2JA3A

Cytoplasmic domain of the human chloride transporter clc-5 in complex with adp
Total Genus 38
204060801001201400510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
174
structure length
167
Chain Sequence
HKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQMANFNEFLEV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transport protein
source organism Homo sapiens
publication title Nucleotide Recognition by the Cytoplasmic Domain of the Human Chloride Transporter Clc-5
pubmed doi rcsb
molecule keywords CHLORIDE CHANNEL PROTEIN 5
total genus 38
structure length 167
sequence length 174
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-11-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.20 Alpha Beta Roll CBS-domain CBS-domain 2ja3A02
3.90.1280.20 Alpha Beta Alpha-Beta Complex CBS domain Like CBS domain Like 2ja3A01
2J9LA 3GHDA 2JA3A 3OI8A 3LFRA 1VR9A 3NQRA 3JTFA
chains in the Genus database with same CATH superfamily
3FV6A 3GHDA 4PCUA 3K2VA 5MMZA 2NYCA 3LFZA 4L0DA 2JA3A 5K24C 2OUXA 3LFRA 2UV5A 1XJHA 5LXQA 2YVZA 4ESYB 3HF7A 4FRYA 2UV6A 4FXSA 3KPDA 2YZIA 4DQWA 3OCOA 1Y5HA 1VR9A 3NQRA 3I8NA 2RIHA 3LV9A 2ZY9A 4IY0A 4P1OA 2YVYA 3KPCA 3SL7A 4GQYA 2D4ZA 2QLVC 4L3VA 1YAVA 3PC2A 2QH1A 4ESYA 3FWSA 2O16A 2P9MA 1PVMA 3JTFA 4GQWA 3FWRA 3FNAA 3LHHA 4UUUA 5K23C 3ORGA 2OOYE 2RC3A 2NYEA 3L2BA 4NOCA 2OOXE 3KH5A 2PFIA 2QRDE 5K25C 2EF7A 2YZQA 5IIPA 4L28A 3TDHC 1VZYA 3PC3A 2RIFA 4HG0A 3TE5C 3KXRA 1O50A 2EMQA 4L27A 3KPBA 5KS7A 3T4NC 1PBJA 3FHMA 3OI8A 3OCMA 5K22B 3LQNA 3L31A 1XKFA 2YVXA 4IY2A 3PC4A 4IY4A 2UV7A 1VQ0A 2UV4A 2J9LA 2QRCE 4IYSA 4O9KA 4COOA 2QR1E 3GBYA 4P1GA 2QREE 4GQVA 3K6EA 3DDJA 4IY3A
chains in the Genus database with same CATH topology
3FV6A 3GHDA 4PCUA 3K2VA 5MMZA 2NYCA 3LFZA 4L0DA 2JA3A 5K24C 2OUXA 3LFRA 2UV5A 5LXQA 2YVZA 4ESYB 3HF7A 4FRYA 2UV6A 4FXSA 3KPDA 2YZIA 4DQWA 3OCOA 1Y5HA 1VR9A 3NQRA 3I8NA 2RIHA 3LV9A 2ZY9A 4IY0A 4P1OA 2YVYA 3KPCA 3SL7A 4GQYA 2D4ZA 2QLVC 4L3VA 1YAVA 3PC2A 2QH1A 4ESYA 3FWSA 2O16A 2P9MA 1PVMA 3JTFA 4GQWA 3FWRA 3FNAA 3LHHA 4UUUA 5K23C 3ORGA 2OOYE 2RC3A 2NYEA 3L2BA 4NOCA 2OOXE 3KH5A 2PFIA 2QRDE 5K25C 2EF7A 2YZQA 5IIPA 4L28A 3TDHC 3PC3A 2RIFA 4HG0A 3TE5C 3KXRA 1O50A 2EMQA 4L27A 3KPBA 5KS7A 3T4NC 1PBJA 3FHMA 3OI8A 3OCMA 5K22B 3LQNA 3L31A 1XKFA 2YVXA 4IY2A 3PC4A 4IY4A 2UV7A 2UV4A 2J9LA 2QRCE 4IYSA 4O9KA 4COOA 2QR1E 3GBYA 4P1GA 2QREE 4GQVA 3K6EA 3DDJA 4IY3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J9L A;  3GHD A;  2JA3 A;  3OI8 A;  3LFR A;  1VR9 A;  3NQR A;  3JTF A; 
#chains in the Genus database with same CATH topology
 3FV6 A;  3GHD A;  4PCU A;  3K2V A;  5MMZ A;  2NYC A;  3LFZ A;  4L0D A;  2JA3 A;  5K24 C;  2OUX A;  3LFR A;  2UV5 A;  1XJH A;  5LXQ A;  2YVZ A;  4ESY B;  3HF7 A;  4FRY A;  2UV6 A;  4FXS A;  3KPD A;  2YZI A;  4DQW A;  3OCO A;  1Y5H A;  1VR9 A;  3NQR A;  3I8N A;  2RIH A;  3LV9 A;  2ZY9 A;  4IY0 A;  4P1O A;  2YVY A;  3KPC A;  3SL7 A;  4GQY A;  2D4Z A;  2QLV C;  4L3V A;  1YAV A;  3PC2 A;  2QH1 A;  4ESY A;  3FWS A;  2O16 A;  2P9M A;  1PVM A;  3JTF A;  4GQW A;  3FWR A;  3FNA A;  3LHH A;  4UUU A;  5K23 C;  3ORG A;  2OOY E;  2RC3 A;  2NYE A;  3L2B A;  4NOC A;  2OOX E;  3KH5 A;  2PFI A;  2QRD E;  5K25 C;  2EF7 A;  2YZQ A;  5IIP A;  4L28 A;  3TDH C;  1VZY A;  3PC3 A;  2RIF A;  4HG0 A;  3TE5 C;  3KXR A;  1O50 A;  2EMQ A;  4L27 A;  3KPB A;  5KS7 A;  3T4N C;  1PBJ A;  3FHM A;  3OI8 A;  3OCM A;  5K22 B;  3LQN A;  3L31 A;  1XKF A;  2YVX A;  4IY2 A;  3PC4 A;  4IY4 A;  2UV7 A;  1VQ0 A;  2UV4 A;  2J9L A;  2QRC E;  4IYS A;  4O9K A;  4COO A;  2QR1 E;  3GBY A;  4P1G A;  2QRE E;  4GQV A;  3K6E A;  3DDJ A;  4IY3 A; 
#chains in the Genus database with same CATH homology
 3FV6 A;  3GHD A;  4PCU A;  3K2V A;  5MMZ A;  2NYC A;  3LFZ A;  4L0D A;  2JA3 A;  5K24 C;  2OUX A;  3LFR A;  2UV5 A;  5LXQ A;  2YVZ A;  4ESY B;  3HF7 A;  4FRY A;  2UV6 A;  4FXS A;  3KPD A;  2YZI A;  4DQW A;  3OCO A;  1Y5H A;  1VR9 A;  3NQR A;  3I8N A;  2RIH A;  3LV9 A;  2ZY9 A;  4IY0 A;  4P1O A;  2YVY A;  3KPC A;  3SL7 A;  4GQY A;  2D4Z A;  2QLV C;  4L3V A;  1YAV A;  3PC2 A;  2QH1 A;  4ESY A;  3FWS A;  2O16 A;  2P9M A;  1PVM A;  3JTF A;  4GQW A;  3FWR A;  3FNA A;  3LHH A;  4UUU A;  5K23 C;  3ORG A;  2OOY E;  2RC3 A;  2NYE A;  3L2B A;  4NOC A;  2OOX E;  3KH5 A;  2PFI A;  2QRD E;  5K25 C;  2EF7 A;  2YZQ A;  5IIP A;  4L28 A;  3TDH C;  3PC3 A;  2RIF A;  4HG0 A;  3TE5 C;  3KXR A;  1O50 A;  2EMQ A;  4L27 A;  3KPB A;  5KS7 A;  3T4N C;  1PBJ A;  3FHM A;  3OI8 A;  3OCM A;  5K22 B;  3LQN A;  3L31 A;  1XKF A;  2YVX A;  4IY2 A;  3PC4 A;  4IY4 A;  2UV7 A;  2UV4 A;  2J9L A;  2QRC E;  4IYS A;  4O9K A;  4COO A;  2QR1 E;  3GBY A;  4P1G A;  2QRE E;  4GQV A;  3K6E A;  3DDJ A;  4IY3 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.