The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
32
|
sequence length |
123
|
structure length |
123
|
Chain Sequence |
DVTQVAQIMNTNPVSITADKSLQAAITVMKEKRVDTLLVVDEGNVLKGFIDVEQIDLNRRTATSVMDIIEKNVFYVYEDTLLRDTVQRILKRGYKYIPVVDKDKRLVGIVTRASLVDIVYDSI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Cyclic di-AMP targets the cystathionine beta-synthase domain of the osmolyte transporter OpuC.
pubmed doi rcsb |
| molecule keywords |
Carnitine transport ATP-binding protein OpuCA
|
| molecule tags |
Hydrolase/hydrolase inhibitor
|
| source organism |
Listeria monocytogenes
|
| total genus |
32
|
| structure length |
123
|
| sequence length |
123
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
7.6.2.9: ABC-type quaternary amine transporter. |
| pdb deposition date | 2016-07-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00571 | CBS | CBS domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | CBS-domain | CBS-domain |
#chains in the Genus database with same CATH superfamily 2NYC A; 3K2V A; 3FWR A; 3KH5 A; 3PC3 A; 2QRC E; 4ESY B; 3LV9 A; 3K6E A; 2NYE A; 2UV5 A; 3TE5 C; 2YVZ A; 3OCM A; 2YZI A; 2YVX A; 2UV4 A; 1PBJ A; 4ESY A; 2EMQ A; 3OI8 A; 5K23 C; 5MMZ A; 4DQW A; 4IY0 A; 5K22 B; 2UV7 A; 4GQW A; 3KPD A; 2QR1 E; 4IY3 A; 5LXQ A; 3I8N A; 3FWS A; 3TDH C; 2UV6 A; 2OOX E; 3HF7 A; 4P1O A; 1XKF A; 5KS7 A; 3KPB A; 4O9K A; 2QRE E; 4IY4 A; 2P9M A; 3L2B A; 2QLV C; 3LFZ A; 3FV6 A; 1YAV A; 3PC4 A; 2YZQ A; 2ZY9 A; 2D4Z A; 4COO A; 2RIH A; 2YVY A; 3SL7 A; 3LHH A; 4PCU A; 2QRD E; 3KPC A; 5K24 C; 5K25 C; 4L3V A; 3OCO A; 4L27 A; 4L0D A; 4UUU A; 2O16 A; 3LQN A; 3GBY A; 1PVM A; 4IYS A; 3KXR A; 2QH1 A; 5IIP A; 4FXS A; 3L31 A; 3FNA A; 3PC2 A; 2PFI A; 4FRY A; 3ORG A; 2OOY E; 4GQV A; 2OUX A; 3DDJ A; 2RIF A; 3T4N C; 4P1G A; 4IY2 A; 1O50 A; 4NOC A; 2EF7 A; 3FHM A; 1Y5H A; 4HG0 A; 2RC3 A; 4GQY A; 4L28 A; #chains in the Genus database with same CATH topology 2NYC A; 3K2V A; 3FWR A; 3KH5 A; 3PC3 A; 2QRC E; 4ESY B; 3LV9 A; 3K6E A; 2NYE A; 2UV5 A; 3TE5 C; 2YVZ A; 3OCM A; 2YZI A; 2YVX A; 2UV4 A; 1PBJ A; 4ESY A; 2EMQ A; 3OI8 A; 5K23 C; 5MMZ A; 4DQW A; 4IY0 A; 5K22 B; 2UV7 A; 4GQW A; 3KPD A; 2QR1 E; 4IY3 A; 5LXQ A; 3I8N A; 3FWS A; 3TDH C; 2UV6 A; 2OOX E; 3HF7 A; 4P1O A; 1XKF A; 5KS7 A; 3KPB A; 4O9K A; 2QRE E; 4IY4 A; 2P9M A; 3L2B A; 2QLV C; 3LFZ A; 3FV6 A; 1YAV A; 3PC4 A; 2YZQ A; 2ZY9 A; 2D4Z A; 4COO A; 2RIH A; 2YVY A; 3SL7 A; 3LHH A; 4PCU A; 2QRD E; 3KPC A; 5K24 C; 5K25 C; 4L3V A; 3OCO A; 4L27 A; 4L0D A; 4UUU A; 2O16 A; 3LQN A; 3GBY A; 1PVM A; 4IYS A; 3KXR A; 2QH1 A; 5IIP A; 4FXS A; 3L31 A; 3FNA A; 3PC2 A; 2PFI A; 2J9L A; 4FRY A; 3ORG A; 2OOY E; 4GQV A; 2OUX A; 3DDJ A; 2JA3 A; 2RIF A; 3T4N C; 4P1G A; 4IY2 A; 1O50 A; 4NOC A; 2EF7 A; 3FHM A; 1Y5H A; 4HG0 A; 2RC3 A; 4GQY A; 4L28 A; #chains in the Genus database with same CATH homology 2NYC A; 3K2V A; 3FWR A; 3KH5 A; 3PC3 A; 2QRC E; 4ESY B; 3LV9 A; 3K6E A; 2NYE A; 2UV5 A; 3TE5 C; 2YVZ A; 3OCM A; 2YZI A; 2YVX A; 2UV4 A; 1PBJ A; 4ESY A; 2EMQ A; 3OI8 A; 5K23 C; 5MMZ A; 4DQW A; 4IY0 A; 5K22 B; 2UV7 A; 4GQW A; 3KPD A; 2QR1 E; 4IY3 A; 5LXQ A; 3I8N A; 3FWS A; 3TDH C; 2UV6 A; 2OOX E; 3HF7 A; 4P1O A; 1XKF A; 5KS7 A; 3KPB A; 4O9K A; 2QRE E; 4IY4 A; 2P9M A; 3L2B A; 2QLV C; 3LFZ A; 3FV6 A; 1YAV A; 3PC4 A; 2YZQ A; 2ZY9 A; 2D4Z A; 4COO A; 2RIH A; 2YVY A; 3SL7 A; 3LHH A; 4PCU A; 2QRD E; 3KPC A; 5K24 C; 5K25 C; 4L3V A; 3OCO A; 4L27 A; 4L0D A; 4UUU A; 2O16 A; 3LQN A; 3GBY A; 1PVM A; 4IYS A; 3KXR A; 2QH1 A; 5IIP A; 4FXS A; 3L31 A; 3FNA A; 3PC2 A; 2PFI A; 2J9L A; 4FRY A; 3ORG A; 2OOY E; 4GQV A; 2OUX A; 3DDJ A; 2JA3 A; 2RIF A; 3T4N C; 4P1G A; 4IY2 A; 1O50 A; 4NOC A; 2EF7 A; 3FHM A; 1Y5H A; 4HG0 A; 2RC3 A; 4GQY A; 4L28 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
