The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
79
|
sequence length |
307
|
structure length |
278
|
Chain Sequence |
GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEYPA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA Recognition Through a Combination of Rigid Docking and Induced Fit
pubmed doi rcsb |
| molecule keywords |
tRNA pseudouridine synthase B
|
| molecule tags |
Lyase
|
| source organism |
Escherichia coli
|
| total genus |
79
|
| structure length |
278
|
| sequence length |
307
|
| ec nomenclature |
ec
5.4.99.25: tRNA pseudouridine(55) synthase. |
| pdb deposition date | 2003-10-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01509 | TruB_N | TruB family pseudouridylate synthase (N terminal domain) |
| A | PF09157 | TruB-C_2 | Pseudouridine synthase II TruB, C-terminal |
| A | PF16198 | TruB_C_2 | tRNA pseudouridylate synthase B C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 | PUA domain | ||
| Alpha Beta | 2-Layer Sandwich | Pseudouridine synthase | Pseudouridine synthase |
#chains in the Genus database with same CATH superfamily 3DH3 A; 3LWV A; 4LGT A; 4LAB A; 3LWQ A; 3MQK A; 1ZS7 A; 3LWR A; 1ZE2 A; 1K8W A; 2AUS A; 2B78 A; 3LDF A; 3UAI A; 2EY4 A; 1IT7 A; 2J5V A; 3HJY A; 1V9K A; 3LWO A; 1R3F A; 1WXW A; 2J5T A; 3VSE A; 1KSK A; 2AS0 A; 1SQW A; 2P38 A; 1KSL A; 1IQ8 A; 2RFK A; 2CWW A; 1R3E A; 1J2B A; 1KSV A; 4DMG A; 4Q1T A; 1T5Y A; 3U28 A; 1WXX A; 1PRZ A; 2APO A; 2IST A; 1V9F A; 3D79 A; 2Q07 A; 2I82 A; 3HJW A; 1IT8 A; 1QYU A; 1ZE1 A; 2HVY A; 1XPI A; 2CX0 A; 1ZL3 A; 1SGV A; 3HAX A; 1Q7H A; 3C0K A; 2CX1 A; 2AB4 A; 3LWP A; #chains in the Genus database with same CATH topology 3DH3 A; 3LWR A; 1ZE2 A; 1SI7 A; 3M65 A; 3LDF A; 1IT7 A; 2J5T A; 2FRX A; 3VSE A; 1IQ8 A; 3M6U A; 4Q1T A; 1UOY A; 2I82 A; 2Z0T A; 1TE7 A; 2ANE A; 1Z2Z A; 3C0K A; 3M6W A; 3MQK A; 1ZS7 A; 1K8W A; 2AUS A; 2EY4 A; 3LWO A; 1WXW A; 1KSK A; 2AS0 A; 2RFK A; 4CI1 B; 1ZBO A; 1WXX A; 2Q07 A; 3HJW A; 4CI3 B; 1ZE1 A; 2CX0 A; 1SGV A; 3LJC A; 3LWV A; 4LGT A; 4LAB A; 3M4X A; 3IUW A; 3UAI A; 2J5V A; 4TZ4 C; 1V9K A; 1R3F A; 3M6V A; 2E5O A; 4CI2 B; 1SQW A; 2P38 A; 2CWW A; 1J2B A; 4DMG A; 2KKU A; 1T5Y A; 1V9F A; 3ZV0 C; 1IT8 A; 1QYU A; 2HVY A; 3M6X A; 1ZL3 A; 3HAX A; 1XNE A; 2AB4 A; 3LWP A; 3LWQ A; 1WK2 A; 2B78 A; 3HJY A; 1SB7 A; 1KSL A; 1R3E A; 1KSV A; 3U28 A; 2APO A; 1PRZ A; 2IST A; 3D79 A; 1S04 A; 2DP9 A; 1XPI A; 1Q7H A; 1SZW A; 2CX1 A; #chains in the Genus database with same CATH homology 3DH3 A; 3LWV A; 4LGT A; 4LAB A; 3LWQ A; 3MQK A; 1ZS7 A; 3LWR A; 1ZE2 A; 1K8W A; 2AUS A; 2B78 A; 1SI7 A; 3LDF A; 3UAI A; 2EY4 A; 1IT7 A; 2J5V A; 3HJY A; 1V9K A; 3LWO A; 1R3F A; 1WXW A; 2J5T A; 3VSE A; 1KSK A; 1SB7 A; 2AS0 A; 1SQW A; 2P38 A; 1KSL A; 1IQ8 A; 2RFK A; 2CWW A; 1R3E A; 1J2B A; 1KSV A; 4DMG A; 4Q1T A; 1T5Y A; 3U28 A; 1WXX A; 1PRZ A; 2APO A; 2IST A; 1V9F A; 3D79 A; 2Q07 A; 2I82 A; 3HJW A; 1IT8 A; 1QYU A; 1ZE1 A; 2HVY A; 1XPI A; 2CX0 A; 1ZL3 A; 1SGV A; 3HAX A; 1Q7H A; 1Z2Z A; 1SZW A; 3C0K A; 2CX1 A; 2AB4 A; 3LWP A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
