4FRY | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	136
structure length	136
Chain Sequence	TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIADQQFTIS

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein
source organism	Burkholderia ambifaria
publication title	Combining functional and structural genomics to sample the essential Burkholderia structome. pubmed doi rcsb
molecule keywords	Putative signal-transduction protein with CBS domains
total genus	32
structure length	136
sequence length	136
chains with identical sequence	B
ec nomenclature
pdb deposition date	2012-06-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00571	CBS	CBS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.580.10	Alpha Beta	Roll	CBS-domain	CBS-domain	4fryA00

4NOCA 4L3VA 4L27A 3L31A 4IY4A 3FHMA 3T4NC 2UV6A 4UUUA 3K6EA 3OI8A 5K22B 4IY3A 4HG0A 2OOXE 2EF7A 3KPDA 2D4ZA 4ESYA 4P1OA 3SL7A 5LXQA 4PCUA 5MMZA 2NYCA 3ORGA 3L2BA 3LFZA 2ZY9A 4IY2A 3FV6A 4P1GA 2RIFA 4FRYA 3FWRA 4COOA 3OCMA 3FWSA 3KH5A 5IIPA 3KPCA 3PC2A 2PFIA 2QR1E 4FXSA 4GQYA 3TE5C 2EMQA 2UV4A 5K24C 2RC3A 2UV7A 2QLVC 4IYSA 2QRCE 5K25C 4L0DA 3OCOA 2RIHA 2YZQA 3KXRA 3LV9A 4L28A 1YAVA 5K23C 3KPBA 3K2VA 2QRDE 3LHHA 3PC3A 2QREE 5KS7A 2YVZA 2YVXA 4O9KA 2UV5A 4DQWA 1PVMA 2QH1A 3HF7A 4ESYB 1PBJA 2P9MA 4IY0A 4GQWA 4GQVA 3FNAA 1Y5HA 3PC4A 2O16A 3TDHC 2OOYE 2YVYA 2NYEA 3GBYA 1XKFA 2OUXA 3I8NA 3LQNA 3DDJA 2YZIA 1O50A
chains in the Genus database with same CATH superfamily

4NOCA 4L3VA 4L27A 3L31A 4IY4A 3FHMA 3T4NC 2UV6A 4UUUA 3K6EA 3OI8A 5K22B 2JA3A 4IY3A 4HG0A 2OOXE 2EF7A 3KPDA 2D4ZA 4ESYA 4P1OA 3SL7A 5LXQA 4PCUA 5MMZA 2NYCA 3ORGA 3L2BA 3LFZA 2ZY9A 4IY2A 3FV6A 4P1GA 2RIFA 4FRYA 3FWRA 2J9LA 4COOA 3OCMA 3FWSA 3KH5A 5IIPA 3KPCA 3PC2A 2PFIA 2QR1E 4FXSA 4GQYA 3TE5C 2EMQA 2UV4A 5K24C 2RC3A 2UV7A 2QLVC 4IYSA 2QRCE 5K25C 4L0DA 3OCOA 2RIHA 2YZQA 3KXRA 3LV9A 4L28A 1YAVA 5K23C 3KPBA 3K2VA 2QRDE 3LHHA 3PC3A 2QREE 5KS7A 2YVZA 2YVXA 4O9KA 2UV5A 4DQWA 1PVMA 2QH1A 3HF7A 4ESYB 1PBJA 2P9MA 4IY0A 4GQWA 4GQVA 3FNAA 1Y5HA 3PC4A 2O16A 3TDHC 2OOYE 2YVYA 2NYEA 3GBYA 1XKFA 2OUXA 3I8NA 3LQNA 3DDJA 2YZIA 1O50A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4NOC A;  4L3V A;  4L27 A;  3L31 A;  4IY4 A;  3FHM A;  3T4N C;  2UV6 A;  4UUU A;  3K6E A;  3OI8 A;  5K22 B;  4IY3 A;  4HG0 A;  2OOX E;  2EF7 A;  3KPD A;  2D4Z A;  4ESY A;  4P1O A;  3SL7 A;  5LXQ A;  4PCU A;  5MMZ A;  2NYC A;  3ORG A;  3L2B A;  3LFZ A;  2ZY9 A;  4IY2 A;  3FV6 A;  4P1G A;  2RIF A;  4FRY A;  3FWR A;  4COO A;  3OCM A;  3FWS A;  3KH5 A;  5IIP A;  3KPC A;  3PC2 A;  2PFI A;  2QR1 E;  4FXS A;  4GQY A;  3TE5 C;  2EMQ A;  2UV4 A;  5K24 C;  2RC3 A;  2UV7 A;  2QLV C;  4IYS A;  2QRC E;  5K25 C;  4L0D A;  3OCO A;  2RIH A;  2YZQ A;  3KXR A;  3LV9 A;  4L28 A;  1YAV A;  5K23 C;  3KPB A;  3K2V A;  2QRD E;  3LHH A;  3PC3 A;  2QRE E;  5KS7 A;  2YVZ A;  2YVX A;  4O9K A;  2UV5 A;  4DQW A;  1PVM A;  2QH1 A;  3HF7 A;  4ESY B;  1PBJ A;  2P9M A;  4IY0 A;  4GQW A;  4GQV A;  3FNA A;  1Y5H A;  3PC4 A;  2O16 A;  3TDH C;  2OOY E;  2YVY A;  2NYE A;  3GBY A;  1XKF A;  2OUX A;  3I8N A;  3LQN A;  3DDJ A;  2YZI A;  1O50 A; 
#chains in the Genus database with same CATH topology
 4NOC A;  4L3V A;  4L27 A;  3L31 A;  4IY4 A;  3FHM A;  3T4N C;  2UV6 A;  4UUU A;  3K6E A;  3OI8 A;  5K22 B;  2JA3 A;  4IY3 A;  4HG0 A;  2OOX E;  2EF7 A;  3KPD A;  2D4Z A;  4ESY A;  4P1O A;  3SL7 A;  5LXQ A;  4PCU A;  5MMZ A;  2NYC A;  3ORG A;  3L2B A;  3LFZ A;  2ZY9 A;  4IY2 A;  3FV6 A;  4P1G A;  2RIF A;  4FRY A;  3FWR A;  2J9L A;  4COO A;  3OCM A;  3FWS A;  3KH5 A;  5IIP A;  3KPC A;  3PC2 A;  2PFI A;  2QR1 E;  4FXS A;  4GQY A;  3TE5 C;  2EMQ A;  2UV4 A;  5K24 C;  2RC3 A;  2UV7 A;  2QLV C;  4IYS A;  2QRC E;  5K25 C;  4L0D A;  3OCO A;  2RIH A;  2YZQ A;  3KXR A;  3LV9 A;  4L28 A;  1YAV A;  5K23 C;  3KPB A;  3K2V A;  2QRD E;  3LHH A;  3PC3 A;  2QRE E;  5KS7 A;  2YVZ A;  2YVX A;  4O9K A;  2UV5 A;  4DQW A;  1PVM A;  2QH1 A;  3HF7 A;  4ESY B;  1PBJ A;  2P9M A;  4IY0 A;  4GQW A;  4GQV A;  3FNA A;  1Y5H A;  3PC4 A;  2O16 A;  3TDH C;  2OOY E;  2YVY A;  2NYE A;  3GBY A;  1XKF A;  2OUX A;  3I8N A;  3LQN A;  3DDJ A;  2YZI A;  1O50 A; 
#chains in the Genus database with same CATH homology
 4NOC A;  4L3V A;  4L27 A;  3L31 A;  4IY4 A;  3FHM A;  3T4N C;  2UV6 A;  4UUU A;  3K6E A;  3OI8 A;  5K22 B;  2JA3 A;  4IY3 A;  4HG0 A;  2OOX E;  2EF7 A;  3KPD A;  2D4Z A;  4ESY A;  4P1O A;  3SL7 A;  5LXQ A;  4PCU A;  5MMZ A;  2NYC A;  3ORG A;  3L2B A;  3LFZ A;  2ZY9 A;  4IY2 A;  3FV6 A;  4P1G A;  2RIF A;  4FRY A;  3FWR A;  2J9L A;  4COO A;  3OCM A;  3FWS A;  3KH5 A;  5IIP A;  3KPC A;  3PC2 A;  2PFI A;  2QR1 E;  4FXS A;  4GQY A;  3TE5 C;  2EMQ A;  2UV4 A;  5K24 C;  2RC3 A;  2UV7 A;  2QLV C;  4IYS A;  2QRC E;  5K25 C;  4L0D A;  3OCO A;  2RIH A;  2YZQ A;  3KXR A;  3LV9 A;  4L28 A;  1YAV A;  5K23 C;  3KPB A;  3K2V A;  2QRD E;  3LHH A;  3PC3 A;  2QRE E;  5KS7 A;  2YVZ A;  2YVX A;  4O9K A;  2UV5 A;  4DQW A;  1PVM A;  2QH1 A;  3HF7 A;  4ESY B;  1PBJ A;  2P9M A;  4IY0 A;  4GQW A;  4GQV A;  3FNA A;  1Y5H A;  3PC4 A;  2O16 A;  3TDH C;  2OOY E;  2YVY A;  2NYE A;  3GBY A;  1XKF A;  2OUX A;  3I8N A;  3LQN A;  3DDJ A;  2YZI A;  1O50 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4FRYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations