3CD6 | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	115
structure length	115
Chain Sequence	SKTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQEDETVVVPGKVLGSGVLQKDVTVAAVDFSGTAETKIDQVGEAVSLEQAIENNPEGSHVRVIR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. pubmed doi rcsb
molecule keywords	50S ribosomal protein L2P
total genus	31
structure length	115
sequence length	115
ec nomenclature
pdb deposition date	2008-02-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
O	PF00828	Ribosomal_L27A	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.100.10.10	Alpha Beta	Ribosomal Protein L15; Chain: K; domain 2	Ribosomal Protein L15; Chain: K; domain 2	Ribosomal Protein L15; Chain: K; domain 2	3cd6O00

3G6EO 1KD1M 3CD6L 2OTJO 1VQKO 1VQ8L 3CC4L 1Q7YM 3CMEO 3I55L 3CMEL 1Q86M 3CCSL 3CCVO 3CC7O 1VQ5O 1K73P 1YJNL 1YIJL 3CCVL 3I56L 1NJIP 3CD6O 1Q81M 1VQPL 1VQ7L 1K8AM 1VQNO 1YHQO 3G6EL 1KC8M 2OTJL 1VQKL 1Q82P 2QA4O 1N8RP 1M1KP 3CCUO 3CCEO 1YJ9O 3CMAO 1KQSK 3CCUL 1QVGN 1YJ9L 3CMAL 2QEXO 1VQLO 3CCJO 3CCMO 1YJWO 3CC7L 1VQ5L 1KQSN 1VQLL 3CCML 1W2BK 1VQOO 1YI2O 1VQ6O 1K73M 1QVFK 1VQNL 1YHQL 1K9MP 2OTLO 1NJIM 1VQ6L 1QVGK 3G71O 1M90P 3CC2O 1W2BN 1KD1P 1VQ9O 2QA4L 3CC2L 1VQ4O 1QVFN 3CCRO 3CPWK 3OW2K 3CCLO 3G4SO 3CCEL 1VQ4L 1Q82M 3CCQO 1JJ2K 1Q7YP 1VQMO 1VQ8O 3CCLL 3G4SL 1N8RM 1YITO 3CCQL 3CC4O 1M1KM 1Q86P 1VQML 2QEXL 3CPWN 1YITL 3OW2N 1S72O 3CCJL 3I55O 1YJWL 1JJ2N 3CXCK 1S72L 3CCSO 1VQOL 1YI2L 1Q81P 2OTLL 1K8AP 3CXCN 1YJNO 3G71L 1YIJO 3I56O 1KC8P 1VQ9L 1VQPO 1K9MM 1VQ7O 3CCRL 1M90M
chains in the Genus database with same CATH superfamily

3G6EO 1KD1M 3CD6L 2OTJO 5DS4A 2YZSA 1VQ8L 1VQKO 3CC4L 1Q7YM 3CMEO 3I55L 3CMEL 1Q86M 3CCSL 4N06A 5DLJA 5DQTA 3CCVO 3CC7O 1VQ5O 1K73P 1YJNL 4WJ0A 1YIJL 3CCVL 3I56L 1NJIP 3CD6O 1Q81M 1VQPL 1VQ7L 5DQZA 1K8AM 1VQNO 1YHQO 3G6EL 1KC8M 3GODA 4P6IC 2OTJL 1VQKL 1Q82P 4W8KA 2QA4O 4QDLA 1N8RP 1M1KP 3CCUO 3CCEO 1YJ9O 3CMAO 1KQSK 3CCUL 1QVGN 1YJ9L 3CMAL 2QEXO 1VQLO 3CCJO 3CCMO 1YJWO 3CC7L 1VQ5L 1KQSN 1VQLL 3CCML 1W2BK 4XTKA 1VQOO 1YI2O 1VQ6O 1K73M 1QVFK 5DS6A 1VQNL 1YHQL 1K9MP 2OTLO 1NJIM 1VQ6L 1QVGK 3G71O 1M90P 3CC2O 1W2BN 1KD1P 1VQ9O 2QA4L 3CC2L 1VQ4O 1QVFN 3CCRO 5DS5A 3CPWK 3OW2K 3CCLO 3G4SO 3CCEL 1VQ4L 1Q82M 3CCQO 1JJ2K 1Q7YP 1VQMO 1VQ8O 3CCLL 3G4SL 1N8RM 1YITO 3CCQL 3CC4O 1M1KM 5FCLA 1Q86P 1VQML 2QEXL 3CPWN 1YITL 3OW2N 1S72O 3CCJL 3I55O 1YJWL 3NKDA 1JJ2N 3CXCK 1S72L 3CCSO 1VQOL 1YI2L 1Q81P 2OTLL 1K8AP 3CXCN 1YJNO 3G71L 1YIJO 3I56O 1KC8P 1VQ9L 1VQPO 1K9MM 1VQ7O 3CCRL 1M90M
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3G6E O;  1KD1 M;  3CD6 L;  2OTJ O;  1VQK O;  1VQ8 L;  3CC4 L;  1Q7Y M;  3CME O;  3I55 L;  3CME L;  1Q86 M;  3CCS L;  3CCV O;  3CC7 O;  1VQ5 O;  1K73 P;  1YJN L;  1YIJ L;  3CCV L;  3I56 L;  1NJI P;  3CD6 O;  1Q81 M;  1VQP L;  1VQ7 L;  1K8A M;  1VQN O;  1YHQ O;  3G6E L;  1KC8 M;  2OTJ L;  1VQK L;  1Q82 P;  2QA4 O;  1N8R P;  1M1K P;  3CCU O;  3CCE O;  1YJ9 O;  3CMA O;  1KQS K;  3CCU L;  1QVG N;  1YJ9 L;  3CMA L;  2QEX O;  1VQL O;  3CCJ O;  3CCM O;  1YJW O;  3CC7 L;  1VQ5 L;  1KQS N;  1VQL L;  3CCM L;  1W2B K;  1VQO O;  1YI2 O;  1VQ6 O;  1K73 M;  1QVF K;  1VQN L;  1YHQ L;  1K9M P;  2OTL O;  1NJI M;  1VQ6 L;  1QVG K;  3G71 O;  1M90 P;  3CC2 O;  1W2B N;  1KD1 P;  1VQ9 O;  2QA4 L;  3CC2 L;  1VQ4 O;  1QVF N;  3CCR O;  3CPW K;  3OW2 K;  3CCL O;  3G4S O;  3CCE L;  1VQ4 L;  1Q82 M;  3CCQ O;  1JJ2 K;  1Q7Y P;  1VQM O;  1VQ8 O;  3CCL L;  3G4S L;  1N8R M;  1YIT O;  3CCQ L;  3CC4 O;  1M1K M;  1Q86 P;  1VQM L;  2QEX L;  3CPW N;  1YIT L;  3OW2 N;  1S72 O;  3CCJ L;  3I55 O;  1YJW L;  1JJ2 N;  3CXC K;  1S72 L;  3CCS O;  1VQO L;  1YI2 L;  1Q81 P;  2OTL L;  1K8A P;  3CXC N;  1YJN O;  3G71 L;  1YIJ O;  3I56 O;  1KC8 P;  1VQ9 L;  1VQP O;  1K9M M;  1VQ7 O;  3CCR L;  1M90 M; 
#chains in the Genus database with same CATH topology
 3G6E O;  1KD1 M;  3CD6 L;  2OTJ O;  5DS4 A;  2YZS A;  1VQ8 L;  1VQK O;  3CC4 L;  1Q7Y M;  3CME O;  3I55 L;  3CME L;  1Q86 M;  3CCS L;  4N06 A;  5DLJ A;  5DQT A;  3CCV O;  3CC7 O;  1VQ5 O;  1K73 P;  1YJN L;  4WJ0 A;  1YIJ L;  3CCV L;  3I56 L;  1NJI P;  3CD6 O;  1Q81 M;  1VQP L;  1VQ7 L;  5DQZ A;  1K8A M;  1VQN O;  1YHQ O;  3G6E L;  1KC8 M;  3GOD A;  4P6I C;  2OTJ L;  1VQK L;  1Q82 P;  4W8K A;  2QA4 O;  4QDL A;  1N8R P;  1M1K P;  3CCU O;  3CCE O;  1YJ9 O;  3CMA O;  1KQS K;  3CCU L;  1QVG N;  1YJ9 L;  3CMA L;  2QEX O;  1VQL O;  3CCJ O;  3CCM O;  1YJW O;  3CC7 L;  1VQ5 L;  1KQS N;  1VQL L;  3CCM L;  1W2B K;  4XTK A;  1VQO O;  1YI2 O;  1VQ6 O;  1K73 M;  1QVF K;  5DS6 A;  1VQN L;  1YHQ L;  1K9M P;  2OTL O;  1NJI M;  1VQ6 L;  1QVG K;  3G71 O;  1M90 P;  3CC2 O;  1W2B N;  1KD1 P;  1VQ9 O;  2QA4 L;  3CC2 L;  1VQ4 O;  1QVF N;  3CCR O;  5DS5 A;  3CPW K;  3OW2 K;  3CCL O;  3G4S O;  3CCE L;  1VQ4 L;  1Q82 M;  3CCQ O;  1JJ2 K;  1Q7Y P;  1VQM O;  1VQ8 O;  3CCL L;  3G4S L;  1N8R M;  1YIT O;  3CCQ L;  3CC4 O;  1M1K M;  5FCL A;  1Q86 P;  1VQM L;  2QEX L;  3CPW N;  1YIT L;  3OW2 N;  1S72 O;  3CCJ L;  3I55 O;  1YJW L;  3NKD A;  1JJ2 N;  3CXC K;  1S72 L;  3CCS O;  1VQO L;  1YI2 L;  1Q81 P;  2OTL L;  1K8A P;  3CXC N;  1YJN O;  3G71 L;  1YIJ O;  3I56 O;  1KC8 P;  1VQ9 L;  1VQP O;  1K9M M;  1VQ7 O;  3CCR L;  1M90 M; 
#chains in the Genus database with same CATH homology
 3G6E O;  1KD1 M;  3CD6 L;  2OTJ O;  5DS4 A;  2YZS A;  1VQ8 L;  1VQK O;  3CC4 L;  1Q7Y M;  3CME O;  3I55 L;  3CME L;  1Q86 M;  3CCS L;  4N06 A;  5DLJ A;  5DQT A;  3CCV O;  3CC7 O;  1VQ5 O;  1K73 P;  1YJN L;  4WJ0 A;  1YIJ L;  3CCV L;  3I56 L;  1NJI P;  3CD6 O;  1Q81 M;  1VQP L;  1VQ7 L;  5DQZ A;  1K8A M;  1VQN O;  1YHQ O;  3G6E L;  1KC8 M;  3GOD A;  4P6I C;  2OTJ L;  1VQK L;  1Q82 P;  4W8K A;  2QA4 O;  4QDL A;  1N8R P;  1M1K P;  3CCU O;  3CCE O;  1YJ9 O;  3CMA O;  1KQS K;  3CCU L;  1QVG N;  1YJ9 L;  3CMA L;  2QEX O;  1VQL O;  3CCJ O;  3CCM O;  1YJW O;  3CC7 L;  1VQ5 L;  1KQS N;  1VQL L;  3CCM L;  1W2B K;  4XTK A;  1VQO O;  1YI2 O;  1VQ6 O;  1K73 M;  1QVF K;  5DS6 A;  1VQN L;  1YHQ L;  1K9M P;  2OTL O;  1NJI M;  1VQ6 L;  1QVG K;  3G71 O;  1M90 P;  3CC2 O;  1W2B N;  1KD1 P;  1VQ9 O;  2QA4 L;  3CC2 L;  1VQ4 O;  1QVF N;  3CCR O;  5DS5 A;  3CPW K;  3OW2 K;  3CCL O;  3G4S O;  3CCE L;  1VQ4 L;  1Q82 M;  3CCQ O;  1JJ2 K;  1Q7Y P;  1VQM O;  1VQ8 O;  3CCL L;  3G4S L;  1N8R M;  1YIT O;  3CCQ L;  3CC4 O;  1M1K M;  5FCL A;  1Q86 P;  1VQM L;  2QEX L;  3CPW N;  1YIT L;  3OW2 N;  1S72 O;  3CCJ L;  3I55 O;  1YJW L;  3NKD A;  1JJ2 N;  3CXC K;  1S72 L;  3CCS O;  1VQO L;  1YI2 L;  1Q81 P;  2OTL L;  1K8A P;  3CXC N;  1YJN O;  3G71 L;  1YIJ O;  3I56 O;  1KC8 P;  1VQ9 L;  1VQP O;  1K9M M;  1VQ7 O;  3CCR L;  1M90 M;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3CD6O

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations