VA 3LV9A 2QLVC 2RIHA 2EF7A 1PBJA 3KXRA 2J9LA 2D4ZA 2QH1A 4GQWA 2UV7A 2QR1E 2UV6A 3OCOA 3FV6A 1XKFA 3PC2A 3KPDA 2PFIA 3ORGA 2YVXA 4IYSA 2YZQA 2JA3A 3LHHA 3OI8A 1Y5HA 2RC3A 4IY4A 4P1GA 4GQVA 3GBYA 5IIPA 4GQYA 2YVYA 4NOCA 3FWSA 5KS7A 3KH5A 3SL7A 4ESYA 4IY0A 1PVMA 3LFZA 3K6EA 5K24C 2UV5A 5LXQA 2OUXA 4HG0A 2QRCE 5K25C 2UV4A 2O16A 5K23C 3TE5C 2QREE 2YVZA 2NYEA 4UUUA 4DQWA 4P1OA 4IY3A 4L28A 5MMZA 2OOXE 3K2VA 4O9KA 3KPCA 3HF7A
chains in the Genus database with same CATH topology
3L31A 4FXSA 4L27A 4FRYA 3FNAA 4ESYB 3FHMA 3PC3A 3TDHC 3LQNA 2NYCA 3FWRA 4IY2A 3PC4A 3L2BA 1O50A 3I8NA 3OCMA 4PCUA 2ZY9A 2OOYE 4COOA 2YZIA 4L0DA 2EMQA 5K22B 2RIFA 3DDJA 3T4NC 3KPBA 1YAVA 2QRDE 2P9MA 4L3VA 3LV9A 2QLVC 2RIHA 2EF7A 1PBJA 3KXRA 2J9LA 2D4ZA 2QH1A 4GQWA 2UV7A 2QR1E 2UV6A 3OCOA 3FV6A 1XKFA 3PC2A 3KPDA 2PFIA 3ORGA 2YVXA 4IYSA 2YZQA 2JA3A 3LHHA 3OI8A 1Y5HA 2RC3A 4IY4A 4P1GA 4GQVA 3GBYA 5IIPA 4GQYA 2YVYA 4NOCA 3FWSA 5KS7A 3KH5A 3SL7A 4ESYA 4IY0A 1PVMA 3LFZA 3K6EA 5K24C 2UV5A 5LXQA 2OUXA 4HG0A 2QRCE 5K25C 2UV4A 2O16A 5K23C 3TE5C 2QREE 2YVZA 2NYEA 4UUUA 4DQWA 4P1OA 4IY3A 4L28A 5MMZA 2OOXE 3K2VA 4O9KA 3KPCA 3HF7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L31 A;  4FXS A;  4L27 A;  4FRY A;  3FNA A;  4ESY B;  3FHM A;  3PC3 A;  3TDH C;  3LQN A;  2NYC A;  3FWR A;  4IY2 A;  3PC4 A;  3L2B A;  1O50 A;  3I8N A;  3OCM A;  4PCU A;  2ZY9 A;  2OOY E;  4COO A;  2YZI A;  4L0D A;  2EMQ A;  5K22 B;  2RIF A;  3DDJ A;  3T4N C;  3KPB A;  1YAV A;  2QRD E;  2P9M A;  4L3V A;  3LV9 A;  2QLV C;  2RIH A;  2EF7 A;  1PBJ A;  3KXR A;  2D4Z A;  2QH1 A;  4GQW A;  2UV7 A;  2QR1 E;  2UV6 A;  3OCO A;  3FV6 A;  1XKF A;  3PC2 A;  3KPD A;  2PFI A;  3ORG A;  2YVX A;  4IYS A;  2YZQ A;  3LHH A;  3OI8 A;  1Y5H A;  2RC3 A;  4IY4 A;  4P1G A;  4GQV A;  3GBY A;  5IIP A;  4GQY A;  2YVY A;  4NOC A;  3FWS A;  5KS7 A;  3KH5 A;  3SL7 A;  4ESY A;  4IY0 A;  1PVM A;  3LFZ A;  3K6E A;  5K24 C;  2UV5 A;  5LXQ A;  2OUX A;  4HG0 A;  2QRC E;  5K25 C;  2UV4 A;  2O16 A;  5K23 C;  3TE5 C;  2QRE E;  2YVZ A;  2NYE A;  4UUU A;  4DQW A;  4P1O A;  4IY3 A;  4L28 A;  5MMZ A;  2OOX E;  3K2V A;  4O9K A;  3KPC A;  3HF7 A; 
#chains in the Genus database with same CATH topology
 3L31 A;  4FXS A;  4L27 A;  4FRY A;  3FNA A;  4ESY B;  3FHM A;  3PC3 A;  3TDH C;  3LQN A;  2NYC A;  3FWR A;  4IY2 A;  3PC4 A;  3L2B A;  1O50 A;  3I8N A;  3OCM A;  4PCU A;  2ZY9 A;  2OOY E;  4COO A;  2YZI A;  4L0D A;  2EMQ A;  5K22 B;  2RIF A;  3DDJ A;  3T4N C;  3KPB A;  1YAV A;  2QRD E;  2P9M A;  4L3V A;  3LV9 A;  2QLV C;  2RIH A;  2EF7 A;  1PBJ A;  3KXR A;  2J9L A;  2D4Z A;  2QH1 A;  4GQW A;  2UV7 A;  2QR1 E;  2UV6 A;  3OCO A;  3FV6 A;  1XKF A;  3PC2 A;  3KPD A;  2PFI A;  3ORG A;  2YVX A;  4IYS A;  2YZQ A;  2JA3 A;  3LHH A;  3OI8 A;  1Y5H A;  2RC3 A;  4IY4 A;  4P1G A;  4GQV A;  3GBY A;  5IIP A;  4GQY A;  2YVY A;  4NOC A;  3FWS A;  5KS7 A;  3KH5 A;  3SL7 A;  4ESY A;  4IY0 A;  1PVM A;  3LFZ A;  3K6E A;  5K24 C;  2UV5 A;  5LXQ A;  2OUX A;  4HG0 A;  2QRC E;  5K25 C;  2UV4 A;  2O16 A;  5K23 C;  3TE5 C;  2QRE E;  2YVZ A;  2NYE A;  4UUU A;  4DQW A;  4P1O A;  4IY3 A;  4L28 A;  5MMZ A;  2OOX E;  3K2V A;  4O9K A;  3KPC A;  3HF7 A; 
#chains in the Genus database with same CATH homology
 3L31 A;  4FXS A;  4L27 A;  4FRY A;  3FNA A;  4ESY B;  3FHM A;  3PC3 A;  3TDH C;  3LQN A;  2NYC A;  3FWR A;  4IY2 A;  3PC4 A;  3L2B A;  1O50 A;  3I8N A;  3OCM A;  4PCU A;  2ZY9 A;  2OOY E;  4COO A;  2YZI A;  4L0D A;  2EMQ A;  5K22 B;  2RIF A;  3DDJ A;  3T4N C;  3KPB A;  1YAV A;  2QRD E;  2P9M A;  4L3V A;  3LV9 A;  2QLV C;  2RIH A;  2EF7 A;  1PBJ A;  3KXR A;  2J9L A;  2D4Z A;  2QH1 A;  4GQW A;  2UV7 A;  2QR1 E;  2UV6 A;  3OCO A;  3FV6 A;  1XKF A;  3PC2 A;  3KPD A;  2PFI A;  3ORG A;  2YVX A;  4IYS A;  2YZQ A;  2JA3 A;  3LHH A;  3OI8 A;  1Y5H A;  2RC3 A;  4IY4 A;  4P1G A;  4GQV A;  3GBY A;  5IIP A;  4GQY A;  2YVY A;  4NOC A;  3FWS A;  5KS7 A;  3KH5 A;  3SL7 A;  4ESY A;  4IY0 A;  1PVM A;  3LFZ A;  3K6E A;  5K24 C;  2UV5 A;  5LXQ A;  2OUX A;  4HG0 A;  2QRC E;  5K25 C;  2UV4 A;  2O16 A;  5K23 C;  3TE5 C;  2QRE E;  2YVZ A;  2NYE A;  4UUU A;  4DQW A;  4P1O A;  4IY3 A;  4L28 A;  5MMZ A;  2OOX E;  3K2V A;  4O9K A;  3KPC A;  3HF7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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