2Q1A | Genus

Total Genus 79

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	79
sequence length	291
structure length	291
Chain Sequence	MKLFRVVKRGYYISYAILDNSTIIRLDEDPIKALMRYSENKEVLGDRVTGIDYQSLLKSFQINDIRITKPIDPPEVWGSGISYEMARERYSEENVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSARDLEAENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIGTLITPVKKRRK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 291 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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291 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Sulfolobus solfataricus
publication title	Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily. pubmed doi rcsb
molecule keywords	2-keto-3-deoxy-D-arabinonate dehydratase
total genus	79
structure length	291
sequence length	291
ec nomenclature	ec 4.2.1.141: 2-dehydro-3-deoxy-D-arabinonate dehydratase.
pdb deposition date	2007-05-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
X	PF01557	FAA_hydrolase	Fumarylacetoacetate (FAA) hydrolase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.330.40	Alpha Beta	Roll	Vcp-like ATPase; Chain A, domain 2	Vcp-like ATPase; Chain A, domain 2	2q1aX01
3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase; domain 2	Fumarylacetoacetase-like, C-terminal domain	2q1aX02

2Q1AX 4DBHA 1SV6A 5D2HA 3RR6A 1NKQA 4QKUA 4DBFA 1QCNA 5D2JA 2Q18X 2DFUA 5D2IA 1QQJA 2EB5A 3QDFA 2Q1DX 4PFZA 1HYOA 3S52A 2EB6A 1WZOA 1I7OA 2Q1CX 2EB4A 5D2FA 5D2KA 1QCOA 2Q19X 3R6OA 3V77A 2HZYA 1NR9A 2WQTA 1SAWA 3LZKA 3BQBA 4MAQA 5D2GA 1GTTA
chains in the Genus database with same CATH superfamily

3HU2A 4DBHA 4AQ7A 1QCSA 4ARCA 1CR5A 2YUJA 5CCXA 1QCNA 5FTLA 2KY9A 5EPPA 2QQSA 4RV0A 2MM2A 3QC8A 4PFZA 1I9GA 3FPUA 5FTMA 3MB5A 2Q1CX 2XDPA 1O54A 5D2KA 1QCOA 3QWZA 3ZJVA 1E32A 5GLFA 2HZYA 1WLFA 2WQTA 3CF2A 5D6YA 3ZJTA 5CD1A 1CZ4A 2GF7A 1SV6A 5D2HA 3RR6A 4KDLA 2PJHB 1NKQA 4QKUA 3HU1A 5DYGA 1QDNA 2B25A 2EB5A 3FPTA 1CZ5A 3FPRA 4AS1A 2EB6A 1WZOA 5EQJB 2EB4A 4ARIA 2YVLA 5D6WA 5FTNA 1NR9A 1SAWA 3BQBA 5D2GA 3V77A 4KDIA 3ZJUA 2LW6A 5D6XA 4KLNA 2MM0A 5C18A 5D2JA 2DFUA 5D2IA 2QQRA 5CCBA 4CQNA 1S3SA 3QDFA 2Q1DX 5FTJA 5C1BA 3QQ8A 3S52A 3LGAA 1I7OA 3ZGZA 2PWYA 4KO8A 2JV2A 2Q19X 3R6OA 4MAQA 1GTTA 2Q1AX 5FTKA 2GFAA 4DBFA 5B6CA 1ZC1A 2Q18X 4FIBA 3TIWA 1R7RA 1QQJA 1HYOA 3QQ7A 5D2FA 5ERGB 4UC4A 3LHDA 5DYIA 3LZKA 4KODA 3HU3A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2Q1A X;  4DBH A;  1SV6 A;  5D2H A;  3RR6 A;  1NKQ A;  4QKU A;  4DBF A;  1QCN A;  5D2J A;  2Q18 X;  2DFU A;  5D2I A;  1QQJ A;  2EB5 A;  3QDF A;  2Q1D X;  4PFZ A;  1HYO A;  3S52 A;  2EB6 A;  1WZO A;  1I7O A;  2Q1C X;  2EB4 A;  5D2F A;  5D2K A;  1QCO A;  2Q19 X;  3R6O A;  3V77 A;  2HZY A;  1NR9 A;  2WQT A;  1SAW A;  3LZK A;  3BQB A;  4MAQ A;  5D2G A;  1GTT A; 
#chains in the Genus database with same CATH topology
 3HU2 A;  4DBH A;  4AQ7 A;  1QCS A;  4ARC A;  1CR5 A;  2YUJ A;  5CCX A;  1QCN A;  5FTL A;  2KY9 A;  5EPP A;  2QQS A;  4RV0 A;  2MM2 A;  3QC8 A;  4PFZ A;  1I9G A;  3FPU A;  5FTM A;  3MB5 A;  2Q1C X;  2XDP A;  1O54 A;  5D2K A;  1QCO A;  3QWZ A;  3ZJV A;  1E32 A;  5GLF A;  2HZY A;  1WLF A;  2WQT A;  3CF2 A;  5D6Y A;  3ZJT A;  5CD1 A;  1CZ4 A;  2GF7 A;  1SV6 A;  5D2H A;  3RR6 A;  4KDL A;  2PJH B;  1NKQ A;  4QKU A;  3HU1 A;  5DYG A;  1QDN A;  2B25 A;  2EB5 A;  3FPT A;  1CZ5 A;  3FPR A;  4AS1 A;  2EB6 A;  1WZO A;  5EQJ B;  2EB4 A;  4ARI A;  2YVL A;  5D6W A;  5FTN A;  1NR9 A;  1SAW A;  3BQB A;  5D2G A;  3V77 A;  4KDI A;  3ZJU A;  2LW6 A;  5D6X A;  4KLN A;  2MM0 A;  5C18 A;  5D2J A;  2DFU A;  5D2I A;  2QQR A;  5CCB A;  4CQN A;  1S3S A;  3QDF A;  2Q1D X;  5FTJ A;  5C1B A;  3QQ8 A;  3S52 A;  3LGA A;  1I7O A;  3ZGZ A;  2PWY A;  4KO8 A;  2JV2 A;  2Q19 X;  3R6O A;  4MAQ A;  1GTT A;  2Q1A X;  5FTK A;  2GFA A;  4DBF A;  5B6C A;  1ZC1 A;  2Q18 X;  4FIB A;  3TIW A;  1R7R A;  1QQJ A;  1HYO A;  3QQ7 A;  5D2F A;  5ERG B;  4UC4 A;  3LHD A;  5DYI A;  3LZK A;  4KOD A;  3HU3 A; 
#chains in the Genus database with same CATH homology
 3HU2 A;  4DBH A;  4AQ7 A;  1QCS A;  4ARC A;  1CR5 A;  2YUJ A;  5CCX A;  1QCN A;  5FTL A;  2KY9 A;  5EPP A;  2QQS A;  4RV0 A;  2MM2 A;  3QC8 A;  4PFZ A;  1I9G A;  3FPU A;  5FTM A;  3MB5 A;  2Q1C X;  2XDP A;  1O54 A;  5D2K A;  1QCO A;  3QWZ A;  3ZJV A;  1E32 A;  5GLF A;  2HZY A;  1WLF A;  2WQT A;  3CF2 A;  5D6Y A;  3ZJT A;  5CD1 A;  1CZ4 A;  2GF7 A;  1SV6 A;  5D2H A;  3RR6 A;  4KDL A;  2PJH B;  1NKQ A;  4QKU A;  3HU1 A;  5DYG A;  1QDN A;  2B25 A;  2EB5 A;  3FPT A;  1CZ5 A;  3FPR A;  4AS1 A;  2EB6 A;  1WZO A;  5EQJ B;  2EB4 A;  4ARI A;  2YVL A;  5D6W A;  5FTN A;  1NR9 A;  1SAW A;  3BQB A;  5D2G A;  3V77 A;  4KDI A;  3ZJU A;  2LW6 A;  5D6X A;  4KLN A;  2MM0 A;  5C18 A;  5D2J A;  2DFU A;  5D2I A;  2QQR A;  5CCB A;  4CQN A;  1S3S A;  3QDF A;  2Q1D X;  5FTJ A;  5C1B A;  3QQ8 A;  3S52 A;  3LGA A;  1I7O A;  3ZGZ A;  2PWY A;  4KO8 A;  2JV2 A;  2Q19 X;  3R6O A;  4MAQ A;  1GTT A;  2Q1A X;  5FTK A;  2GFA A;  4DBF A;  5B6C A;  1ZC1 A;  2Q18 X;  4FIB A;  3TIW A;  1R7R A;  1QQJ A;  1HYO A;  3QQ7 A;  5D2F A;  5ERG B;  4UC4 A;  3LHD A;  5DYI A;  3LZK A;  4KOD A;  3HU3 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2Q1AX

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations