3OI8A

The crystal structure of functionally unknown conserved protein domain from neisseria meningitidis mc58
Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
156
structure length
156
Chain Sequence
SNASAEDVLNLLRQAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPEQFHLKSILRPAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDIIE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (25-38)TIV4 (116-120)TIV1 (39-42)AH2 (43-56)3H2 (110-115)AH3 (79-89)TI1 (66-69)S2 (73-74)3H1 (60-62)S4 (104-109)EMPTYS5 (134-136)AH4 (141-151)3H3 (120-122)TI2 (74-77)S1 (65-66)S3 (93-97)TIV2 (97-100)3H4 (125-127)TI4 (136-139)TI3 (100-103)Updating...
connected with : NaN
molecule tags Structural genomics, unknown function
source organism Neisseria meningitidis serogroup b
publication title The crystal structure of functionally unknown conserved protein domain from Neisseria meningitidis MC58
rcsb
molecule keywords Uncharacterized protein
total genus 46
structure length 156
sequence length 156
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 3oi8A01
3.90.1280.20 Alpha Beta Alpha-Beta Complex CBS domain Like CBS domain Like 3oi8A02
3NQRA 2QREE 3FWRA 4P1OA 2QLVC 3SL7A 2UV6A 2YZQA 1O50A 3K2VA 4O9KA 3OCMA 4IY2A 3OI8A 3ORGA 3KPBA 3L31A 2OUXA 2NYCA 2OOYE 1Y5HA 4L28A 2PFIA 2QRCE 4IY4A 2QR1E 3LHHA 2J9LA 2UV4A 4UUUA 1PBJA 4IY3A 4ESYA 3I8NA 3LFRA 3KH5A 3FHMA 2RIFA 2NYEA 1PVMA 5LXQA 2RC3A 3TE5C 4NOCA 2UV7A 3K6EA 3LV9A 3LQNA 1YAVA 5MMZA 4GQWA 4L27A 5IIPA 3T4NC 3TDHC 3GBYA 3PC3A 3JTFA 3FV6A 3PC2A 2YVYA 4PCUA 4L3VA 5K24C 5K22B 2JA3A 3GHDA 3FWSA 2D4ZA 4GQYA 4FRYA 4COOA 4P1GA 3PC4A 2O16A 2OOXE 3KXRA 2ZY9A 2EMQA 3DDJA 2RIHA 3KPCA 5K23C 4FXSA 1VR9A 4HG0A 3FNAA 4DQWA 4ESYB 1XKFA 2QH1A 4IY0A 2QRDE 4IYSA 5K25C 3OCOA 2YVXA 5KS7A 2EF7A 3KPDA 3L2BA 4L0DA 2UV5A 2YVZA 3LFZA 2P9MA 3HF7A 2YZIA 4GQVA
chains in the Genus database with same CATH superfamily
3NQRA 2QREE 3FWRA 4P1OA 2QLVC 3SL7A 2UV6A 2YZQA 1O50A 3K2VA 4O9KA 3OCMA 4IY2A 3OI8A 3ORGA 3KPBA 3L31A 2OUXA 2NYCA 2OOYE 1Y5HA 4L28A 2PFIA 1VZYA 2QRCE 4IY4A 2QR1E 3LHHA 2J9LA 2UV4A 4UUUA 1PBJA 4IY3A 4ESYA 3I8NA 3LFRA 3KH5A 3FHMA 2RIFA 1XJHA 2NYEA 1PVMA 5LXQA 2RC3A 3TE5C 4NOCA 2UV7A 3K6EA 3LV9A 1VQ0A 3LQNA 1YAVA 5MMZA 4GQWA 4L27A 5IIPA 3T4NC 3TDHC 3GBYA 3PC3A 3JTFA 3FV6A 3PC2A 2YVYA 4PCUA 4L3VA 5K24C 5K22B 2JA3A 3GHDA 3FWSA 2D4ZA 4GQYA 4FRYA 4COOA 4P1GA 3PC4A 2O16A 2OOXE 3KXRA 2ZY9A 2EMQA 3DDJA 2RIHA 3KPCA 5K23C 4FXSA 1VR9A 4HG0A 3FNAA 4DQWA 4ESYB 1XKFA 2QH1A 4IY0A 2QRDE 4IYSA 5K25C 3OCOA 2YVXA 5KS7A 2EF7A 3KPDA 3L2BA 4L0DA 2UV5A 2YVZA 3LFZA 2P9MA 3HF7A 2YZIA 4GQVA
chains in the Genus database with same CATH topology
3NQRA 2QREE 3FWRA 4P1OA 2QLVC 3SL7A 2UV6A 2YZQA 1O50A 3K2VA 4O9KA 3OCMA 4IY2A 3OI8A 3ORGA 3KPBA 3L31A 2OUXA 2NYCA 2OOYE 1Y5HA 4L28A 2PFIA 2QRCE 4IY4A 2QR1E 3LHHA 2J9LA 2UV4A 4UUUA 1PBJA 4IY3A 4ESYA 3I8NA 3LFRA 3KH5A 3FHMA 2RIFA 2NYEA 1PVMA 5LXQA 2RC3A 3TE5C 4NOCA 2UV7A 3K6EA 3LV9A 3LQNA 1YAVA 5MMZA 4GQWA 4L27A 5IIPA 3T4NC 3TDHC 3GBYA 3PC3A 3JTFA 3FV6A 3PC2A 2YVYA 4PCUA 4L3VA 5K24C 5K22B 2JA3A 3GHDA 3FWSA 2D4ZA 4GQYA 4FRYA 4COOA 4P1GA 3PC4A 2O16A 2OOXE 3KXRA 2ZY9A 2EMQA 3DDJA 2RIHA 3KPCA 5K23C 4FXSA 1VR9A 4HG0A 3FNAA 4DQWA 4ESYB 1XKFA 2QH1A 4IY0A 2QRDE 4IYSA 5K25C 3OCOA 2YVXA 5KS7A 2EF7A 3KPDA 3L2BA 4L0DA 2UV5A 2YVZA 3LFZA 2P9MA 3HF7A 2YZIA 4GQVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NQR A;  2QRE E;  3FWR A;  4P1O A;  2QLV C;  3SL7 A;  2UV6 A;  2YZQ A;  1O50 A;  3K2V A;  4O9K A;  3OCM A;  4IY2 A;  3OI8 A;  3ORG A;  3KPB A;  3L31 A;  2OUX A;  2NYC A;  2OOY E;  1Y5H A;  4L28 A;  2PFI A;  2QRC E;  4IY4 A;  2QR1 E;  3LHH A;  2J9L A;  2UV4 A;  4UUU A;  1PBJ A;  4IY3 A;  4ESY A;  3I8N A;  3LFR A;  3KH5 A;  3FHM A;  2RIF A;  2NYE A;  1PVM A;  5LXQ A;  2RC3 A;  3TE5 C;  4NOC A;  2UV7 A;  3K6E A;  3LV9 A;  3LQN A;  1YAV A;  5MMZ A;  4GQW A;  4L27 A;  5IIP A;  3T4N C;  3TDH C;  3GBY A;  3PC3 A;  3JTF A;  3FV6 A;  3PC2 A;  2YVY A;  4PCU A;  4L3V A;  5K24 C;  5K22 B;  2JA3 A;  3GHD A;  3FWS A;  2D4Z A;  4GQY A;  4FRY A;  4COO A;  4P1G A;  3PC4 A;  2O16 A;  2OOX E;  3KXR A;  2ZY9 A;  2EMQ A;  3DDJ A;  2RIH A;  3KPC A;  5K23 C;  4FXS A;  1VR9 A;  4HG0 A;  3FNA A;  4DQW A;  4ESY B;  1XKF A;  2QH1 A;  4IY0 A;  2QRD E;  4IYS A;  5K25 C;  3OCO A;  2YVX A;  5KS7 A;  2EF7 A;  3KPD A;  3L2B A;  4L0D A;  2UV5 A;  2YVZ A;  3LFZ A;  2P9M A;  3HF7 A;  2YZI A;  4GQV A; 
#chains in the Genus database with same CATH topology
 3NQR A;  2QRE E;  3FWR A;  4P1O A;  2QLV C;  3SL7 A;  2UV6 A;  2YZQ A;  1O50 A;  3K2V A;  4O9K A;  3OCM A;  4IY2 A;  3OI8 A;  3ORG A;  3KPB A;  3L31 A;  2OUX A;  2NYC A;  2OOY E;  1Y5H A;  4L28 A;  2PFI A;  1VZY A;  2QRC E;  4IY4 A;  2QR1 E;  3LHH A;  2J9L A;  2UV4 A;  4UUU A;  1PBJ A;  4IY3 A;  4ESY A;  3I8N A;  3LFR A;  3KH5 A;  3FHM A;  2RIF A;  1XJH A;  2NYE A;  1PVM A;  5LXQ A;  2RC3 A;  3TE5 C;  4NOC A;  2UV7 A;  3K6E A;  3LV9 A;  1VQ0 A;  3LQN A;  1YAV A;  5MMZ A;  4GQW A;  4L27 A;  5IIP A;  3T4N C;  3TDH C;  3GBY A;  3PC3 A;  3JTF A;  3FV6 A;  3PC2 A;  2YVY A;  4PCU A;  4L3V A;  5K24 C;  5K22 B;  2JA3 A;  3GHD A;  3FWS A;  2D4Z A;  4GQY A;  4FRY A;  4COO A;  4P1G A;  3PC4 A;  2O16 A;  2OOX E;  3KXR A;  2ZY9 A;  2EMQ A;  3DDJ A;  2RIH A;  3KPC A;  5K23 C;  4FXS A;  1VR9 A;  4HG0 A;  3FNA A;  4DQW A;  4ESY B;  1XKF A;  2QH1 A;  4IY0 A;  2QRD E;  4IYS A;  5K25 C;  3OCO A;  2YVX A;  5KS7 A;  2EF7 A;  3KPD A;  3L2B A;  4L0D A;  2UV5 A;  2YVZ A;  3LFZ A;  2P9M A;  3HF7 A;  2YZI A;  4GQV A; 
#chains in the Genus database with same CATH homology
 3NQR A;  2QRE E;  3FWR A;  4P1O A;  2QLV C;  3SL7 A;  2UV6 A;  2YZQ A;  1O50 A;  3K2V A;  4O9K A;  3OCM A;  4IY2 A;  3OI8 A;  3ORG A;  3KPB A;  3L31 A;  2OUX A;  2NYC A;  2OOY E;  1Y5H A;  4L28 A;  2PFI A;  2QRC E;  4IY4 A;  2QR1 E;  3LHH A;  2J9L A;  2UV4 A;  4UUU A;  1PBJ A;  4IY3 A;  4ESY A;  3I8N A;  3LFR A;  3KH5 A;  3FHM A;  2RIF A;  2NYE A;  1PVM A;  5LXQ A;  2RC3 A;  3TE5 C;  4NOC A;  2UV7 A;  3K6E A;  3LV9 A;  3LQN A;  1YAV A;  5MMZ A;  4GQW A;  4L27 A;  5IIP A;  3T4N C;  3TDH C;  3GBY A;  3PC3 A;  3JTF A;  3FV6 A;  3PC2 A;  2YVY A;  4PCU A;  4L3V A;  5K24 C;  5K22 B;  2JA3 A;  3GHD A;  3FWS A;  2D4Z A;  4GQY A;  4FRY A;  4COO A;  4P1G A;  3PC4 A;  2O16 A;  2OOX E;  3KXR A;  2ZY9 A;  2EMQ A;  3DDJ A;  2RIH A;  3KPC A;  5K23 C;  4FXS A;  1VR9 A;  4HG0 A;  3FNA A;  4DQW A;  4ESY B;  1XKF A;  2QH1 A;  4IY0 A;  2QRD E;  4IYS A;  5K25 C;  3OCO A;  2YVX A;  5KS7 A;  2EF7 A;  3KPD A;  3L2B A;  4L0D A;  2UV5 A;  2YVZ A;  3LFZ A;  2P9M A;  3HF7 A;  2YZI A;  4GQV A; 
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