4NOC | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	148
structure length	146
Chain Sequence	MHGEQMAEQFPVVGLDSDAREAVELLASRRLPGLIVVDEKGSPHSVLPASQVVRFLVPSYVQDSLARVIDESLADQVADKLAGVTVRKLLPSQPAELPVVKHDDTVLEVAAIMARLRCPLVAVVKNKEIIGAITASRLLELVVSPH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein
source organism	Kribbella flavida
publication title	The crystal structure of a CBS Domain-containing Protein of Unknown Function from Kribbella flavida DSM 17836. rcsb
molecule keywords	Putative signal transduction protein with CBS domains
total genus	35
structure length	146
sequence length	148
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2013-11-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00571	CBS	CBS domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.580.10	Alpha Beta	Roll	CBS-domain	CBS-domain	4nocA00

2PFIA 4IY0A 3PC3A 3ORGA 4IY3A 2QLVC 3LQNA 5MMZA 2RIFA 5K22B 5K23C 1PVMA 2ZY9A 2YZQA 2OOXE 4DQWA 3PC2A 2YVYA 4P1OA 4ESYA 3LV9A 2D4ZA 3DDJA 4IY4A 3L31A 4GQVA 4P1GA 3KPBA 3FV6A 4FXSA 4L3VA 4GQWA 2P9MA 4IYSA 4COOA 3KPDA 2QR1E 3FWSA 3KH5A 2EF7A 2UV5A 3PC4A 3KPCA 4NOCA 3T4NC 4HG0A 3FWRA 3K6EA 3TE5C 5K25C 2QRDE 3LFZA 4IY2A 2QREE 2OOYE 3I8NA 3K2VA 2EMQA 2RC3A 2RIHA 1O50A 4GQYA 5K24C 5KS7A 4ESYB 4O9KA 3OI8A 3HF7A 3OCMA 2UV4A 5LXQA 3KXRA 1YAVA 2OUXA 3L2BA 2QRCE 2YZIA 3OCOA 2UV6A 4L28A 2QH1A 4UUUA 1Y5HA 5IIPA 2YVZA 2O16A 1PBJA 2YVXA 4FRYA 3TDHC 2NYEA 3LHHA 3GBYA 3SL7A 3FHMA 4PCUA 1XKFA 2UV7A 3FNAA 4L0DA 4L27A 2NYCA
chains in the Genus database with same CATH superfamily

2PFIA 4IY0A 2J9LA 3PC3A 3ORGA 4IY3A 2QLVC 3LQNA 5MMZA 2RIFA 5K22B 5K23C 1PVMA 2ZY9A 2YZQA 2OOXE 4DQWA 3PC2A 2YVYA 4P1OA 4ESYA 3LV9A 2D4ZA 3DDJA 4IY4A 3L31A 4GQVA 4P1GA 3KPBA 3FV6A 4FXSA 4L3VA 4GQWA 2P9MA 4IYSA 4COOA 3KPDA 2QR1E 3FWSA 3KH5A 2EF7A 2UV5A 3PC4A 3KPCA 4NOCA 3T4NC 4HG0A 3FWRA 3K6EA 3TE5C 5K25C 2QRDE 2JA3A 3LFZA 4IY2A 2QREE 2OOYE 3I8NA 3K2VA 2EMQA 2RC3A 2RIHA 1O50A 4GQYA 5K24C 5KS7A 4ESYB 4O9KA 3OI8A 3HF7A 3OCMA 2UV4A 5LXQA 3KXRA 1YAVA 2OUXA 3L2BA 2QRCE 2YZIA 3OCOA 2UV6A 4L28A 2QH1A 4UUUA 1Y5HA 5IIPA 2YVZA 2O16A 1PBJA 2YVXA 4FRYA 3TDHC 2NYEA 3LHHA 3GBYA 3SL7A 3FHMA 4PCUA 1XKFA 2UV7A 3FNAA 4L0DA 4L27A 2NYCA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2PFI A;  4IY0 A;  3PC3 A;  3ORG A;  4IY3 A;  2QLV C;  3LQN A;  5MMZ A;  2RIF A;  5K22 B;  5K23 C;  1PVM A;  2ZY9 A;  2YZQ A;  2OOX E;  4DQW A;  3PC2 A;  2YVY A;  4P1O A;  4ESY A;  3LV9 A;  2D4Z A;  3DDJ A;  4IY4 A;  3L31 A;  4GQV A;  4P1G A;  3KPB A;  3FV6 A;  4FXS A;  4L3V A;  4GQW A;  2P9M A;  4IYS A;  4COO A;  3KPD A;  2QR1 E;  3FWS A;  3KH5 A;  2EF7 A;  2UV5 A;  3PC4 A;  3KPC A;  4NOC A;  3T4N C;  4HG0 A;  3FWR A;  3K6E A;  3TE5 C;  5K25 C;  2QRD E;  3LFZ A;  4IY2 A;  2QRE E;  2OOY E;  3I8N A;  3K2V A;  2EMQ A;  2RC3 A;  2RIH A;  1O50 A;  4GQY A;  5K24 C;  5KS7 A;  4ESY B;  4O9K A;  3OI8 A;  3HF7 A;  3OCM A;  2UV4 A;  5LXQ A;  3KXR A;  1YAV A;  2OUX A;  3L2B A;  2QRC E;  2YZI A;  3OCO A;  2UV6 A;  4L28 A;  2QH1 A;  4UUU A;  1Y5H A;  5IIP A;  2YVZ A;  2O16 A;  1PBJ A;  2YVX A;  4FRY A;  3TDH C;  2NYE A;  3LHH A;  3GBY A;  3SL7 A;  3FHM A;  4PCU A;  1XKF A;  2UV7 A;  3FNA A;  4L0D A;  4L27 A;  2NYC A; 
#chains in the Genus database with same CATH topology
 2PFI A;  4IY0 A;  2J9L A;  3PC3 A;  3ORG A;  4IY3 A;  2QLV C;  3LQN A;  5MMZ A;  2RIF A;  5K22 B;  5K23 C;  1PVM A;  2ZY9 A;  2YZQ A;  2OOX E;  4DQW A;  3PC2 A;  2YVY A;  4P1O A;  4ESY A;  3LV9 A;  2D4Z A;  3DDJ A;  4IY4 A;  3L31 A;  4GQV A;  4P1G A;  3KPB A;  3FV6 A;  4FXS A;  4L3V A;  4GQW A;  2P9M A;  4IYS A;  4COO A;  3KPD A;  2QR1 E;  3FWS A;  3KH5 A;  2EF7 A;  2UV5 A;  3PC4 A;  3KPC A;  4NOC A;  3T4N C;  4HG0 A;  3FWR A;  3K6E A;  3TE5 C;  5K25 C;  2QRD E;  2JA3 A;  3LFZ A;  4IY2 A;  2QRE E;  2OOY E;  3I8N A;  3K2V A;  2EMQ A;  2RC3 A;  2RIH A;  1O50 A;  4GQY A;  5K24 C;  5KS7 A;  4ESY B;  4O9K A;  3OI8 A;  3HF7 A;  3OCM A;  2UV4 A;  5LXQ A;  3KXR A;  1YAV A;  2OUX A;  3L2B A;  2QRC E;  2YZI A;  3OCO A;  2UV6 A;  4L28 A;  2QH1 A;  4UUU A;  1Y5H A;  5IIP A;  2YVZ A;  2O16 A;  1PBJ A;  2YVX A;  4FRY A;  3TDH C;  2NYE A;  3LHH A;  3GBY A;  3SL7 A;  3FHM A;  4PCU A;  1XKF A;  2UV7 A;  3FNA A;  4L0D A;  4L27 A;  2NYC A; 
#chains in the Genus database with same CATH homology
 2PFI A;  4IY0 A;  2J9L A;  3PC3 A;  3ORG A;  4IY3 A;  2QLV C;  3LQN A;  5MMZ A;  2RIF A;  5K22 B;  5K23 C;  1PVM A;  2ZY9 A;  2YZQ A;  2OOX E;  4DQW A;  3PC2 A;  2YVY A;  4P1O A;  4ESY A;  3LV9 A;  2D4Z A;  3DDJ A;  4IY4 A;  3L31 A;  4GQV A;  4P1G A;  3KPB A;  3FV6 A;  4FXS A;  4L3V A;  4GQW A;  2P9M A;  4IYS A;  4COO A;  3KPD A;  2QR1 E;  3FWS A;  3KH5 A;  2EF7 A;  2UV5 A;  3PC4 A;  3KPC A;  4NOC A;  3T4N C;  4HG0 A;  3FWR A;  3K6E A;  3TE5 C;  5K25 C;  2QRD E;  2JA3 A;  3LFZ A;  4IY2 A;  2QRE E;  2OOY E;  3I8N A;  3K2V A;  2EMQ A;  2RC3 A;  2RIH A;  1O50 A;  4GQY A;  5K24 C;  5KS7 A;  4ESY B;  4O9K A;  3OI8 A;  3HF7 A;  3OCM A;  2UV4 A;  5LXQ A;  3KXR A;  1YAV A;  2OUX A;  3L2B A;  2QRC E;  2YZI A;  3OCO A;  2UV6 A;  4L28 A;  2QH1 A;  4UUU A;  1Y5H A;  5IIP A;  2YVZ A;  2O16 A;  1PBJ A;  2YVX A;  4FRY A;  3TDH C;  2NYE A;  3LHH A;  3GBY A;  3SL7 A;  3FHM A;  4PCU A;  1XKF A;  2UV7 A;  3FNA A;  4L0D A;  4L27 A;  2NYC A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4NOCA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations