4ESYB

Crystal structure of the cbs domain of cbs domain containing membrane protein from sphaerobacter thermophilus
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
163
structure length
162
Chain Sequence
RVAEQARRRAIARAIRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDLLKLLLLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal Structure of the CBS Domain of CBS Domain Containing Membrane Protein from Sphaerobacter thermophilus
rcsb
molecule tags Membrane protein
source organism Sphaerobacter thermophilus
molecule keywords CBS domain containing membrane protein
total genus 43
structure length 162
sequence length 163
ec nomenclature
pdb deposition date 2012-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 4esyB00
3SL7A 4L3VA 4DQWA 4P1GA 5MMZA 3I8NA 4IY3A 3OCOA 2YZQA 2YZIA 2QR1E 4COOA 5K23C 3K2VA 5K25C 4IYSA 1Y5HA 4UUUA 3KPBA 2P9MA 2YVYA 4IY2A 4P1OA 2OOYE 2OOXE 3DDJA 3KPDA 3T4NC 2YVXA 4FXSA 4GQYA 3PC4A 4NOCA 3FV6A 1PBJA 4ESYA 5K22B 3LQNA 4L27A 2OUXA 2YVZA 3KH5A 2UV5A 3L31A 4FRYA 3TDHC 3LHHA 2ZY9A 2RIFA 4L0DA 2O16A 2PFIA 4IY0A 4ESYB 3TE5C 2QRDE 2UV6A 2RIHA 3PC3A 3KPCA 1XKFA 4L28A 2UV7A 3L2BA 3LFZA 2QRCE 1YAVA 3FHMA 3PC2A 3LV9A 3ORGA 5LXQA 2NYEA 3HF7A 2EMQA 3KXRA 3K6EA 3FNAA 3FWRA 4IY4A 2QREE 3FWSA 4GQWA 3OI8A 4O9KA 2QH1A 5KS7A 2EF7A 2QLVC 4PCUA 4GQVA 2UV4A 1O50A 3OCMA 4HG0A 2D4ZA 5K24C 2RC3A 1PVMA 5IIPA 3GBYA 2NYCA
chains in the Genus database with same CATH superfamily
3SL7A 4L3VA 4DQWA 4P1GA 5MMZA 3I8NA 4IY3A 3OCOA 2YZQA 2YZIA 2QR1E 4COOA 5K23C 3K2VA 5K25C 4IYSA 1Y5HA 4UUUA 3KPBA 2P9MA 2YVYA 4IY2A 4P1OA 2OOYE 2OOXE 3DDJA 3KPDA 3T4NC 2YVXA 2JA3A 4FXSA 4GQYA 3PC4A 4NOCA 3FV6A 1PBJA 4ESYA 5K22B 3LQNA 4L27A 2OUXA 2YVZA 3KH5A 2UV5A 3L31A 4FRYA 3TDHC 3LHHA 2ZY9A 2J9LA 2RIFA 4L0DA 2O16A 2PFIA 4IY0A 4ESYB 3TE5C 2QRDE 2UV6A 2RIHA 3PC3A 3KPCA 1XKFA 4L28A 2UV7A 3L2BA 3LFZA 2QRCE 1YAVA 3FHMA 3PC2A 3LV9A 3ORGA 5LXQA 2NYEA 3HF7A 2EMQA 3KXRA 3K6EA 3FNAA 3FWRA 4IY4A 2QREE 3FWSA 4GQWA 3OI8A 4O9KA 2QH1A 5KS7A 2EF7A 2QLVC 4PCUA 4GQVA 2UV4A 1O50A 3OCMA 4HG0A 2D4ZA 5K24C 2RC3A 1PVMA 5IIPA 3GBYA 2NYCA
chains in the Genus database with same CATH topology
3SL7A 4L3VA 4DQWA 4P1GA 5MMZA 3I8NA 4IY3A 3OCOA 2YZQA 2YZIA 2QR1E 4COOA 5K23C 3K2VA 5K25C 4IYSA 1Y5HA 4UUUA 3KPBA 2P9MA 2YVYA 4IY2A 4P1OA 2OOYE 2OOXE 3DDJA 3KPDA 3T4NC 2YVXA 2JA3A 4FXSA 4GQYA 3PC4A 4NOCA 3FV6A 1PBJA 4ESYA 5K22B 3LQNA 4L27A 2OUXA 2YVZA 3KH5A 2UV5A 3L31A 4FRYA 3TDHC 3LHHA 2ZY9A 2J9LA 2RIFA 4L0DA 2O16A 2PFIA 4IY0A 4ESYB 3TE5C 2QRDE 2UV6A 2RIHA 3PC3A 3KPCA 1XKFA 4L28A 2UV7A 3L2BA 3LFZA 2QRCE 1YAVA 3FHMA 3PC2A 3LV9A 3ORGA 5LXQA 2NYEA 3HF7A 2EMQA 3KXRA 3K6EA 3FNAA 3FWRA 4IY4A 2QREE 3FWSA 4GQWA 3OI8A 4O9KA 2QH1A 5KS7A 2EF7A 2QLVC 4PCUA 4GQVA 2UV4A 1O50A 3OCMA 4HG0A 2D4ZA 5K24C 2RC3A 1PVMA 5IIPA 3GBYA 2NYCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SL7 A;  4L3V A;  4DQW A;  4P1G A;  5MMZ A;  3I8N A;  4IY3 A;  3OCO A;  2YZQ A;  2YZI A;  2QR1 E;  4COO A;  5K23 C;  3K2V A;  5K25 C;  4IYS A;  1Y5H A;  4UUU A;  3KPB A;  2P9M A;  2YVY A;  4IY2 A;  4P1O A;  2OOY E;  2OOX E;  3DDJ A;  3KPD A;  3T4N C;  2YVX A;  4FXS A;  4GQY A;  3PC4 A;  4NOC A;  3FV6 A;  1PBJ A;  4ESY A;  5K22 B;  3LQN A;  4L27 A;  2OUX A;  2YVZ A;  3KH5 A;  2UV5 A;  3L31 A;  4FRY A;  3TDH C;  3LHH A;  2ZY9 A;  2RIF A;  4L0D A;  2O16 A;  2PFI A;  4IY0 A;  4ESY B;  3TE5 C;  2QRD E;  2UV6 A;  2RIH A;  3PC3 A;  3KPC A;  1XKF A;  4L28 A;  2UV7 A;  3L2B A;  3LFZ A;  2QRC E;  1YAV A;  3FHM A;  3PC2 A;  3LV9 A;  3ORG A;  5LXQ A;  2NYE A;  3HF7 A;  2EMQ A;  3KXR A;  3K6E A;  3FNA A;  3FWR A;  4IY4 A;  2QRE E;  3FWS A;  4GQW A;  3OI8 A;  4O9K A;  2QH1 A;  5KS7 A;  2EF7 A;  2QLV C;  4PCU A;  4GQV A;  2UV4 A;  1O50 A;  3OCM A;  4HG0 A;  2D4Z A;  5K24 C;  2RC3 A;  1PVM A;  5IIP A;  3GBY A;  2NYC A; 
#chains in the Genus database with same CATH topology
 3SL7 A;  4L3V A;  4DQW A;  4P1G A;  5MMZ A;  3I8N A;  4IY3 A;  3OCO A;  2YZQ A;  2YZI A;  2QR1 E;  4COO A;  5K23 C;  3K2V A;  5K25 C;  4IYS A;  1Y5H A;  4UUU A;  3KPB A;  2P9M A;  2YVY A;  4IY2 A;  4P1O A;  2OOY E;  2OOX E;  3DDJ A;  3KPD A;  3T4N C;  2YVX A;  2JA3 A;  4FXS A;  4GQY A;  3PC4 A;  4NOC A;  3FV6 A;  1PBJ A;  4ESY A;  5K22 B;  3LQN A;  4L27 A;  2OUX A;  2YVZ A;  3KH5 A;  2UV5 A;  3L31 A;  4FRY A;  3TDH C;  3LHH A;  2ZY9 A;  2J9L A;  2RIF A;  4L0D A;  2O16 A;  2PFI A;  4IY0 A;  4ESY B;  3TE5 C;  2QRD E;  2UV6 A;  2RIH A;  3PC3 A;  3KPC A;  1XKF A;  4L28 A;  2UV7 A;  3L2B A;  3LFZ A;  2QRC E;  1YAV A;  3FHM A;  3PC2 A;  3LV9 A;  3ORG A;  5LXQ A;  2NYE A;  3HF7 A;  2EMQ A;  3KXR A;  3K6E A;  3FNA A;  3FWR A;  4IY4 A;  2QRE E;  3FWS A;  4GQW A;  3OI8 A;  4O9K A;  2QH1 A;  5KS7 A;  2EF7 A;  2QLV C;  4PCU A;  4GQV A;  2UV4 A;  1O50 A;  3OCM A;  4HG0 A;  2D4Z A;  5K24 C;  2RC3 A;  1PVM A;  5IIP A;  3GBY A;  2NYC A; 
#chains in the Genus database with same CATH homology
 3SL7 A;  4L3V A;  4DQW A;  4P1G A;  5MMZ A;  3I8N A;  4IY3 A;  3OCO A;  2YZQ A;  2YZI A;  2QR1 E;  4COO A;  5K23 C;  3K2V A;  5K25 C;  4IYS A;  1Y5H A;  4UUU A;  3KPB A;  2P9M A;  2YVY A;  4IY2 A;  4P1O A;  2OOY E;  2OOX E;  3DDJ A;  3KPD A;  3T4N C;  2YVX A;  2JA3 A;  4FXS A;  4GQY A;  3PC4 A;  4NOC A;  3FV6 A;  1PBJ A;  4ESY A;  5K22 B;  3LQN A;  4L27 A;  2OUX A;  2YVZ A;  3KH5 A;  2UV5 A;  3L31 A;  4FRY A;  3TDH C;  3LHH A;  2ZY9 A;  2J9L A;  2RIF A;  4L0D A;  2O16 A;  2PFI A;  4IY0 A;  4ESY B;  3TE5 C;  2QRD E;  2UV6 A;  2RIH A;  3PC3 A;  3KPC A;  1XKF A;  4L28 A;  2UV7 A;  3L2B A;  3LFZ A;  2QRC E;  1YAV A;  3FHM A;  3PC2 A;  3LV9 A;  3ORG A;  5LXQ A;  2NYE A;  3HF7 A;  2EMQ A;  3KXR A;  3K6E A;  3FNA A;  3FWR A;  4IY4 A;  2QRE E;  3FWS A;  4GQW A;  3OI8 A;  4O9K A;  2QH1 A;  5KS7 A;  2EF7 A;  2QLV C;  4PCU A;  4GQV A;  2UV4 A;  1O50 A;  3OCM A;  4HG0 A;  2D4Z A;  5K24 C;  2RC3 A;  1PVM A;  5IIP A;  3GBY A;  2NYC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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