4MQD | Genus

Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	133
structure length	133
Chain Sequence	AMIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPFHVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 133 atoms

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133 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase inhibitor
source organism	Bacillus subtilis subsp. subtilis
publication title	Crystal structure of ComJ, inhibitor of the DNA degrading activity of NucA, from Bacillus subtilis rcsb
molecule keywords	DNA-entry nuclease inhibitor
total genus	25
structure length	133
sequence length	133
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2013-09-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF11033	ComJ	Competence protein J (ComJ)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.34.30	Mainly Beta	Sandwich	Substrate Binding Domain Of DNAk; Chain A, domain 1	Substrate Binding Domain Of DNAk; Chain A, domain 1	4mqdA00

4MQDA
chains in the Genus database with same CATH superfamily

3C7NA 4R5JA 4I43A 1Q5LA 2BPRA 4EZNA 4HY9A 1U00A 3ZEFA 4EZWA 4ILHB 4JWEA 4JNEA 4FL9A 3H0XA 4EZOA 3N8EA 5TKYA 4JWCA 1DKXA 3DPPA 4JWIA 4EZXA 4EZQA 4PO2A 2KHOA 4WV5A 5E84A 4F01A 3SBTB 4R5KA 4JNFA 4EZUA 3DPOA 3DPQA 3D2FA 3DOBA 4EZTA 2OP6A 4B9QA 4HYBA 4MQDA 4EZYA 4F00A 4WV7A 4EZVA 3C7NB 4R5IA 3SBSA 1BPRA 1DKYA 4EZRA 1DG4A 1DKZA 2QXLA 7HSCA 4EZPA 4ILIA 4E81A 4JN4A 4EZSA 4JWDA 1YUWA 3DQGA 4ILGA 2V7YA 4EZZA 3D2EA 4R5GA 3QNJA 4R5LA 1CKRA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4MQD A; 
#chains in the Genus database with same CATH topology
 3C7N A;  4R5J A;  4I43 A;  1Q5L A;  2BPR A;  4EZN A;  4HY9 A;  1U00 A;  3ZEF A;  4EZW A;  4ILH B;  4JWE A;  4JNE A;  4FL9 A;  3H0X A;  4EZO A;  3N8E A;  5TKY A;  4JWC A;  1DKX A;  3DPP A;  4JWI A;  4EZX A;  4EZQ A;  4PO2 A;  2KHO A;  4WV5 A;  5E84 A;  4F01 A;  3SBT B;  4R5K A;  4JNF A;  4EZU A;  3DPO A;  3DPQ A;  3D2F A;  3DOB A;  4EZT A;  2OP6 A;  4B9Q A;  4HYB A;  4MQD A;  4EZY A;  4F00 A;  4WV7 A;  4EZV A;  3C7N B;  4R5I A;  3SBS A;  1BPR A;  1DKY A;  4EZR A;  1DG4 A;  1DKZ A;  2QXL A;  7HSC A;  4EZP A;  4ILI A;  4E81 A;  4JN4 A;  4EZS A;  4JWD A;  1YUW A;  3DQG A;  4ILG A;  2V7Y A;  4EZZ A;  3D2E A;  4R5G A;  3QNJ A;  4R5L A;  1CKR A; 
#chains in the Genus database with same CATH homology
 3C7N A;  4R5J A;  4I43 A;  1Q5L A;  2BPR A;  4EZN A;  4HY9 A;  1U00 A;  3ZEF A;  4EZW A;  4ILH B;  4JWE A;  4JNE A;  4FL9 A;  3H0X A;  4EZO A;  3N8E A;  5TKY A;  4JWC A;  1DKX A;  3DPP A;  4JWI A;  4EZX A;  4EZQ A;  4PO2 A;  2KHO A;  4WV5 A;  5E84 A;  4F01 A;  3SBT B;  4R5K A;  4JNF A;  4EZU A;  3DPO A;  3DPQ A;  3D2F A;  3DOB A;  4EZT A;  2OP6 A;  4B9Q A;  4HYB A;  4MQD A;  4EZY A;  4F00 A;  4WV7 A;  4EZV A;  3C7N B;  4R5I A;  3SBS A;  1BPR A;  1DKY A;  4EZR A;  1DG4 A;  1DKZ A;  2QXL A;  7HSC A;  4EZP A;  4ILI A;  4E81 A;  4JN4 A;  4EZS A;  4JWD A;  1YUW A;  3DQG A;  4ILG A;  2V7Y A;  4EZZ A;  3D2E A;  4R5G A;  3QNJ A;  4R5L A;  1CKR A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4MQDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations