2Q18 | Genus

Total Genus 82

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	82
sequence length	291
structure length	282
Chain Sequence	MKLFRVVKRGYYISYAILDNSTIIRLDEDPIKALMRYSENKEVLGDRVTGIDYQSLLKSFQINDIRITKPIDPPEVWGSGISYENVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSARDLEAENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIGTLITPVKKRRK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 282 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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282 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Sulfolobus solfataricus
publication title	Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily. pubmed doi rcsb
molecule keywords	2-keto-3-deoxy-D-arabinonate dehydratase
total genus	82
structure length	282
sequence length	291
ec nomenclature	ec 4.2.1.141: 2-dehydro-3-deoxy-D-arabinonate dehydratase.
pdb deposition date	2007-05-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
X	PF01557	FAA_hydrolase	Fumarylacetoacetate (FAA) hydrolase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.330.40	Alpha Beta	Roll	Vcp-like ATPase; Chain A, domain 2	Vcp-like ATPase; Chain A, domain 2	2q18X01
3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase; domain 2	Fumarylacetoacetase-like, C-terminal domain	2q18X02

1NKQA 5D2HA 4PFZA 3QDFA 1QCNA 4DBHA 1SAWA 2Q1CX 3LZKA 1NR9A 5D2IA 1GTTA 3R6OA 2EB6A 2Q18X 1SV6A 4DBFA 5D2JA 4MAQA 2EB5A 2WQTA 2EB4A 3RR6A 1QQJA 2Q19X 3BQBA 1I7OA 5D2FA 1HYOA 2Q1DX 1QCOA 5D2KA 1WZOA 2DFUA 3V77A 4QKUA 2HZYA 3S52A 2Q1AX 5D2GA
chains in the Genus database with same CATH superfamily

4AQ7A 4PFZA 5EPPA 3QDFA 2PWYA 2Q1CX 2JV2A 1SV6A 2LW6A 4DBFA 5FTMA 4CQNA 2XDPA 1CZ5A 4KLNA 5FTJA 1I7OA 2B25A 2Q1DX 4ARCA 1QCOA 5GLFA 1QDNA 1WZOA 5C18A 2DFUA 4KDIA 3S52A 3MB5A 1NKQA 2GF7A 2YUJA 5D6YA 5D2HA 4DBHA 1SAWA 2GFAA 3LZKA 3ZJVA 5CD1A 2Q18X 5D2JA 2KY9A 2EB5A 2WQTA 3FPRA 3QC8A 4RV0A 1ZC1A 5D2FA 5FTNA 5CCXA 4KODA 4QKUA 2Q1AX 3FPUA 5B6CA 1R7RA 2QQSA 1QCSA 2MM2A 1CR5A 5DYGA 2MM0A 3ZJTA 4AS1A 5DYIA 4ARIA 1NR9A 5D2IA 5C1BA 3LHDA 4MAQA 3HU1A 5FTKA 2EB4A 1QQJA 3BQBA 3LGAA 4KO8A 1S3SA 1HYOA 2YVLA 5D2KA 5D6XA 1CZ4A 3HU3A 2HZYA 1WLFA 5D2GA 3QWZA 5D6WA 1E32A 1QCNA 3FPTA 5CCBA 5ERGB 3HU2A 1GTTA 3R6OA 3ZGZA 2EB6A 2PJHB 3ZJUA 2QQRA 5FTLA 3RR6A 2Q19X 4UC4A 3CF2A 3QQ8A 5EQJB 4KDLA 1O54A 3QQ7A 4FIBA 1I9GA 3TIWA 3V77A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1NKQ A;  5D2H A;  4PFZ A;  3QDF A;  1QCN A;  4DBH A;  1SAW A;  2Q1C X;  3LZK A;  1NR9 A;  5D2I A;  1GTT A;  3R6O A;  2EB6 A;  2Q18 X;  1SV6 A;  4DBF A;  5D2J A;  4MAQ A;  2EB5 A;  2WQT A;  2EB4 A;  3RR6 A;  1QQJ A;  2Q19 X;  3BQB A;  1I7O A;  5D2F A;  1HYO A;  2Q1D X;  1QCO A;  5D2K A;  1WZO A;  2DFU A;  3V77 A;  4QKU A;  2HZY A;  3S52 A;  2Q1A X;  5D2G A; 
#chains in the Genus database with same CATH topology
 4AQ7 A;  4PFZ A;  5EPP A;  3QDF A;  2PWY A;  2Q1C X;  2JV2 A;  1SV6 A;  2LW6 A;  4DBF A;  5FTM A;  4CQN A;  2XDP A;  1CZ5 A;  4KLN A;  5FTJ A;  1I7O A;  2B25 A;  2Q1D X;  4ARC A;  1QCO A;  5GLF A;  1QDN A;  1WZO A;  5C18 A;  2DFU A;  4KDI A;  3S52 A;  3MB5 A;  1NKQ A;  2GF7 A;  2YUJ A;  5D6Y A;  5D2H A;  4DBH A;  1SAW A;  2GFA A;  3LZK A;  3ZJV A;  5CD1 A;  2Q18 X;  5D2J A;  2KY9 A;  2EB5 A;  2WQT A;  3FPR A;  3QC8 A;  4RV0 A;  1ZC1 A;  5D2F A;  5FTN A;  5CCX A;  4KOD A;  4QKU A;  2Q1A X;  3FPU A;  5B6C A;  1R7R A;  2QQS A;  1QCS A;  2MM2 A;  1CR5 A;  5DYG A;  2MM0 A;  3ZJT A;  4AS1 A;  5DYI A;  4ARI A;  1NR9 A;  5D2I A;  5C1B A;  3LHD A;  4MAQ A;  3HU1 A;  5FTK A;  2EB4 A;  1QQJ A;  3BQB A;  3LGA A;  4KO8 A;  1S3S A;  1HYO A;  2YVL A;  5D2K A;  5D6X A;  1CZ4 A;  3HU3 A;  2HZY A;  1WLF A;  5D2G A;  3QWZ A;  5D6W A;  1E32 A;  1QCN A;  3FPT A;  5CCB A;  5ERG B;  3HU2 A;  1GTT A;  3R6O A;  3ZGZ A;  2EB6 A;  2PJH B;  3ZJU A;  2QQR A;  5FTL A;  3RR6 A;  2Q19 X;  4UC4 A;  3CF2 A;  3QQ8 A;  5EQJ B;  4KDL A;  1O54 A;  3QQ7 A;  4FIB A;  1I9G A;  3TIW A;  3V77 A; 
#chains in the Genus database with same CATH homology
 4AQ7 A;  4PFZ A;  5EPP A;  3QDF A;  2PWY A;  2Q1C X;  2JV2 A;  1SV6 A;  2LW6 A;  4DBF A;  5FTM A;  4CQN A;  2XDP A;  1CZ5 A;  4KLN A;  5FTJ A;  1I7O A;  2B25 A;  2Q1D X;  4ARC A;  1QCO A;  5GLF A;  1QDN A;  1WZO A;  5C18 A;  2DFU A;  4KDI A;  3S52 A;  3MB5 A;  1NKQ A;  2GF7 A;  2YUJ A;  5D6Y A;  5D2H A;  4DBH A;  1SAW A;  2GFA A;  3LZK A;  3ZJV A;  5CD1 A;  2Q18 X;  5D2J A;  2KY9 A;  2EB5 A;  2WQT A;  3FPR A;  3QC8 A;  4RV0 A;  1ZC1 A;  5D2F A;  5FTN A;  5CCX A;  4KOD A;  4QKU A;  2Q1A X;  3FPU A;  5B6C A;  1R7R A;  2QQS A;  1QCS A;  2MM2 A;  1CR5 A;  5DYG A;  2MM0 A;  3ZJT A;  4AS1 A;  5DYI A;  4ARI A;  1NR9 A;  5D2I A;  5C1B A;  3LHD A;  4MAQ A;  3HU1 A;  5FTK A;  2EB4 A;  1QQJ A;  3BQB A;  3LGA A;  4KO8 A;  1S3S A;  1HYO A;  2YVL A;  5D2K A;  5D6X A;  1CZ4 A;  3HU3 A;  2HZY A;  1WLF A;  5D2G A;  3QWZ A;  5D6W A;  1E32 A;  1QCN A;  3FPT A;  5CCB A;  5ERG B;  3HU2 A;  1GTT A;  3R6O A;  3ZGZ A;  2EB6 A;  2PJH B;  3ZJU A;  2QQR A;  5FTL A;  3RR6 A;  2Q19 X;  4UC4 A;  3CF2 A;  3QQ8 A;  5EQJ B;  4KDL A;  1O54 A;  3QQ7 A;  4FIB A;  1I9G A;  3TIW A;  3V77 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2Q18X

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations