The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
77
|
sequence length |
308
|
structure length |
308
|
Chain Sequence |
MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVYWVKMRLGLITETFDITGEVVEERECNVTEEEIREAIFSFVGEYDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRESVGPHTIEESLNVFEAAPEEIENRIIPLEKCLEWLPRVVVHQESTKMILNGSQIHLEMLKEWDGFKKGEVVRVFNEEGRLLALAEAERNSSFLETLRKHERQRRVLTLRKVFQT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Conformational change of pseudouridine 55
synthase upon its association with RNA substrate
pubmed doi rcsb |
| molecule tags |
Lyase
|
| source organism |
Thermotoga maritima
|
| molecule keywords |
tRNA pseudouridine synthase B
|
| total genus |
77
|
| structure length |
308
|
| sequence length |
308
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
5.4.99.25: tRNA pseudouridine(55) synthase. |
| pdb deposition date | 2005-04-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01472 | PUA | PUA domain |
| A | PF01509 | TruB_N | TruB family pseudouridylate synthase (N terminal domain) |
| A | PF16198 | TruB_C_2 | tRNA pseudouridylate synthase B C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 | PUA domain | ||
| Alpha Beta | 2-Layer Sandwich | Pseudouridine synthase | Pseudouridine synthase |
#chains in the Genus database with same CATH superfamily 1KSV A; 3UAI A; 3D79 A; 1PRZ A; 1V9K A; 3LWO A; 1WXW A; 1IT8 A; 3LWR A; 3HJW A; 1SGV A; 4LGT A; 3LWQ A; 2HVY A; 2I82 A; 4DMG A; 2IST A; 4LAB A; 2AB4 A; 1IQ8 A; 1WXX A; 1ZE2 A; 1ZS7 A; 1ZL3 A; 3C0K A; 1XPI A; 2APO A; 2EY4 A; 3DH3 A; 2RFK A; 1KSK A; 2J5V A; 2P38 A; 1R3E A; 1J2B A; 3LWP A; 2Q07 A; 2B78 A; 3LDF A; 1V9F A; 1Q7H A; 3LWV A; 3MQK A; 3HAX A; 1KSL A; 1QYU A; 1K8W A; 2AS0 A; 1IT7 A; 1R3F A; 2CX0 A; 3VSE A; 2AUS A; 4Q1T A; 2CWW A; 1SQW A; 1ZE1 A; 3HJY A; 2J5T A; 1T5Y A; 2CX1 A; 3U28 A; #chains in the Genus database with same CATH topology 3LWO A; 1WXW A; 2Z0T A; 3M6V A; 2EY4 A; 1ZL3 A; 2APO A; 3M6W A; 3LWP A; 1XNE A; 1Q7H A; 1Z2Z A; 1QYU A; 1IT7 A; 2CX0 A; 4Q1T A; 1SQW A; 1K8W A; 1SZW A; 1KSV A; 1SB7 A; 1IT8 A; 3HJW A; 1SGV A; 4LGT A; 2HVY A; 4DMG A; 2ANE A; 2AB4 A; 1IQ8 A; 1WXX A; 1ZS7 A; 3LJC A; 1TE7 A; 3LWV A; 1KSL A; 2AS0 A; 1R3F A; 3ZV0 C; 2CWW A; 1T5Y A; 2DP9 A; 3D79 A; 2KKU A; 3M6X A; 1V9K A; 3LWR A; 3LWQ A; 1ZBO A; 2I82 A; 2IST A; 4CI3 B; 4CI1 B; 4LAB A; 1ZE2 A; 3DH3 A; 2RFK A; 3C0K A; 3M65 A; 1KSK A; 2J5V A; 2P38 A; 4TZ4 C; 1R3E A; 1J2B A; 3M6U A; 1V9F A; 3MQK A; 3HAX A; 1WK2 A; 2AUS A; 1ZE1 A; 4CI2 B; 2J5T A; 2CX1 A; 3UAI A; 3IUW A; 1PRZ A; 1UOY A; 2E5O A; 1SI7 A; 3M4X A; 1XPI A; 2Q07 A; 2B78 A; 3LDF A; 3VSE A; 2FRX A; 3HJY A; 1S04 A; 3U28 A; #chains in the Genus database with same CATH homology 3HJW A; 1KSV A; 1SB7 A; 3UAI A; 3D79 A; 1PRZ A; 1V9K A; 3LWO A; 1WXW A; 1IT8 A; 3U28 A; 3LWR A; 1SGV A; 4LGT A; 3LWQ A; 2HVY A; 2I82 A; 4DMG A; 2IST A; 4LAB A; 2AB4 A; 1SI7 A; 1IQ8 A; 1WXX A; 1ZE2 A; 1ZS7 A; 1ZL3 A; 3C0K A; 1XPI A; 2APO A; 2EY4 A; 3DH3 A; 2RFK A; 1KSK A; 2J5V A; 2P38 A; 1R3E A; 1J2B A; 3LWP A; 2Q07 A; 2B78 A; 3LDF A; 1V9F A; 1Q7H A; 1Z2Z A; 3LWV A; 3HAX A; 3MQK A; 1KSL A; 1QYU A; 1K8W A; 2AS0 A; 1IT7 A; 1R3F A; 2CX0 A; 3VSE A; 2AUS A; 4Q1T A; 2CWW A; 1SQW A; 1ZE1 A; 3HJY A; 2J5T A; 1T5Y A; 2CX1 A; 1SZW A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
